Move picked models VR mode broken

[goddard@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.1.dev202006272253 (2020-06-27 22:53:50 UTC)
Description
Tried using "moved picked models" mouse mode in VR.

Log:
UCSF ChimeraX version: 1.1.dev202006272253 (2020-06-27)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open C:\cygwin64\home\goddard\ucsf\presentations\remdesivir-ar-
> may2020\data\remdesivir6.cxs format session

Log from Tue Jun 30 11:14:43 2020UCSF ChimeraX version: 1.1.dev202006300344
(2020-06-30)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir5.cxs format session

Log from Mon Jun 29 17:54:58 2020UCSF ChimeraX version: 1.1.dev202006250254
(2020-06-25)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir4.cxs format session

Log from Mon Jun 29 17:08:38 2020UCSF ChimeraX version: 1.1.dev202006250254
(2020-06-25)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir3.cxs format session

Log from Mon Jun 29 15:43:02 2020UCSF ChimeraX version: 1.1.dev202006250254
(2020-06-25)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir2.cxs format session

Log from Mon Jun 29 14:05:28 2020UCSF ChimeraX version: 1.1.dev202006250254
(2020-06-25)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/cov2_rna_twist.cxs format session

Log from Sat Jun 6 17:27:41 2020UCSF ChimeraX version: 1.1.dev202006052335
(2020-06-05)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/goddard/Desktop/cov2_rna_twist.cxs format session

Log from Sat Jun 6 17:17:30 2020UCSF ChimeraX version: 1.1.dev202006052335
(2020-06-05)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> rna path ~/ucsf/presentations/sars-rna-may2020/stems pattern sphere length
> 500 randomLoopTwist 180

RNA sphere radius 47.8  

> rna model ~/ucsf/presentations/sars-rna-may2020/sequence.fasta #1

Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  

Chain information for RNA #2  
---  
Chain | Description  
I | No description available  
  

> style stick

Changed 11096 atom styles  

> hide #1 models

> close

> rna path ~/ucsf/presentations/sars-rna-may2020/stems pattern sphere
> randomLoopTwist 180

RNA sphere radius 340.4  

> rna model ~/ucsf/presentations/sars-rna-may2020/sequence.fasta #1

Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  

Chain information for RNA #2  
---  
Chain | Description  
I | No description available  
  

> hide #1 models

> lighting soft

> lighting simple

> lighting soft

> set bgColor white

> set bgColor black

> save /Users/goddard/Desktop/image1.png supersample 3

> save /Users/goddard/Desktop/cov2_rna_twist.cxs

opened ChimeraX session  

> shape sphere color black

> hide #2 models

> set bgColor white

> close #3

> show #2 models

> shape sphere color black radius 400

> close #3

> shape sphere color black radius 350

> close #3

> shape sphere color black radius 300

> close #3

> shape sphere color black radius 340

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> lighting simple

> lighting full

> lighting soft

> save /Users/goddard/Desktop/cov2_rna_twist.cxs

opened ChimeraX session  

> close #1

> rename #2 id #4

> rename #3 id #4.1

> open /Users/goddard/ucsf/presentations/remdesivir-ar-may2020/data/rdv.pdb

> hide #4 models

> rename #2 id #1

> set bgColor black

> show #4 models

> hide #4 models

> lighting simple

> show #4 models

> hide #4 models

> view

> open /Users/goddard/ucsf/presentations/remdesivir-ar-may2020/data/atp.pdb

> ui mousemode right "translate selected models"

> select #2:1@O6

1 atom, 1 model selected  

> select clear

> color #1 & C tan

> open /Users/goddard/ucsf/presentations/remdesivir-ar-may2020/data/rtp.pdb

> select #3:1@O12

1 atom, 1 model selected  

> select clear

> rename #1 Remdesivir

> rename #2 ATP

> rename #3 RTP

> rename #4 "SARS-CoV-2 RNA"

> rename #4.1 sphere

> show #4 models

> select #1-3

165 atoms, 172 bonds, 3 models selected  

> hide #4 models

> show #4 models

> select clear

> save data/remdesivir1.cxs

> select #1-3

165 atoms, 172 bonds, 3 models selected  

> select clear

> open 7bv2

7bv2 title:  
The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate
form of Remdesivir(RTP) [more info...]  
  
