Opened 5 years ago

Closed 5 years ago

#3449 closed defect (duplicate)

Tried creating the same named 2dlabel twice

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Depiction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.93 (2020-04-03)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | 'clip' is a prefix of an existing command 'clipper'  
  
UCSF ChimeraX version: 0.93 (2020-04-03)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/EcmrR_far_UpDNA.pdb

Chain information for EcmrR_far_UpDNA.pdb #1  
---  
Chain | Description  
G H | No description available  
N | No description available  
T | No description available  
  

> lighting soft

> graphics silhouettes true

> set silhouetteWidth 1

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/EcmrR_near_UpDNA.pdb

Chain information for EcmrR_near_UpDNA.pdb #2  
---  
Chain | Description  
G H | No description available  
N | No description available  
T | No description available  
  

> select #2

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> ~select #2

Nothing selected  

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/EcmrR_from_RPo.pdb

Chain information for EcmrR_from_RPo.pdb #3  
---  
Chain | Description  
G H | No description available  
  

> select #3

4519 atoms, 4627 bonds, 8 pseudobonds, 2 models selected  

> view sel

> hide #!1 models

> hide #!2 models

> close #3

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/EcmrR_UpDNA_RPo.pdb

Chain information for EcmrR_UpDNA_RPo.pdb #3  
---  
Chain | Description  
G H | No description available  
N | No description available  
T | No description available  
  

> select #3

5705 atoms, 5956 bonds, 8 pseudobonds, 2 models selected  

> view sel

> show #!2 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!2 models

> show #!2 models

> hide #!3 models

> view name BDNA

> morph #1,2,3 frames 90

Computed 181 frame morph #4  

> coordset #4 1,181

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RPo_aligned_2RP4nt.pdb

Chain information for RPo_aligned_2RP4nt.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G H | No description available  
N | No description available  
T | No description available  
  

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> ~select #5

Nothing selected  

> hide #!4 models

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> view sel

> ~select #5

Nothing selected  

> view name RPo

> hide #5.2 models

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RP4nt_4morph.pdb

Chain information for RP4nt_4morph.pdb #6  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G H | No description available  
N | No description available  
T | No description available  
  

> hide #6.2 models

> select #6

35806 atoms, 36609 bonds, 33 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> ~select #6

Nothing selected  

Expected a keyword  

> morph #5,6 frames 30

Computed 31 frame morph #7  

> coordset #7 1,31

> cartoon style nucleic xsection oval width 1.5 thickness 1.5

> hide #7.2 models

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RP4nt_4figures.pdb

Chain information for RP4nt_4figures.pdb #8  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G H | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> select #8

35904 atoms, 36716 bonds, 26 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> hide #8.2 models

> ~select #8

Nothing selected  

> hide #!7 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RP5nt_EcmrR_near.pdb

Chain information for RP5nt_EcmrR_near.pdb #9  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G H | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> select #9

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> ~select #9

Nothing selected  

> view RPo

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RP5nt_EcmrR_far.pdb

Chain information for RP5nt_EcmrR_far.pdb #10  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G H | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> select #10

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> ~select #10

Nothing selected  

> hide #10.2 models

> hide #9.2 models

> morph #8,9,10 frames 90

Computed 181 frame morph #11  

> coordset #11 1,181

> hide #!7 models

> hide #11.2 models

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RP5nt_aligned_2RP4nt.pdb

Chain information for RP5nt_aligned_2RP4nt.pdb #12  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> hide #12.2 models

> select #12

31136 atoms, 31814 bonds, 19 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> ~select #12

Nothing selected  

> select #12

31136 atoms, 31814 bonds, 19 pseudobonds, 3 models selected  

> ~select #12

Nothing selected  

> hide #!12 models

> show #!12 models

> hide #!12 models

> show #!12 models

> hide #!12 models

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RPe1_4movie.pdb

Chain information for RPe1_4movie.pdb #13  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> select #13

28297 atoms, 28800 bonds, 10 pseudobonds, 2 models selected  

> hide sel atoms

> show sel cartoons

> hide #13.1 models

> ~select #13.1

28297 atoms, 28800 bonds, 1 model selected  

> select #13

28297 atoms, 28800 bonds, 10 pseudobonds, 2 models selected  

> ~select #13

Nothing selected  

> show #!1 models

> select #1

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> show sel cartoons

> ~select #1

Nothing selected  

> hide #!11 models

> turn y -60

> show #!12 models

> view name RDe1

> view RPo 30

> view RDe1 30

> hide #!12 models

> hide #!1 models

> hide #13/A-F cartoons

> hide #13/N cartoons

> hide #13/R atoms

> show #13/R atoms

> show #13/T atoms

> turn y -30

> hide #13/T:1-6 cartoons,atoms

> select #13/T:17@C4'

