Opened 5 years ago
Closed 5 years ago
#3455 closed defect (fixed)
Session restore does not show surfaces
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.5.0-x86_64-i386-64bit
ChimeraX Version: 1.1.dev202006250254 (2020-06-25 02:54:05 UTC)
Description
Molecular surfaces on models with nucleotides shown on an undisplayed model saved in a session does not show the surfaces when the session is restore and the model is displayed.
The problem is that cached Drawing._displayed_scene_positions gets set to a length 0 set of places when nucleotides asks for its bounds while the model is undisplayed. When the structure is displayed it does not reset the cached scene positions so the surfaces are not rendered at any positions.
Log:
UCSF ChimeraX version: 1.1.dev202006250254 (2020-06-25)
© 2016-2020 Regents of the University of California. All rights reserved.
> open /Users/goddard/ucsf/chimerax/src/bundles/graphics/test.cxs format
> session
Log from Mon Jun 29 20:38:33 2020UCSF ChimeraX version: 1.1.dev202006250254
(2020-06-25)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 6bna
6bna title:
Binding of an antitumor drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BRC-G-C-G
[more info...]
Chain information for 6bna #1
---
Chain | Description
A B | DNA (5'-D(*CP*GP*CP*GP*ap*ap*TP*TP*(CBR)P*GP*CP*G)-3')
Non-standard residues in 6bna #1
---
NT — netropsin
> surface
> hide #!1 models
> save test.cxs
opened ChimeraX session
> show #!1 models
> hide #1.2 models
> show #1.2 models
OpenGL version: 4.1 ATI-3.9.15
OpenGL renderer: AMD Radeon Pro Vega 20 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,3
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1037.120.87.0.0 (iBridge: 17.16.15300.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.5 (19F101)
Kernel Version: Darwin 19.5.0
Time since boot: 1 day 3:41
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Radeon Pro Vega 20:
Chipset Model: Radeon Pro Vega 20
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x69af
Revision ID: 0x00c0
ROM Revision: 113-D2060I-087
VBIOS Version: 113-D20601MA0T-016
Option ROM Version: 113-D20601MA0T-016
EFI Driver Version: 01.01.087
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Session restore does not show surfaces |
comment:2 by , 5 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed.
Made Drawing reset cached _displayed_scene_positions when any parent changes display state.