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Timeline
May 13, 2020:
- 10:19 PM Ticket #3210 (develop stragegy for updating JavaScript toolkits embedded in ui module) created by
- The UI module provides several JavaScript toolkits, namely bootgrid …
- 7:15 PM Ticket #3209 (Graphics hardware error) created by
- […]
- 7:08 PM Ticket #3208 (Cartoon pick: index is out of bounds) created by
- […]
- 3:49 PM Ticket #3207 (Re: [chimerax-users] wrong version in download) closed by
- wontfix
- 3:31 PM Ticket #3207 (Re: [chimerax-users] wrong version in download) created by
- […]
- 2:38 PM Ticket #3204 (Save mmCIF: citation is None) closed by
- fixed: Fixed. Thanks for report this.
- 1:18 PM Ticket #3205 (Can't save settings file (in use by another process)) closed by
- fixed: Hi Stephen, This only happened the very first time you started …
- 1:07 PM Ticket #3206 (wrong version in download) created by
- […]
- 1:07 PM Ticket #3159 (Registration traceback) closed by
- fixed: Fixed in [changset:1a20a02de]. Temporarily set locale to en_us when …
- 10:41 AM Ticket #3205 (Can't save settings file (in use by another process)) created by
- […]
- 9:45 AM Ticket #3204 (Save mmCIF: citation is None) created by
- […]
- 9:24 AM Ticket #3203 (Crash creating OpenGL context) closed by
- can't reproduce: No idea how QOpenGLContext::create() can crash. One Qt bug report …
- 9:10 AM Ticket #3202 (CUDA_ERROR_UNKNOWN starting ISOLDE simulation) closed by
- wontfix: Would require further feedback from the user to debug.
- 9:00 AM Ticket #3203 (Crash creating OpenGL context) created by
- […]
- 8:29 AM Ticket #3202 (CUDA_ERROR_UNKNOWN starting ISOLDE simulation) created by
- […]
- 6:25 AM Ticket #3201 (Out of memory error starting ISOLDE simulation) closed by
- wontfix
- 5:34 AM Ticket #3201 (Out of memory error starting ISOLDE simulation) created by
- […]
May 12, 2020:
- 9:27 PM Ticket #3199 (Map segmentation coloring array size mismatch) closed by
- fixed: Fixed. Image style rendering was sometimes using a region size that …
- 6:29 PM Ticket #3200 (configfile/configparser not handling encoding) created by
- […]
- 6:19 PM Ticket #3199 (Map segmentation coloring array size mismatch) created by
- […]
- 6:16 PM Ticket #3198 (Segmentation map coloring in opaque mode gives error) closed by
- fixed: Fixed. Segment colors array was not correctly converted to opaque colors.
- 5:48 PM Ticket #3198 (Segmentation map coloring in opaque mode gives error) created by
- […]
- 4:53 PM Ticket #3197 (command to change chain IDs) created by
- per summary; can leverage work from #2528
- 1:58 PM Ticket #3195 (Open PDB file in already running ChimeraX) closed by
- fixed: Fixed. ChimeraX was getting the Qt FileOpen event but ignored it …
- 11:49 AM Ticket #3193 ("web fetch" format not recognized) closed by
- fixed: Okay, I have quashed this bug, so that file-history entry should work …
- 11:30 AM Ticket #3196 (Add chimerax --send startup option) created by
- Want to be able to open a file in a currently running ChimeraX from a …
- 11:22 AM Ticket #3195 (Open PDB file in already running ChimeraX) created by
- On Mac double clicking a PDB file starts ChimeraX and shows it, but …
- 11:19 AM Ticket #3153 (Mac ChimeraX not registered to open PDB, mmCIF, MRC, ....) reopened by
- 11:08 AM Ticket #3153 (Mac ChimeraX not registered to open PDB, mmCIF, MRC, ....) closed by
- fixed: Confirmed additional data formats are in the distributed application's …
- 11:00 AM Ticket #3194 (remove bare excepts) created by
- All bare excepts, "except:" should be removed from ChimeraX. Instead, …
- 10:42 AM Ticket #3193 ("web fetch" format not recognized) created by
- […] 2020-05-12_chimerax_1_tutorial_fail.pdf
- 10:42 AM Ticket #3192 (Faster decompression of maps in session files) created by
- Maps saved in session files are compressed with gzip. Compression and …
- 10:36 AM Ticket #3189 (Keyboard interrupt during session restore (hang reading volume data?)) closed by
- not a bug: The full exception is in the bug report. A session file was opened, …
- 10:13 AM Ticket #3191 (remove dead I/O code) created by
- At least remove the dead I/O code from the core. It is very confusing …
- 9:50 AM Ticket #3188 (glDrawBuffer: invalid operation) closed by
- can't reproduce: This is the third report by the same user of this error in 5 months on …
- 9:48 AM Ticket #3187 (Can't save settings file (in use by another process)) closed by
- can't reproduce: Hi Steffen, Thanks for getting back to me. This feels like a problem …
- 9:39 AM Ticket #3190 (Bug reporter test) closed by
- fixed: Works.