1 atom, 1 model selected  

> select up

21 atoms, 23 bonds, 1 model selected  

> select up

346 atoms, 387 bonds, 1 model selected  

> style sel stick

Changed 346 atom styles  

> color sel byhetero

> select clear

> select #13/D:460:462:464

24 atoms, 21 bonds, 1 model selected  

> show (sel-residues & sidechain) target ab

> style sel stick

Changed 24 atom styles  

> color sel byhetero

> select clear

> select #13/D:1501

1 atom, 1 model selected  

> show sel atoms

> style sel sphere

Changed 1 atom style  

> color sel byhetero

> select clear

> turn y 30

> turn y 60

> turn y -60

> turn y -30

> hide #13/D:460:462:464

> show #!1 models

> show #!2 models

> show #!3 models

> show #!4 models

> show #!5 models

> show #!6 models

> show #!7 models

> show #!8 models

> show #!9 models

> show #!10 models

> show #!11 models

> show #!12 models

> cartoon style nucleic xsection oval width 1.5 thickness 1.5

> hide #!12 models

> hide #!11 models

> hide #!10 models

> hide #!9 models

> hide #!8 models

> hide #!7 models

> hide #!6 models

> hide #!5 models

> hide #!4 models

> hide #!3 models

> hide #!2 models

> select #13/R:1

23 atoms, 25 bonds, 1 model selected  

> select up

193 atoms, 215 bonds, 1 model selected  

> select up

28297 atoms, 28800 bonds, 1 model selected  

> select down

193 atoms, 215 bonds, 1 model selected  

> select up

28297 atoms, 28800 bonds, 1 model selected  

> nucleotides sel tube/slab shape box

> select clear

> hide #!1 models

> show #!1 models

> hide #!1 models

> select #13/R:1-9#13/T:7-17

419 atoms, 468 bonds, 1 model selected  

> view sel

> turn y -10

> show #!9 models

> hide #!13 models

> select #9/R:5

20 atoms, 21 bonds, 1 model selected  

> select up

117 atoms, 129 bonds, 1 model selected  

> show sel atoms

> turn y 10

> select #9/N:81

21 atoms, 23 bonds, 1 model selected  

> select up

1027 atoms, 1150 bonds, 1 model selected  

> hide #!9 models

> show #!9 models

> select #9

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> hide #!9 models

> ~select #9

Nothing selected  

> show #!12 models

> select #12/N:80

22 atoms, 24 bonds, 1 model selected  

> select up

1027 atoms, 1150 bonds, 1 model selected  

> select up

31136 atoms, 31814 bonds, 1 model selected  

> select down

1027 atoms, 1150 bonds, 1 model selected  

> hide sel cartoons

> select #12/R:1

32 atoms, 34 bonds, 1 model selected  

> select up

117 atoms, 129 bonds, 1 model selected  

> show sel atoms

> view name RNA

> view list

Named views: BDNA, RDe1, RNA, RPo  

> view RDe1 30

> turn y -30

> view RNA 30

> view RDe1

> view RPo

> select #12

31136 atoms, 31814 bonds, 19 pseudobonds, 3 models selected  

> show sel cartoons

> show #!13 models

Expected a keyword  

> morph #12,13 frames 90

Computed 91 frame morph #14  

> coordset #14 1,91

> view RDe1

> turn y -30

Expected an objects specifier or a view name or a keyword  

> view RNA

> hide #14.2 models

> view RDe1

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RPe2_sigma_far.pdb

Chain information for RPe2_sigma_far.pdb #15  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> ~select #12

Nothing selected  

> select #15

28291 atoms, 28794 bonds, 10 pseudobonds, 2 models selected  

> hide sel atoms

> show sel cartoons

> hide #15.1 models

> ~select #15

Nothing selected  

> morph #14,15 frames 90

Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 258, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2848, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/morph.py", line 76, in morph  
color_segments = color_segments, color_core = color_core)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 25, in compute_morph  
res_groups = motion.interpolate(mol, res_interp)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 144, in interpolate  
coords0[maindices] = matoms.coords  
IndexError: index 29749 is out of bounds for axis 0 with size 28150  
  
IndexError: index 29749 is out of bounds for axis 0 with size 28150  
  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 144, in interpolate  
coords0[maindices] = matoms.coords  
  
See log for complete Python traceback.  
  