Chain information for 7bv2 #5  
---  
Chain | Description  
A | SARS-CoV-2 Nsp12  
B | SARS-CoV-2 nsp8  
C | SARS-CoV-2 nsp7  
P | Primer  
T | Templete  
  
Non-standard residues in 7bv2 #5  
---  
F86 —
[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl
dihydrogen phosphate  
MG — magnesium ion  
POP — pyrophosphate 2-  
ZN — zinc ion  
  

> hide #4 models

> select #5/A:133@ND1

1 atom, 1 model selected  

> show #4 models

> lighting simple

> set bgColor white

> select clear

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir1.cxs

> hide #2 models

> hide #3 models

> set bgColor black

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/7bv2_particles.tif

Opened 7bv2_particles.tif, grid size 1600,1654,1, pixel 1, shown at step 1,
values uint8  

> hide #1 models

> hide #4 models

> hide #!5 models

> volume #6 level 105,0 level 223,0.8 level 255,1

> volume #6 level 105,0 level 179.6,0.9853 level 255,1

> volume #6 level 18.43,0.9853 level 179.6,0.9853 level 255,1

> volume #6 level 18.43,0.9853 level 179.6,0.9853 level 249.5,0

> volume #6 level 18.43,0.9853 level 144.7,0.4118 level 249.5,0

> volume #6 level 18.43,0.9853 level 144.7,0.4118 level 255,1

> volume #6 level 18,0.02941 level 144.7,0.4118 level 255,1

> volume #6 level 18,0.02941 level 255,1 color white color white

> volume #6 level 18,0 level 255,1

> show #!5 models

> ui mousemode right "tape measure"

> marker segment #7 position 1438,1513,0 toPosition 1560,1524,1.137e-13 color
> yellow radius 0.25 label 122.7 labelHeight 12.27 labelColor yellow

> marker delete #7

> marker segment #7 position 1434,1615,0 toPosition 1562,1612,-1.137e-13 color
> yellow radius 0.25 label 128.2 labelHeight 12.82 labelColor yellow

> volume #6 voxelSize 2.34

> select clear

> marker segment #7 position 3357,3776,0 toPosition 3654,3774,0 color yellow
> radius 0.585 label 296.7 labelHeight 29.67 labelColor yellow

> select clear

> marker delete #7

> ui mousemode right "translate selected models"

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir1.cxs

> select #6

2 models selected  

> show #4 models

> hide #4 models

> set bgColor white

> set bgColor black

> volume #6 level 18,0 level 255,1 level 135.9,0.6471 color white color white
> color white

> volume #6 level 18,0 level 255,1 level 137.6,0.6912

> volume #6 level 101.8,0 level 255,1 level 137.6,0.6912

> volume #6 level 101.8,0 level 255,1 level 137.1,0.6324

> volume #6 level 19.28,0 level 255,1 level 137.1,0.6324

> volume #6 level 19.28,0 level 255,1 level 201,1

> volume #6 level 18,1 level 255,1 level 201,1

> volume #6 level 18,1 level 255,0 level 201,1

> volume #6 level 18,1 level 255,0 level 117.1,0.7059

> volume #6 level 18,0 level 255,0 level 117.1,0.7059

> volume #6 level 18,0 level 255,1 level 117.1,0.7059

> volume #6 level 18,0 level 255,1 level 183.9,0.6618

> volume #6 level 18,0 level 255,1 level 179.3,0.6912

> volume #6 level 18,0 level 255,1 color white color white

> set bgColor white

> volume #6 backingColor black

> ui tool show Shell

> save data/remdesivir2.cxs

opened ChimeraX session  

> show #!4 models

> show #4.1 models

> hide #!4 models

> hide #!5 models

> show #!5 models

> open 30210 fromDatabase emdb

Opened emd_30210.map, grid size 192,192,192, pixel 1.01, shown at level
0.0278, step 1, values float32  

> hide #!6 models

> usage view pos

view position models sameAsModels a models specifier  
— move models to have same scene position as another model  

> view position #7 sameAsModels #5

> hide #!5 models

> volume #7 level 0.07363

> lighting soft

> show #!5 models

> style #!5 ball

Changed 8555 atom styles  

> volume #7 level 0.05142

> hide #!7 models

> color #5/A gold

> show #!6 models

> color #5/A byelement

> color #5/A gold

> color #5/A byhetero

> hide #!6 models

> show #!7 models

> hide #!7 models

> lighting simple

> color #5/P orange

> rename #!5 Polymerase

> rename #!6 "EM micrograph"

> rename #!7 "EM map polymerase"

> show #!6 models

> hide #!6 models

> open 7bv2

7bv2 title:  
The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate
form of Remdesivir(RTP) [more info...]  
  