- 9:37 AM Ticket #3190 (Bug reporter test) created by
- […]
- 9:31 AM Ticket #3189 (Keyboard interrupt during session restore (hang reading volume data?)) created by
- […]
- 8:35 AM Ticket #3186 (Save options widgets deleted) closed by
- duplicate: Hi Thomas, Very sorry for this problem. It was fixed on Friday and is …
- 8:33 AM Ticket #3185 (Crash getting global interpreter lock) closed by
- can't reproduce
- 5:44 AM Ticket #3188 (glDrawBuffer: invalid operation) created by
- […]
- 4:15 AM Ticket #3187 (Can't save settings file (in use by another process)) created by
- […]
May 11, 2020:
- 4:04 PM Ticket #3186 (Save options widgets deleted) created by
- […]
- 3:34 PM Ticket #3185 (Crash getting global interpreter lock) created by
- […]
- 11:50 AM Ticket #3184 (Save options widgets deleted) closed by
- duplicate: Hi Rebecca, Very sorry for this problem. It was fixed on Friday and …
- 11:45 AM Milestone RC 1 completed
- See Milestone 1.0
- 11:44 AM Ticket #3184 (Save options widgets deleted) created by
- […]
- 11:13 AM Ticket #1166 (Ribbon: operands could not be broadcast together with shapes) closed by
- wontfix: No feedback and ribbon code revamped by Tom Goddard.
- 11:12 AM Ticket #622 (Develop protocol for releasing standard bundles onto toolshed) closed by
- not a bug: The consensus is that we will *not* automatically put standard bundles …
- 11:04 AM Ticket #3183 (pb_scene_coord returning None) closed by
- duplicate: This was fixed a month ago. Use ChimeraX daily build.
- 11:04 AM Ticket #922 (Revise tutorials for new data format and bundle APIs) closed by
- fixed: The new open/save APIs were documented before the RC1 release.
- 10:08 AM Ticket #3182 (Crash restoring Structure) closed by
- duplicate: duplicate of #3181
- 10:07 AM Ticket #3181 (Crash restoring Structure) closed by
- can't reproduce: Corrupted session? Unfortunately, would need the session file to make …
- 10:02 AM Ticket #3180 (Save options widgets deleted) closed by
- duplicate: Hi Ulrich, Very sorry for this problem. It was fixed on Friday and is …
- 10:00 AM Ticket #3179 (Crash syncing threads) closed by
- can't reproduce
- 9:57 AM Ticket #3178 (Error with GaudiViewX opening a .zip file) closed by
- nonchimerax
- 9:55 AM Ticket #3177 (Save options widgets deleted) closed by
- duplicate
- 9:54 AM Ticket #3176 (Save options widgets deleted) closed by
- duplicate: Hi Caillan, Actually the problem is that the save dialog only works …
- 9:52 AM Ticket #3175 (Save options widgets deleted) closed by
- duplicate: Hi Cailian, Very sorry for this problem. It was fixed on Friday and …
- 9:49 AM Ticket #3174 (Save options widgets deleted) closed by
- duplicate: Hi Eva, Very sorry for this problem. It was fixed on Friday and is …
- 9:43 AM Ticket #3171 (Save options widgets deleted) closed by
- duplicate: duplicate of #3166
- 9:30 AM Ticket #3170 (Ubuntu 20.04 (Linux) 64-bit download fails) closed by
- fixed: Try again :-) It now works for me.
- 8:18 AM Ticket #2837 (Crash displaying ISOLDE ramachandran plot) closed by
-
fixed: Fixed. Turns out this was being triggered by calling
MatPlotLib's … - 1:37 AM Ticket #3183 (pb_scene_coord returning None) created by
- […]
May 10, 2020:
- 9:31 PM Ticket #3182 (Crash restoring Structure) created by
- […]
- 9:29 PM Ticket #3181 (Crash restoring Structure) created by
- […]
- 11:48 AM Ticket #3180 (Save options widgets deleted) created by
- […]
- 6:52 AM Ticket #3179 (Crash syncing threads) created by
- […]
May 9, 2020:
- 4:52 PM Ticket #3178 (Error with GaudiViewX opening a .zip file) created by
- […]
- 12:03 PM Ticket #3169 (No Report a Bug option for OpenGL error) closed by
- fixed: Fixed. Code was using logger.error() instead of logger.bug() when …
- 10:20 AM Ticket #3177 (Save options widgets deleted) created by
- […]
- 9:55 AM Ticket #3176 (Save options widgets deleted) created by
- […]
- 8:24 AM Ticket #3175 (Save options widgets deleted) created by
- […]
- 5:40 AM Ticket #3174 (Save options widgets deleted) created by
- […]
May 8, 2020:
- 11:25 PM Ticket #2936 (MemoryError saving session) closed by
- fixed: Not sure if this is the same bug, but the msgpack size limits have …
- 11:21 PM Ticket #1918 (Documentation warnings) closed by
- fixed: Changed code to only report "errors" found when building the merged …
- 10:24 PM Ticket #2573 (safe-save permission denied writing temp file) closed by
- can't reproduce
- 10:23 PM Ticket #2700 (Can't open .pyc file) closed by
- fixed: pyc files from different versions of Python are rejected with a …
- 8:54 PM Ticket #2855 (Command to run tests deprecated) closed by
- fixed: Removing testing from bundle builder. Tests are done, separately, …
- 6:37 PM Ticket #3173 (BLAST PDB web services being removed November 2020) created by
- The PDB announced that legacy PDB web services will be discontinued …
- 5:06 PM Ticket #3172 (Space Navigator does not start on Mac) created by
- […]
- 4:47 PM Ticket #2785 (Nucleotides saving deleted Residue) closed by
- duplicate: Duplicate of #2955. And fixed!
- 4:45 PM Ticket #2823 (Nucleotides trying to save dead Residue in session) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 4:39 PM Ticket #3166 (Save options widgets deleted) closed by
- fixed: Can't cache format-specific options because the dialog is destroyed …
- 3:13 PM Ticket #2994 (Nucleotides trying to save closed structure) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 3:12 PM Ticket #2955 (Nucleotides trying to save closed structure) closed by
- fixed: Fixed.