> morph #13,15 frames 90

Computed 91 frame morph #16  

> coordset #16 1,91

> hide #!14 models

> select #16

28291 atoms, 28794 bonds, 10 pseudobonds, 2 models selected  

> show sel cartoons

> ~select #16

Nothing selected  

> hide #16.1 models

> open2
> /Users/yangyang/Structure/RNAP_EcmrR/Figures/Aligned_models/RPe2_aligned_2RP4nt.pdb

Chain information for RPe2_aligned_2RP4nt.pdb #17  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
N | No description available  
R | No description available  
T | No description available  
  

> select #17

25958 atoms, 26428 bonds, 11 pseudobonds, 3 models selected  

> hide sel atoms

> show sel cartoons

> hide #17.2 models

> ~select #17

Nothing selected  

> view RPo 30

> show #!1 models

> view name RDe2

> view list

Named views: BDNA, RDe1, RDe2, RNA, RPo  

> view RDe1 30

> view RDe2 30

> hide #!1 models

> hide #!16 models

> show #!16 models

> hide #!17 models

> transparency #16/A-E 70 cartoons

> show #!1 models

> select #1

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> show sel cartoons

> show #!2 models

> select #2

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> show sel cartoons

> show #!3 models

> select #3

5705 atoms, 5956 bonds, 8 pseudobonds, 2 models selected  

> show sel cartoons

> show #!4 models

> select #4

5705 atoms, 5956 bonds, 1 model selected  

> show sel cartoons

> show #!5 models

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> show sel cartoons

> show sel cartoons

> ~select #5

Nothing selected  

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> show sel atoms

> hide sel atoms

> show sel cartoons

> show #5 cartoons

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> select #6

35806 atoms, 36609 bonds, 33 pseudobonds, 3 models selected  

> ~select #6

Nothing selected  

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> ~select #5

Nothing selected  

> hide #!5 models

> show #!5 models

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> show sel atoms

> show sel cartoons

> hide sel atoms

> show #5/A-F cartoons

> show #!7 models

> select #7

35562 atoms, 36350 bonds, 9 pseudobonds, 2 models selected  

> ~select #7

Nothing selected  

> hide #!6 models

> show #!6 models

> select #7

35562 atoms, 36350 bonds, 9 pseudobonds, 2 models selected  

> show sel cartoons

> ~select #7

Nothing selected  

> show #!8 models

> select #8

35904 atoms, 36716 bonds, 26 pseudobonds, 3 models selected  

> show sel cartoons

> show #!9 models

> select #9

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> show sel cartoons

> show #!10 models

> select #10

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> show sel cartoons

> show #!11 models

> select #11

35477 atoms, 36254 bonds, 11 pseudobonds, 2 models selected  

> show sel cartoons

> show #!12 models

> select #12

31136 atoms, 31814 bonds, 19 pseudobonds, 3 models selected  

> show sel cartoons

> show #!13 models

> select #13

28297 atoms, 28800 bonds, 10 pseudobonds, 2 models selected  

> show sel cartoons

> show #!14 models

> select #14

28150 atoms, 28639 bonds, 11 pseudobonds, 2 models selected  

> show sel cartoons

> show #!15 models

> select #15

28291 atoms, 28794 bonds, 10 pseudobonds, 2 models selected  

> show sel cartoons

> select #16

28291 atoms, 28794 bonds, 10 pseudobonds, 2 models selected  

> show sel cartoons

> show #!17 models

> show sel cartoons

> select #17

25958 atoms, 26428 bonds, 11 pseudobonds, 3 models selected  

> show sel cartoons

> ~select #17

Nothing selected  

> view RPo 30

> select #1

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> hide sel atoms

> select #2

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> hide sel atoms

> select #3

5705 atoms, 5956 bonds, 8 pseudobonds, 2 models selected  

> hide sel atoms

> select #4

5705 atoms, 5956 bonds, 1 model selected  

> hide sel atoms

> select #5

35830 atoms, 36592 bonds, 19 pseudobonds, 3 models selected  

> hide sel atoms

> select #6

35806 atoms, 36609 bonds, 33 pseudobonds, 3 models selected  

> hide sel atoms

> select #7

35562 atoms, 36350 bonds, 9 pseudobonds, 2 models selected  

> hide sel atoms

> select #8

35904 atoms, 36716 bonds, 26 pseudobonds, 3 models selected  

> hide sel atoms

> select #9

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> hide sel atoms

> select #10

35655 atoms, 36441 bonds, 22 pseudobonds, 3 models selected  

> hide sel atoms

> select #11

35477 atoms, 36254 bonds, 11 pseudobonds, 2 models selected  

> hide sel atoms

> select #12

31136 atoms, 31814 bonds, 19 pseudobonds, 3 models selected  

> hide sel atoms

> select #13

28297 atoms, 28800 bonds, 10 pseudobonds, 2 models selected  

> hide sel atoms

> select #14

28150 atoms, 28639 bonds, 11 pseudobonds, 2 models selected  

> hide sel atoms

> select #15

