Opened 5 years ago
Closed 5 years ago
#3462 closed defect (fixed)
clashes: 'dict_values' object has no attribute 'sort'
Reported by: | Owned by: | pett | |
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Priority: | normal | Milestone: | |
Component: | Structure Analysis | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0rc202005222358 (2020-05-22 23:58:21 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0rc202005222358 (2020-05-22) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:/Users/q594r579/Documents/NatureComm2020/3j9cpore.pdb Summary of feedback from opening C:/Users/q594r579/Documents/NatureComm2020/3j9cpore.pdb --- warning | Ignored bad PDB record found on line 23858 END Chain information for 3j9cpore.pdb #1 --- Chain | Description A B C D E F G | No description available > open C:/Users/q594r579/Documents/NatureComm2020/Cola2_1.pdb Summary of feedback from opening C:/Users/q594r579/Documents/NatureComm2020/Cola2_1.pdb --- warning | Ignored bad PDB record found on line 424 END Chain information for Cola2_1.pdb #2 --- Chain | Description B | No description available > ui tool show Clashes > clashes 1625 clashes > select #3 1625 pseudobonds, 1 model selected > open https://www.rbvi.ucsf.edu/chimerax/tutorials.html Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html > help help:user > select #2/B:1-35 423 atoms, 439 bonds, 1 model selected > show sel atoms > select #2/B:1-35 423 atoms, 439 bonds, 1 model selected > toolshed show > hide sel atoms > hide #2 models > show #2 models > ~select #2 Nothing selected > select #2 423 atoms, 439 bonds, 1 model selected > show sel atoms > ~select #2 Nothing selected > select #3 1625 pseudobonds, 1 model selected > style sphere Changed 24273 atom styles > style sphere Changed 24273 atom styles > style ball Changed 24273 atom styles > show cartoons > style stick Changed 24273 atom styles > hide #1 models > show #1 models > select #1 23850 atoms, 23967 bonds, 1570 pseudobonds, 2 models selected > select #3 1625 pseudobonds, 1 model selected > ~select #3 Nothing selected > select #3 1625 pseudobonds, 1 model selected > ~select #3 Nothing selected > undo > undo > undo > style sphere Changed 24273 atom styles > show surfaces > toolshed show > ui tool show Clashes > clashes setAttrs true select true reveal true 1625 clashes Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.0rc202005222358\bin\lib\site- packages\chimerax\atomic\clashes\tool.py", line 55, in run_command run(self.session, " ".join(self.gui.get_command())) File "C:\Program Files\ChimeraX 1.0rc202005222358\bin\lib\site- packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "C:\Program Files\ChimeraX 1.0rc202005222358\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2802, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX 1.0rc202005222358\bin\lib\site- packages\chimerax\atomic\clashes\cmd.py", line 22, in cmd_clashes return _cmd(session, test_atoms, name, hbond_allowance, overlap_cutoff, "clashes", color, radius, **kw) File "C:\Program Files\ChimeraX 1.0rc202005222358\bin\lib\site- packages\chimerax\atomic\clashes\cmd.py", line 181, in _cmd clash_vals.sort() AttributeError: 'dict_values' object has no attribute 'sort' AttributeError: 'dict_values' object has no attribute 'sort' File "C:\Program Files\ChimeraX 1.0rc202005222358\bin\lib\site- packages\chimerax\atomic\clashes\cmd.py", line 181, in _cmd clash_vals.sort() See log for complete Python traceback. OpenGL version: 3.3.0 - Build 25.20.100.6519 OpenGL renderer: Intel(R) UHD Graphics 620 OpenGL vendor: Intel Manufacturer: HP Model: HP ProBook 450 G6 OS: Microsoft Windows 10 Enterprise (Build 18363) Memory: 8,454,504,448 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i5-8265U CPU @ 1.60GHz" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 5 years ago
Component: | Unassigned → Structure Analysis |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → clashes: 'dict_values' object has no attribute 'sort' |
comment:2 by , 5 years ago
Resolution: | → fixed |
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Status: | accepted → closed |
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