- 3:11 PM Ticket #3123 (self.positions is None) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 3:11 PM Ticket #3164 (Nucleotides trying to save dead structure) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 1:30 PM Ticket #3171 (Save options widgets deleted) created by
- […]
- 12:52 PM Ticket #3170 (Ubuntu 20.04 (Linux) 64-bit download fails) created by
- […]
- 11:57 AM Ticket #3161 (camera 360sbs: Shader does not have uniform variable "model_view_matrix") closed by
- fixed: Fixed
- 11:29 AM Ticket #3169 (No Report a Bug option for OpenGL error) created by
- […]
- 10:21 AM Ticket #3168 (Support CHARMM/X-PLOR format PDB files) created by
- Like it or not, these are still a favourite with many in the molecular …
- 10:21 AM Ticket #3165 (Problem drawing selection outline: Invalid operation: glBlitFramebuffer) closed by
- duplicate: Fixed several days ago. Selection outline broken by default …
- 10:17 AM Ticket #3167 (Add crystalcontacts command) created by
- From: Guillaume Gaullier Subject: [chimerax-users] How to display …
- 9:09 AM Ticket #3163 (Model panel problem) closed by
- duplicate
- 7:09 AM Ticket #3166 (Save options widgets deleted) created by
- […]
- 5:37 AM Ticket #3165 (Problem drawing selection outline: Invalid operation: glBlitFramebuffer) created by
- […]
- 1:16 AM Ticket #3164 (Nucleotides trying to save dead structure) created by
- […]
May 7, 2020:
- 11:23 PM Ticket #3163 (Model panel problem) created by
- […]
- 8:14 PM Ticket #3157 (License string not "Sphinx compliant") closed by
- fixed: Extra digit in enumeration requires nested paragraph to be indented …
- 6:00 PM Ticket #3162 (Incorrect commands easily lost) created by
- […]
- 5:55 PM Ticket #3161 (camera 360sbs: Shader does not have uniform variable "model_view_matrix") created by
- […]
- 3:29 PM Ticket #3160 (Install updated bundle into 1.0) created by
- Sometime prior to the 1.0 release, we need to verify that an updated …
- 3:27 PM Ticket #3159 (Registration traceback) created by
- At the beginning of #3123 is a traceback in the Registration bundle. …
- 3:20 PM Ticket #3158 (Bogus Linux test failures) created by
- The nightly build reports Linux test failures when there aren't any.
- 1:50 PM Ticket #3145 (File history unreadable) closed by
- can't reproduce: Saw this once before. Not sure how file history JSON file gets …
- 12:38 PM Ticket #1903 (Tabbed toolbar customization) closed by
- fixed: Done, modulo macOS Qt errors rearranging sections.
- 12:36 PM Ticket #1149 (bundles need test suites) closed by
- fixed: Developers need to add their own tests now :-)
- 12:12 PM Ticket #1482 (bundle-ize WebServices + improve docs) closed by
- fixed
- 12:10 PM Ticket #3060 (Adding images and descriptions to RBVI bundles) closed by
- fixed: have apportioned the list to the corresponding programmers
- 11:58 AM Ticket #1173 (Ribbon normalization error) closed by
- fixed: This appears to have been fixed.
- 11:12 AM Ticket #3150 (open/save severely hampered) closed by
- fixed: Okay, I've committed a fix that works in my testing.
- 8:59 AM Ticket #3155 (Model panel problem) closed by
- duplicate
- 8:58 AM Ticket #3154 (Model panel problem) closed by
- can't reproduce: Seen this once before. I *believe* it indicates that a level in the …
- 3:15 AM Ticket #3157 (License string not "Sphinx compliant") created by
- Just a minor formatting issue, by the looks of it. On the license …
- 2:29 AM Ticket #3156 (Error initializing context: clGetPlatformIDs) created by
- […]
May 6, 2020:
- 9:37 PM Ticket #3155 (Model panel problem) created by
- […]
- 9:37 PM Ticket #3154 (Model panel problem) created by
- […]
- 6:32 PM Ticket #3153 (Mac ChimeraX not registered to open PDB, mmCIF, MRC, ....) created by
- […]
- 3:29 PM Ticket #3131 (Read CCD CIFs directly) closed by
- fixed: Error was only happening for fetch-only formats. SMILES suffered from …
- 2:50 PM Ticket #3137 (SeggerX and save dialog need updating) closed by
- fixed: Fixed. Ok, the Segger File / Save... menu now sets the Save dialog …
- 11:02 AM Ticket #3152 (Toolbar icon rollover → crash) created by
- […]
- 9:25 AM Ticket #3148 (pb_scene_coord returning None) closed by
- duplicate: Error showing pseudobonds fixed a month ago. Use a ChimeraX daily …
- 8:46 AM Ticket #3151 (Close session: clipper: 'SymmetryManager' object has no attribute ...) closed by
- fixed: This should be fixed in the latest version (for ChimeraX 0.93). Could …
- 8:24 AM Ticket #3149 (arrays moved to bundle) closed by
- fixed
- 8:19 AM Ticket #3147 (Crash moving window) closed by
- can't reproduce
- 4:35 AM Ticket #3151 (Close session: clipper: 'SymmetryManager' object has no attribute ...) created by
- […] errorWhenSavingSession.rtf
