Opened 5 years ago

Closed 5 years ago

#3412 closed defect (duplicate)

Volume viewer: unexpected indentation

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.0rc202005150054 (2020-05-15 00:54:28 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.0rc202005150054 (2020-05-15)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> help help:index.html

> open emdb:3364

Summary of feedback from opening 3364 fetched from emdb  
---  
note | Fetching compressed map 3364 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-3364/map/emd_3364.map.gz  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 258, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 101, in cmd_open  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 128, in provider_open  
(session, ident, format_name, ignore_cache), provider_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 380, in collated_open  
return func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 140, in fetch  
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\emdb_fetch.py", line 49, in fetch_emdb  
name = model_name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\manager.py", line 164, in open_data  
_add_models=False, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 152, in provider_open  
name or model_name_from_path(fi.file_name)), provider_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 381, in collated_open  
return func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 147, in open  
return open_map(session, path, format=_name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3307, in open_map  
smodels, smsg = open_grids(session, sgrids, name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3367, in open_grids  
show_volume_dialog(session)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 445.87
OpenGL renderer: GeForce 940MX/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Inspiron 17-7778
OS: Microsoft Windows 10 Pro (Build 18362)
Memory: 17,032,499,200
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-6500U CPU @ 2.50GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

Change History (2)

comment:1 by Eric Pettersen, 5 years ago

Component: UnassignedVolume Data
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionVolume viewer: unexpected indentation

comment:2 by Eric Pettersen, 5 years ago

Resolution: duplicate
Status: assignedclosed
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