Chain information for 7bv2 #8  
---  
Chain | Description  
A | SARS-CoV-2 Nsp12  
B | SARS-CoV-2 nsp8  
C | SARS-CoV-2 nsp7  
P | Primer  
T | Templete  
  
Non-standard residues in 7bv2 #8  
---  
F86 —
[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl
dihydrogen phosphate  
MG — magnesium ion  
POP — pyrophosphate 2-  
ZN — zinc ion  
  

> hide #!5 models

> view position #8 sameAsModels #5

> surface #8/A-C

> hide #8/A-C

> style #8/P,T stick

Changed 548 atom styles  

> nucleotides #!8 tube/slab shape box

> color #8/P orange

> rename #!8 "Polymerase surfaces"

> save data/remdesivir3.cxs

[Errno 20] Not a directory: 'data'  

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir3.cxs

> rename #!8 "Protein surfaces"

incomplete quoted text  

> rename #!5 "RNA polymerase"

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir3.cxs

opened ChimeraX session  

> open /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly0.pdb
> /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly1.pdb
> /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly2.pdb
> /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly3.pdb
> /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly4.pdb
> /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly5.pdb
> /Users/goddard/ucsf/presentations/remdesivir-may2020/data/poly6.pdb

Chain information for poly0.pdb #9  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  
Chain information for poly1.pdb #10  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  
Chain information for poly2.pdb #11  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  
Chain information for poly3.pdb #12  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  
Chain information for poly4.pdb #13  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  
Chain information for poly5.pdb #14  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  
Chain information for poly6.pdb #15  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
P | No description available  
T | No description available  
  

> morph #9-15 same true

Computed 121 frame morph #16  

> coordset #16 1,121

> view position #16 sameAsModels #8

> hide #!8 models

> close #9-15

> rename #!16 id #9

> rename #9 "RNA elongate"

> nucleotides #!9 slab

> style nucleic & #!9 stick

Changed 803 atom styles  

> hide #9/A-C

> show #!8 models

> hide #!8 models

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir4.cxs

opened ChimeraX session  

> delete #9/A-C

> ui mousemode right "play coordinates"

> show #!8 models

> view

> hide #!9 models

> view

> hide #!8 models

> show #!8 models

> surface #8/A-C

> hide #8.4 models

> show #8.4 models

> hide #8.5 models

> show #8.5 models

> hide #8.6 models

> show #8.6 models

> close #8.4-6

> surface #8/A-C

> hide #8/P,T

> show #!9 models

> hide #!8 models

> select #9:RTP

Nothing selected  

> select #9:RDV

Nothing selected  

> select #9:F86

24 atoms, 26 bonds, 1 model selected  

> ~nucleotides #9:F86

> color #9:F86 majenta

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color #9:F86 magenta

> color #9:F86 byhetero

> style #9:F86 ball

Changed 24 atom styles  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/scripts/elongate.py

Traceback (most recent call last):  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/open_command/dialog.py", line 150, in _qt_safe  
if data_format is None else " format " +
StringArg.unparse(data_format.nicknames[0])))  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/run.py", line 31, in run  
results = command.run(text, log=log)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/open_command/cmd.py", line 95, in cmd_open  
return Command(session, registry=registry).run(provider_cmd_text, log=log)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/open_command/cmd.py", line 146, in provider_open  
name or model_name_from_path(fi.file_name)), provider_kw)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/open_command/cmd.py", line 359, in collated_open  
return func(*func_args, **func_kw)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core_formats/__init__.py", line 48, in open  
return open_python_script(session, data, file_name)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/scripting.py", line 82, in open_python_script  
_exec_python(session, code, argv)  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/scripting.py", line 59, in _exec_python  
exec(code, sandbox.__dict__)  
File "elongate.py", line 22, in <module>  
File "elongate.py", line 16, in added_residues  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File "elongate.py", line 16, in added_residues  
  
See log for complete Python traceback.  
  