- 4:15 AM Ticket #3150 (open/save severely hampered) created by
- […]
- 1:39 AM Ticket #3149 (arrays moved to bundle) created by
- […]
May 5, 2020:
- 8:56 PM ChangeLog edited by
- (diff)
- 5:11 PM Ticket #3148 (pb_scene_coord returning None) created by
- […]
- 3:25 PM Ticket #3146 (balloon help does not respond to camera change) closed by
- not a bug: It's not a bug. The popup atom names appear when you move the mouse …
- 12:16 PM Ticket #3147 (Crash moving window) created by
- […]
- 11:28 AM Ticket #3146 (balloon help does not respond to camera change) created by
- […]
- 10:27 AM Ticket #3138 (Build out full side-chains for MD simulations) closed by
- fixed: Does the template give the hybridization of the heavy atom? If so, …
- 10:00 AM Ticket #3139 (Thread-safe Atom deletion) closed by
- wontfix: Glad I didn't need to add my own comments about what a bad idea this …
- 7:41 AM Ticket #3145 (File history unreadable) created by
- […]
- 7:14 AM Ticket #3144 (Map local resolution estimation) created by
- This is a really popular (and useful) tool to have these days - if …
- 1:21 AM Ticket #3143 (Starting simulation: Error initializing context: clGetDeviceIDs) created by
- […]
May 4, 2020:
- 5:00 PM Ticket #3142 (Identify regions of unoccupied density) created by
- Begin forwarded message: From: Tristan Croll Subject: Re: ISOLDE and …
- 4:53 PM Ticket #3141 (Measure fit of residue in map) created by
- Begin forwarded message: From: Tristan Croll Subject: Re: ISOLDE and …
- 4:51 PM Ticket #3140 (Compute zone triangle mask in C++ thread) created by
- I'm not sure what is being requested here. To mask a map isn't a copy …
- 4:31 PM Ticket #3091 (ToolInstance.delete(self) during session reset produces KeyError) closed by
- fixed: Believe this is fixed the #2110 fix -- removed maintaining a numerical …
- 4:28 PM Ticket #2110 (ToolInstance id problem restoring session) closed by
- fixed: Removed ToolInstance.id since it no longer needed.
- 4:23 PM Ticket #3139 (Thread-safe Atom deletion) created by
- Tristan suggests using a shared pointer for Atom to avoid deleting the …
- 4:18 PM Ticket #3138 (Build out full side-chains for MD simulations) created by
- Tristan wants to be able to add atoms to make complete side-chains …
- 3:29 PM Ticket #3130 (Session saving: surface color is None) closed by
- fixed: Fixed. Session saving failed because a surface colored by height had …
- 1:57 PM Ticket #3134 (Attempt to retrieve context when no valid context) closed by
- can't reproduce: OpenGL error rendering status bar on an expose event. It is pretty …
- 1:46 PM Ticket #3136 (Graphics driver crash) closed by
- nonchimerax: Mac graphics driver bug, crash reports "Graphics hardware encountered …
- 1:43 PM Ticket #3133 (glBlitFramebuffer: invalid operation) closed by
- duplicate: This bug was fixed last week. Get current ChimeraX daily build. It …
- 1:41 PM Ticket #3132 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') closed by
- duplicate: Fixed 4 weeks ago.
- 11:51 AM Ticket #3137 (SeggerX and save dialog need updating) created by
- […]
- 10:17 AM Ticket #3015 (Crash in Finder(?)) closed by
- can't reproduce
- 10:15 AM Ticket #2873 (PyQt icon image not changing) closed by
- can't reproduce: Seems to have disappeared with a different version of Qt.
- 7:22 AM Ticket #3136 (Graphics driver crash) created by
- […]
- 5:01 AM Ticket #3135 (OpenMM: Error initializing context: clGetPlatformIDs) created by
- […]
May 3, 2020:
May 2, 2020:
- 2:55 PM Ticket #3133 (glBlitFramebuffer: invalid operation) created by
- […]
- 7:51 AM Ticket #3132 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') created by
- […]
May 1, 2020:
- 6:47 PM Ticket #3131 (Read CCD CIFs directly) created by
- […] CRO.cif
- 6:20 PM Ticket #3029 (Add Color to Actions Menu) closed by
- fixed
- 4:09 PM Ticket #3130 (Session saving: surface color is None) created by
- […]
- 9:50 AM Ticket #3127 (Clicking file history thumbnail fails, ccp4 format not supported) closed by
- fixed: Fixed and have restarted the builds.
- 9:45 AM Ticket #3129 (Model panel confirm close) created by
- […]
- 9:42 AM Ticket #3128 (Open dialog generates 'open2' command) created by
- […]
Apr 30, 2020:
- 8:03 PM Ticket #3109 (Error drawing selection outline) closed by
- fixed: Fixed. Another reporter of this problem (ticket #3125) verified that …
- 7:58 PM Ticket #3125 (glBlitFramebuffer() error drawing selection outline) closed by
- fixed: Fixed in tonight's ChimeraX builds. The Linux VMware OpenGL driver …
- 7:28 PM Ticket #3127 (Clicking file history thumbnail fails, ccp4 format not supported) created by
- […]
- 6:20 PM Ticket #3124 (open2/save2 still used by dialogs) closed by
- fixed: The fix is in the build currently on the web site.