28291 atoms, 28794 bonds, 10 pseudobonds, 2 models selected  

> hide sel atoms

> select #16

28291 atoms, 28794 bonds, 10 pseudobonds, 2 models selected  

> hide sel atoms

> select #17

25958 atoms, 26428 bonds, 11 pseudobonds, 3 models selected  

> hide sel atoms

> ~select #17

Nothing selected  

> color /A coral

> color /B forestgreen

> color /C cornflower blue

> color /D violet

> color /E firebrick

> color /F gray

> color /G medium slate blue

> color /H orange

> color /T salmon

> color /N lime green

> color /R yellow

> cartoon style nucleic xsection oval width 1.5 thickness 1.5

Expected a keyword  

> 2dlabels create EcmrR text "EcmrR dimer" color black size 56 xpos .70 ypos
> .50

> view BDNA

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!5 models

> show #!5 models

> hide #!4 models

> show #!4 models

> 2dlabels create RPo text EcmrR-RPo color black size 56 xpos .43 ypos .07

> view BDNA

> view BDNA

> hide #!2 models

> show #!2 models

> hide #!4 models

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> select #2

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> ~select #2

Nothing selected  

> select #2

5708 atoms, 5959 bonds, 8 pseudobonds, 2 models selected  

> ui mousemode rightMode "move label"

> 2dlabels #18.1 xpos 0.421 ypos 0.759

> show #!4 models

> hide #!1 models

> show #!1 models

> show #!3 models

> view RPo

> 2dlabels #18.2 xpos 0.423 ypos 0.098

> 2dlabels #18.2 xpos 0.412 ypos 0.093

> 2dlabels create RP4nt text EcmrR-RP color black size 56 xpos .43 ypos .07

> 2dlabels #18.3 xpos 0.411 ypos 0.093

> 2dlabels create 4nt text itc-4nt color black size 32 xpos .563 ypos .066

> 2dlabels #18.4 xpos 0.571 ypos 0.089

> hide #18.2 models

> show #18.2 models

> 2dlabels #18.4 xpos 0.569 ypos 0.089

> hide #18.2 models

> show #18.2 models

> 2dlabels create RP5nt text RP color black size 56 xpos .49 ypos .07

Invalid "ypos" argument: Expected a number  

> 2dlabels create RP5nt text RP color black size 56 xpos .49 ypos .07

Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 258, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2848, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 88, in label_create  
return Label(session, name, **kw)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 512, in __init__  
lb.add_label(self)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 400, in add_label  
nl.delete()  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 530, in delete  
lm.delete_label(self)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 417, in delete_label  
self._labels.remove(label)  
ValueError: list.remove(x): x not in list  
  
ValueError: list.remove(x): x not in list  
  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 417, in delete_label  
self._labels.remove(label)  
  
See log for complete Python traceback.  
  

> 2dlabels create RP5nt text RP color black size 56 xpos .49 ypos .07

Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 475, in <lambda>  
gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e,
"mouse_down")  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/movelabel.py", line 28, in mouse_down  
self._label = label = label_under_window_position(self.session, x, y)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 252, in label_under_window_position  
lw,lh = lbl.drawing.size  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 611, in size  
w,h = self.window_size  
TypeError: cannot unpack non-iterable NoneType object  
  
TypeError: cannot unpack non-iterable NoneType object  
  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 611, in size  
w,h = self.window_size  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 475, in <lambda>  
gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e,
"mouse_down")  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/movelabel.py", line 28, in mouse_down  
self._label = label = label_under_window_position(self.session, x, y)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 252, in label_under_window_position  
lw,lh = lbl.drawing.size  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 611, in size  
w,h = self.window_size  
TypeError: cannot unpack non-iterable NoneType object  
  
TypeError: cannot unpack non-iterable NoneType object  
  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 611, in size  
w,h = self.window_size  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-2.11.20
OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Change History (2)

comment:1 by Tom Goddard, 5 years ago

Component: UnassignedDepiction
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionTried creating the same named 2dlabel twice

comment:2 by Tom Goddard, 5 years ago

Resolution: duplicate
Status: assignedclosed

Duplicate of #3447. Fixed.

Note: See TracTickets for help on using tickets.