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/scripts/elongate.py

executed elongate.py  

> select clear

> cartoon #9

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir5.cxs

opened ChimeraX session  

> delete #9:/A-C

Missing or invalid "atoms" argument: only initial part "#9" of atom specifier
valid  

> delete #9/A-C

> show #!8 models

> delete #8/P,T

> ui mousemode right "play coordinates"

> open /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/scripts/elongate.py format python

executed elongate.py  

> select #8/A:861@OG

1 atom, 1 model selected  

> select up

6 atoms, 5 bonds, 2 models selected  

> color sel orange

> select clear

> hide #!8 models

> show #!8 models

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir6.cxs

> show #1 models

> hide #!9 models

> hide #!8 models

> show #2 models

> show #3 models

> hide #1 models

> show #1 models

> style #1-3 ball

Changed 165 atom styles  

> view

> cofr

Center of rotation: -1.8372 25.417 520.1 front center  

> hide #3 models

> hide #2 models

> set bgColor black

> save /Users/goddard/ucsf/presentations/remdesivir-ar-
> may2020/data/remdesivir6.cxs

opened ChimeraX session  

> vr true

started SteamVR rendering  

> realsense true framesPerSecond 15

RealSense camera model #10  

> windowsize 960 540

> vr roomCamera true fieldOfView 69.4 tracker true

color image type uint8 (540, 960, 3)  
depth image type uint16 (540, 960) mean 1220.199670138889 min 0 max 65535  
color intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
color fov [69.52588653564453, 42.64518737792969]  
depth intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
depth fov [69.52588653564453, 42.64518737792969]  
extrinsics color to depth rotation: [1, 0, 0, 0, 1, 0, 0, 0, 1]  
translation: [-0, -0, -0]  

> graphics silhouettes false

> show #2 models

> vr false

> realsense false

> vr true

started SteamVR rendering  

> realsense true framesPerSecond 15

RealSense camera model #10  

> windowsize 960 540

> vr roomCamera true fieldOfView 69.4 tracker true

color image type uint8 (540, 960, 3)  
depth image type uint16 (540, 960) mean 792.6718730709877 min 0 max 65535  
color intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
color fov [69.52588653564453, 42.64518737792969]  
depth intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
depth fov [69.52588653564453, 42.64518737792969]  
extrinsics color to depth rotation: [1, 0, 0, 0, 1, 0, 0, 0, 1]  
translation: [-0, -0, -0]  

> hide #2 models

> show #2 models

> usage mouse

mousemode [leftMode leftMode] [middleMode middleMode] [rightMode rightMode]
[wheelMode wheelMode] [pauseMode pauseMode] [alt] [command] [control] [shift]  
— set mouse mode  
leftMode: one of select, select add, select subtract, select toggle, rotate,
rotate and select, translate, zoom, translate selected models, translate xy
selected models, move picked models, translate selected atoms, rotate selected
models, rotate z selected models, rotate selected atoms, clip, clip rotate,
identify object, pivot, swipe as scroll, none, play coordinates, pick blobs,
bond rotation, zone, swapaa, distance, map eraser, tug, minimize, label, move
label, mark maximum, mark plane, mark surface, mark center, mark point, link
markers, move markers, resize markers, delete markers, contour level, move
planes, crop volume, windowing, rotate slab, tape measure, play map series,
next docked  
middleMode: one of select, select add, select subtract, select toggle, rotate,
rotate and select, translate, zoom, translate selected models, translate xy
selected models, move picked models, translate selected atoms, rotate selected
models, rotate z selected models, rotate selected atoms, clip, clip rotate,
identify object, pivot, swipe as scroll, none, play coordinates, pick blobs,
bond rotation, zone, swapaa, distance, map eraser, tug, minimize, label, move
label, mark maximum, mark plane, mark surface, mark center, mark point, link
markers, move markers, resize markers, delete markers, contour level, move
planes, crop volume, windowing, rotate slab, tape measure, play map series,
next docked  
rightMode: one of select, select add, select subtract, select toggle, rotate,
rotate and select, translate, zoom, translate selected models, translate xy
selected models, move picked models, translate selected atoms, rotate selected
models, rotate z selected models, rotate selected atoms, clip, clip rotate,
identify object, pivot, swipe as scroll, none, play coordinates, pick blobs,
bond rotation, zone, swapaa, distance, map eraser, tug, minimize, label, move
label, mark maximum, mark plane, mark surface, mark center, mark point, link
markers, move markers, resize markers, delete markers, contour level, move
planes, crop volume, windowing, rotate slab, tape measure, play map series,
next docked  
wheelMode: one of select, select add, select subtract, select toggle, rotate,
rotate and select, translate, zoom, translate selected models, translate xy
selected models, move picked models, translate selected atoms, rotate selected
models, rotate z selected models, rotate selected atoms, clip, clip rotate,
identify object, pivot, swipe as scroll, none, play coordinates, pick blobs,
bond rotation, zone, swapaa, distance, map eraser, tug, minimize, label, move
label, mark maximum, mark plane, mark surface, mark center, mark point, link
markers, move markers, resize markers, delete markers, contour level, move
planes, crop volume, windowing, rotate slab, tape measure, play map series,
next docked  
pauseMode: one of select, select add, select subtract, select toggle, rotate,
rotate and select, translate, zoom, translate selected models, translate xy
selected models, move picked models, translate selected atoms, rotate selected
models, rotate z selected models, rotate selected atoms, clip, clip rotate,
identify object, pivot, swipe as scroll, none, play coordinates, pick blobs,
bond rotation, zone, swapaa, distance, map eraser, tug, minimize, label, move
label, mark maximum, mark plane, mark surface, mark center, mark point, link
markers, move markers, resize markers, delete markers, contour level, move
planes, crop volume, windowing, rotate slab, tape measure, play map series,
next docked