- 4:34 PM Ticket #3126 (Nucleotide stub takes 10 minutes to display for ribosome) created by
- […]
- 4:23 PM Ticket #3125 (glBlitFramebuffer() error drawing selection outline) created by
- […]
- 3:16 PM Ticket #3124 (open2/save2 still used by dialogs) created by
- […]
- 2:27 PM Ticket #3123 (self.positions is None) created by
- […] non-rot-eco-4v9d-no-ssu.pdb
- 12:45 PM Ticket #3030 (Add Label to Actions Menu) closed by
- fixed
- 11:00 AM Ticket #3122 (sse.py → scipy cannot import _uarray) closed by
- nonchimerax: scipy could not import one of its private compiled libraries _uarray …
- 1:02 AM Ticket #3122 (sse.py → scipy cannot import _uarray) created by
- […]
Apr 29, 2020:
- 3:00 PM Ticket #3120 (setting fixed pixel height for labels → traceback) closed by
- fixed: Fixed. When the label command default_height option was added the …
- 2:48 PM Ticket #3121 (Better 2D label quality in saved images) closed by
- fixed: Fixed. 2d labels now adjust texture size for image saving and also …
- 2:40 PM Ticket #3121 (Better 2D label quality in saved images) created by
- […]
- 2:15 PM Ticket #3119 (pseudobond's atoms pb_scene_coord is None(?)) closed by
- duplicate: Hi Jeremy, Thanks for reporting this problem. It was fixed two days …
- 2:11 PM Ticket #3120 (setting fixed pixel height for labels → traceback) created by
- […]
- 1:26 PM Ticket #3117 (2D labels size wrong if saved image size not same as window size) closed by
- fixed: Fixed. 2D labels were stretched when saved image had different aspect …
- 12:54 PM Ticket #3119 (pseudobond's atoms pb_scene_coord is None(?)) created by
- […]
- 9:27 AM Ticket #3116 (computeSs documented as computeSS) closed by
- fixed: fixed in documentation for coordset, dssp, matchmaker, morph
- 9:17 AM Ticket #3118 (ISOLDE/OpenMM: trouble loading DLL) closed by
- fixed: This was caused by a bug in the Intel MKL library used by Numpy …
- 7:49 AM Ticket #3118 (ISOLDE/OpenMM: trouble loading DLL) created by
- […]
- 7:22 AM Ticket #3117 (2D labels size wrong if saved image size not same as window size) created by
- […] bug4.cxc
- 6:59 AM Ticket #3116 (computeSs documented as computeSS) created by
- […] bug3.cxc
Apr 28, 2020:
- 1:58 PM Ticket #3062 (Adding images and descriptions to RBVI bundles) closed by
- fixed: All the bundles assigned to me seem like they should be standard, and …
- 11:36 AM Ticket #2830 (Allow Toolshed uploads with dependencies on daily build bundles) closed by
- fixed: Dependency check no longer prevents bundle submission.
- 11:28 AM Ticket #3113 (Surface caps: Array argument has non-numeric values) closed by
- duplicate: Fixed in July 31, 2019. Duplicate #2277
- 11:26 AM Ticket #3115 (Dead Volume Eraser still responding to events) closed by
- fixed: Fixed in tonight's ChimeraX builds. Map eraser mouse mode tried to …
- 6:29 AM Ticket #3115 (Dead Volume Eraser still responding to events) created by
- […]
- 1:39 AM Ticket #3114 (Improve session-saving error information) created by
- […]
Apr 27, 2020:
- 7:35 PM Ticket #3113 (Surface caps: Array argument has non-numeric values) created by
- […]
- 4:18 PM Ticket #3112 (geometry.find_closest_points index problem(?)) closed by
- fixed: Fixed doc string. Now reads near1numpy int32 array A third array is …
- 10:54 AM Ticket #3111 (Errors restoring maps produces inconsistent state) closed by
- can't reproduce: There were many errors restoring this sessions where volume data …
- 8:39 AM Ticket #3110 (wrapped C/C++ object of type MultiColorButton has been deleted) closed by
- can't reproduce
- 2:37 AM Ticket #3112 (geometry.find_closest_points index problem(?)) created by
- […]
Apr 25, 2020:
- 4:30 PM Ticket #3111 (Errors restoring maps produces inconsistent state) created by
- […]
- 3:49 PM Ticket #3110 (wrapped C/C++ object of type MultiColorButton has been deleted) created by
- […]
- 11:34 AM Ticket #3109 (Error drawing selection outline) created by
- […]
Apr 24, 2020:
- 7:26 PM Ticket #1532 (Improve deferring of subcommand registration) closed by
- fixed
- 7:25 PM Ticket #2600 (Problem with "toolshed show") closed by
- fixed: Done.
- 7:18 PM Ticket #1771 ("devel install" cannot link OpenMM.lib) closed by
- fixed: Done.
- 4:33 PM Ticket #2250 (Simplify tool-author look up) closed by
- wontfix: For (2), until there is actually a high volume of new developers, just …
- 4:25 PM Ticket #3102 (volume subregion: 'NoneType' object has no attribute 'size') closed by
- fixed: Fixed. A clip cap of one map was colored by volume data value of …
- 4:23 PM Ticket #3022 (ISOLDE used with incompatible ChimeraX) closed by
- fixed: 0.93 is out. This problem should not crop up with future versions.
- 3:52 PM Ticket #2771 (_openmm fails to load) closed by
- fixed: Lastest numpy has the lastest MKL which has the fix. And is installed …
- 3:51 PM Ticket #2749 (ISOLDE installed into incompatible Ubuntu build of ChimeraX) closed by
- fixed: Fixed by common Linux ABI
- 3:41 PM Ticket #2710 (Somewhat mysterious warning when building bundles) closed by
- fixed: Testing has been removed from bundle builder.
- 3:34 PM Ticket #2694 (Autoscale ToolShed downloads graph widget) closed by
- wontfix: Lost this functionality in the Python3 version of the toolshed. A CSV …
- 3:28 PM Ticket #2672 (Toolshed down) closed by
- fixed
- 3:27 PM Ticket #2649 (Toolshed details does not display http link markup correctly.) closed by
- fixed: Conrad fixed regex in Markdown.Converter.js.
- 3:05 PM Ticket #2618 (Web page to release bundles on Tool Shed is broken) closed by
- fixed
- 2:01 PM Ticket #3025 (Installing bundle doesn't add its providers) closed by
- fixed
- 1:27 PM Ticket #1666 (bundle_info.xml DataFormat classifier needs allow_directory option) closed by
- fixed: The data-formats manager supports an "allow_directory" attribute.
- 1:14 PM Ticket #1976 ("is_default" does nothing in Open and Save ChimeraXClassifier) closed by
- fixed: I believe the issue is moot at this point, but with the new …
- 12:57 PM Ticket #2592 (Can't install ISOLDE for everyone) closed by
- duplicate: Work will be tracked in #2593.
- 12:39 PM Ticket #2444 (Weird import errors) closed by
- can't reproduce: Might be because user ran new version, resulting in new bundle cache, …
- 12:36 PM Ticket #2425 (ISOLDE cannot find symbol atomstruct::Residue::find_atom) closed by
- fixed: Fixed by common Linux ABI.
- 12:33 PM Ticket #2174 (Could not install ISOLDE/Clipper: EnvironmentError) closed by
- fixed: Can't install globally anymore.
- 12:30 PM Ticket #2087 (Problem with distutils-generated loader flags) closed by
- fixed
- 12:27 PM Ticket #1961 (Toolshed US download map not colored) closed by
- wontfix: GeoIP data costs real money now.
- 12:24 PM Ticket #1862 (Some funkiness installing wheels needing tilde expansion) closed by
- fixed: Use os.path.expanduser() to expand ~.
- 12:16 PM Ticket #1845 ("toolshed install" errors reporting to status bar rather than log) closed by
- duplicate: Work is happening in #3055.
- 12:14 PM Ticket #1819 (Problem with PyPI dependencies (or dependencies of dependencies?)) closed by
- duplicate: Work is happening in #3055.
- 12:12 PM Ticket #1546 ("Nightly build" system for Tool Shed) closed by
- duplicate: Duplicate of #1787.
- 12:09 PM Ticket #1786 (Naming of development bundles) closed by
- fixed: We now conform to PEP 440 version numbers.
- 12:00 PM Ticket #1766 (Permission denied installing Clipper) closed by
- fixed: No response.
- 11:58 AM Ticket #1686 ('ChimeraX -m pip install mdtraj' causes GUI to repeatedly flash up) closed by
- wontfix: Conrad says "I can live with that".
- 11:57 AM Ticket #1672 (Library linking failure after ISOLDE install) closed by
- fixed: Fixed by requiring all Linux binary bundles be built on the same …
- 11:55 AM Ticket #1650 (IncludeDir argument in bundle_info.xml no longer recognises $HOME) closed by
- wontfix: Conrad says don't use $HOME.
- 11:53 AM Ticket #1640 ('toolshed install isolde reinstall true' attempts to install wrong ...) closed by
- fixed: Workaround is use ~=VERSION in dependencies.
- 11:49 AM Ticket #1521 ('devel install' failing for RedHat rpm builds) closed by
- fixed: The include files are now in the CentOS 7 rpm.
- 11:45 AM Ticket #1402 (Bundle's own compiled libraries should be at top of symbol search path) closed by
- wontfix: Symbols from an already loaded library override subsequent loads.
- 11:35 AM Ticket #1278 (Option to only rebuild Python component of bundle) closed by
- wontfix: setup.py might be smart enough to limit the compile to just the Python …
- 11:34 AM Ticket #1106 (Dependencies on other bundle's include dirs) closed by
- duplicate: Dup of #1022.
- 11:33 AM Ticket #1104 (Installing ISOLDE gives traceback, needs user-friendly error message) closed by
- fixed: ChimeraX no longer tries to install incompatible packages.
- 11:30 AM Ticket #1099 (PyPI dependency fail on 'make app-install') closed by
- fixed: Using newer OpenSSL now.
- 11:28 AM Ticket #1089 (Option to recursively include contents of directory in bundle) closed by
- fixed: Added <DataDir> option to <DataFiles> section in bundle_info.xml
- 11:25 AM Ticket #1022 (Allow Toolshed bundles to provide access to their C++ API) closed by
- fixed: If bundle is dependent on another bundle, bundle_builder will add the …
- 11:23 AM Ticket #958 (Toolshed offers to install Linux bundle on Mac) closed by
- fixed
- 11:05 AM Ticket #1646 (Clip broken + depth cueing question) closed by
- fixed: This problem was mostly solved by having the clip command warn when …
- 11:03 AM Ticket #3108 (Allow clip command to specify positions relative to center of rotation) created by
- Would like the "fromCenter true" option that Chimera has for setting …
- 10:59 AM Ticket #3107 (Enable depth cue with mesh lighting off) created by
- Currently depth cue is considered part of lighting and the setting …
- 10:59 AM Ticket #2805 (Update toolshed to Python3 and more recent django) closed by
- fixed
- 10:57 AM Ticket #3106 (Side view shows wrong clip positions when near plane is behind far plane) created by
- Oliver Clarke accidentally put the near clip plane behind the far clip …
- 10:43 AM Ticket #2571 (No mail/feedback) closed by
- can't reproduce: No response.