mousemode setting [mode] [speed a number]  
— set a mouse mode parameter  
mode: one of select, select add, select subtract, select toggle, rotate,
rotate and select, translate, zoom, translate selected models, translate xy
selected models, move picked models, translate selected atoms, rotate selected
models, rotate z selected models, rotate selected atoms, clip, clip rotate,
identify object, pivot, swipe as scroll, none, play coordinates, pick blobs,
bond rotation, zone, swapaa, distance, map eraser, tug, minimize, label, move
label, mark maximum, mark plane, mark surface, mark center, mark point, link
markers, move markers, resize markers, delete markers, contour level, move
planes, crop volume, windowing, rotate slab, tape measure, play map series,
next docked  

> usage vr button

vr button button [mode] [hand hand] [command a text string]  
— Assign VR hand controller buttons  
button: one of A, B, X, Y, all, grip, menu, thumbstick, touchpad, or trigger  
mode: one of "bond rotation", clip, "clip rotate", "contour level", "crop
volume", default, "delete markers", distance, "identify object", label, "link
markers", "map eraser", "mark center", "mark maximum", "mark plane", "mark
point", "mark surface", minimize, "move label", "move markers", "move picked
models", "move planes", "move scene", "next docked", none, "pick blobs",
pivot, "play coordinates", "play map series", recenter, "resize markers",
rotate, "rotate and select", "rotate selected atoms", "rotate selected
models", "rotate slab", "rotate z selected models", select, "select add",
"select subtract", "select toggle", "show ui", swapaa, "swipe as scroll",
"tape measure", translate, "translate selected atoms", "translate selected
models", "translate xy selected models", tug, windowing, zone, zoom  
hand: one of left or right  

> vr button grip "move picked models"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 769, in next_frame  
self.process_controller_events()  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 797, in process_controller_events  
self.process_controller_buttons()  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 824, in process_controller_buttons  
hc.process_event(e)  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 2635, in process_event  
self._dispatch_event(m, event)  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 2639, in _dispatch_event  
mode.pressed(hand_event)  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 3466, in pressed  
self._click(hand_button_event)  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 3475, in _click  
m.vr_press(e)  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 471, in vr_press  
self._undo_start()  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 441, in _undo_start  
models = self.models()  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 597, in models  
return self._picked_models  
AttributeError: 'MovePickedModelsMouseMode' object has no attribute
'_picked_models'  
  
Error processing trigger "new frame":  
AttributeError: 'MovePickedModelsMouseMode' object has no attribute
'_picked_models'  
  
File "C:\Program Files\ChimeraX-June-30-2020\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 597, in models  
return self._picked_models  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 442.19
OpenGL renderer: GeForce GTX 1080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: Z270X-Gaming K7
OS: Microsoft Windows 10 Home (Build 18362)
Memory: 17,129,693,184
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700K CPU @ 4.20GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

[Tom Goddard]

Fixed.

Move picked models had never been tested in VR. Needed some extra code to choose the model when button pressed.