- 10:04 AM Ticket #3104 (Adjusting cage-builder edge length: 'NoneType' object has no attribute ...) closed by
- fixed: Fixed in tonight's ChimeraX build. The problem was not with edge …
- 9:33 AM Ticket #3103 (Strudel Score can't write its own config file) closed by
- can't reproduce
- 9:22 AM Ticket #3105 (addh wrong hydrogen name on glycosylated Asn residues) created by
- When the asparagine is glycosylated, since there is only one hydrogen …
- 5:34 AM Ticket #3104 (Adjusting cage-builder edge length: 'NoneType' object has no attribute ...) created by
- […]
- 5:08 AM Ticket #3103 (Strudel Score can't write its own config file) created by
- […]
- 12:19 AM Ticket #2520 (ISOLDE synopsis in User Guide Index should link to ISOLDE website) closed by
- fixed: Fixed getting generated user manual index with accessing via a href. …
Apr 23, 2020:
- 5:42 PM RestAPI edited by
- (diff)
- 5:39 PM RestAPI edited by
- (diff)
- 5:34 PM RestAPI edited by
- (diff)
- 5:31 PM RestAPI edited by
- (diff)
- 5:24 PM RestAPI created by
- 5:14 PM Features edited by
- (diff)
- 2:20 PM Ticket #3102 (volume subregion: 'NoneType' object has no attribute 'size') created by
- […]
- 1:46 PM Ticket #3101 (save mmCIF after opening PDB gives AttributeError: 'NoneType' object ...) closed by
- duplicate: Duplicate of #3047. Fixed earlier today.
- 1:41 PM Ticket #2825 (Residue::find_atom() being looked for in isolde/libmolc.so) closed by
- fixed: Now have common Linux ABI.
- 1:38 PM Ticket #3101 (save mmCIF after opening PDB gives AttributeError: 'NoneType' object ...) created by
- […]
- 11:14 AM Ticket #3047 (Problem writing 'software' info to mmCIF) closed by
- fixed
- 9:56 AM Ticket #3100 (IndexError during ribbon pick) closed by
- duplicate: Hi Karim, Thanks for reporting this problem. It was fixed just a …
- 9:28 AM Ticket #3099 (auto-wipe some commands?) reopened by
- Yeah, we're not fans of this particular paternalistic behavior. I …
- 9:12 AM Ticket #3099 (auto-wipe some commands?) closed by
- wontfix: Yeah, actually neither the Actions menu nor the toolbar icons use the …
- 7:04 AM Ticket #3100 (IndexError during ribbon pick) created by
- […]
- 3:32 AM Ticket #3099 (auto-wipe some commands?) created by
- […]
Apr 22, 2020:
- 5:00 PM Ticket #2634 (Crash clicking help-browser link) closed by
- fixed: Does not crash on macOS 10.13 with current daily build that has Qt 5.12.8.
- 4:51 PM Ticket #2782 (Some help files crash ChimeraX) closed by
- fixed: Unable to reproduce with daily build (Qt 5.12.8).
- 11:46 AM Ticket #3097 (Undeposited structure: 'NoneType' object has no attribute 'isupper') closed by
- fixed: Fixed in the next build. The issue was with the HETNAM record for …
- 11:22 AM Ticket #3096 (Session restore failure: ValueError: int is not allowed for map key) closed by
- duplicate: Hi Ondrej, This bug was fixed just yesterday, so if you get today's …
- 11:08 AM Covid19Grant edited by
- (diff)
- 11:07 AM Covid19Grant created by
- 11:05 AM WikiStart edited by
- (diff)
- 11:03 AM WikiStart edited by
- (diff)
- 11:01 AM WikiStart edited by
- (diff)
- 10:33 AM Ticket #3098 (Add fitmap option to low pass filter before fitting) created by
- Would be convenient to have a fitmap command option to low pass filter …
- 7:39 AM Ticket #3097 (Undeposited structure: 'NoneType' object has no attribute 'isupper') created by
- […]
- 12:10 AM Ticket #3096 (Session restore failure: ValueError: int is not allowed for map key) created by
- […]
Apr 21, 2020:
- 9:52 PM Ticket #2570 (Some help files crash ChimeraX) closed by
- fixed: Just revised the daily build to use PyQt 5.12.3 with Qt 5.12.8. And I …
- 5:11 PM PhenixTools created by
- 5:05 PM WikiStart edited by
- (diff)
- 4:11 PM Ticket #3084 (Inserted fragments should update missing-structure pseudobonds) closed by
- fixed: The insertion now automatically updates the missing-structure …
- 3:14 PM Ticket #3059 (Toolshed bundle release page does not work) closed by
- fixed: Works well enough for now.
- 2:38 PM Ticket #3095 (Crash in WebEngine trying to access Qt) closed by
- can't reproduce: Hi Amedee, It looks like this crash occurred with the 0.8 version of …
- 2:28 PM Ticket #3093 (Error forming missing-structure pseudobonds to internally disconnected ...) closed by
- fixed: Just pushed a fix.
- 2:18 PM Ticket #2625 (Problems with dependency version specifiers when uploading to Tool Shed) closed by
- fixed: All of those version specifiers are now accepted.
- 12:19 PM Ticket #3095 (Crash in WebEngine trying to access Qt) created by
- […]
- 11:45 AM Ticket #3088 (Crash initializing OpenGL) closed by
- can't reproduce: Qt crashing trying to initialize some OpenGL on a window resize. …
- 11:21 AM Ticket #3086 (IndexError during ribbon pick) closed by
- fixed: Fixed. Sorted triangle ranges was not reset so had value from first …
- 10:41 AM Ticket #3094 (Ribbon error after deleting atoms) closed by
- fixed: Fixed. An empty ribbon residue range caused this error due to a bug …
- 10:29 AM Ticket #3089 (Session restore failure: ValueError: int is not allowed for map key) closed by
- fixed: Fixed in the next daily build. Bug was due to change in msgpack 1.0 …
- 10:25 AM Ticket #3094 (Ribbon error after deleting atoms) created by
- […]
- 10:04 AM Ticket #3090 (open2 not handling TIFF stack correctly) closed by
- fixed: format-name checking also needed to check against prefixes
- 9:55 AM Ticket #3093 (Error forming missing-structure pseudobonds to internally disconnected ...) created by
- […]
- 9:26 AM Ticket #3080 (ImportError: cannot import name 'RibbonDrawing' from ...) closed by
- duplicate: This was fixed 10 days ago. Get a current daily build. Problem is …
- 9:18 AM Ticket #3092 (pb_scene_coord returning None) closed by
- duplicate: Hi Kasey, Thanks for reporting this problem. It has been fixed in …
- 9:04 AM Ticket #3087 (Sequence-association problem upon 'split') closed by
- duplicate: Hi, I believe this problem is fixed in newer releases of ChimeraX. …
- 8:09 AM Ticket #3092 (pb_scene_coord returning None) created by
- […]
- 7:58 AM Ticket #3091 (ToolInstance.delete(self) during session reset produces KeyError) created by
- […]
Apr 20, 2020:
- 9:57 PM Ticket #3090 (open2 not handling TIFF stack correctly) created by
- […]
- 5:51 PM Ticket #3089 (Session restore failure: ValueError: int is not allowed for map key) created by
- […]
- 5:47 PM Ticket #3088 (Crash initializing OpenGL) created by
- […]
- 4:58 PM Ticket #3087 (Sequence-association problem upon 'split') created by
- […] split model.html split model-1.html
- 4:41 PM Ticket #3044 (document pseudobond group create_type arg) closed by
- fixed: Okay, that argument is documented now.
- 4:15 PM Ticket #3086 (IndexError during ribbon pick) created by
- […]
- 2:44 PM Ticket #3078 (ribbon cross section: unsupported operand type(s) for *: 'float' and ...) closed by
- fixed: Fixed. The helix tube radius is normally calculated for each helix. …
- 2:15 PM Ticket #3085 (sequence viewer messed up when fragment inserted into missing-structure gap) created by
- Doesn't crash it, but the deleted residues appear as missing and their …
- 2:12 PM Ticket #3084 (Inserted fragments should update missing-structure pseudobonds) created by
- summary pretty much covers it
- 11:53 AM Ticket #3083 (partially numeric residue name not handled by atom spec) closed by
- fixed: Fixed in 6f9e798ad. "92D" looks like "residue 92 insert …
- 11:42 AM Ticket #3074 (Mac Catalina prevent toolbar image save to desktop) closed by
- can't reproduce: macOS Catalina asks permission to access Downloads, Desktop and …
- 10:24 AM Ticket #3083 (partially numeric residue name not handled by atom spec) created by
- in structure 5val, "sel :92D" does not select the ligand.
- 9:58 AM Ticket #3082 (Molecular Docking problem) closed by
- not a bug: Redirected to chimera-users
- 9:56 AM Ticket #3081 (ISOLDE cannot link Residue::find_atom) closed by
- duplicate
- 9:29 AM Ticket #3077 (pb_scene_coord: Cannot multiply Place times "None") closed by
- duplicate
- 9:21 AM Ticket #3076 (run .cxc file) closed by
- not a bug: Hi, The 'runscript' command is for executing Python scripts, not …
- 8:37 AM Ticket #3082 (Molecular Docking problem) created by
- […]
- 8:25 AM Ticket #3081 (ISOLDE cannot link Residue::find_atom) created by
- […]
- 4:09 AM Ticket #3080 (ImportError: cannot import name 'RibbonDrawing' from ...) created by
- […]
Apr 19, 2020:
- 10:04 PM Ticket #3079 (Registration failure (while plato was down)) created by
- […]
- 6:41 AM Ticket #3078 (ribbon cross section: unsupported operand type(s) for *: 'float' and ...) created by
- […]
Apr 18, 2020:
- 2:09 PM Ticket #3075 (Slow coloring of large molecular surfaces) closed by
- fixed: Fixed. 100x faster now on 6owg test case (0.3 seconds instead of 30 …
- 7:17 AM Ticket #3077 (pb_scene_coord: Cannot multiply Place times "None") created by
- […]
- 3:07 AM Ticket #3076 (run .cxc file) created by
- […]
Apr 17, 2020:
- 8:55 PM Ticket #3067 (Bug reporter losing log text) closed by
- fixed: Fixed.
- 7:18 PM Ticket #3075 (Slow coloring of large molecular surfaces) created by
- […]
- 6:12 PM ChangeLog edited by
- (diff)
- 3:50 PM Ticket #3073 (empty surfaces slow things down) closed by
- not a bug: ~surface is an alias for "surface hide". (The command "alias …
- 2:54 PM Ticket #3069 (Delete backbone atom while ribbon displayed: Cylinder end-point and ...) closed by
- fixed: Fixed. Deleting a CA atom for a residue showing a ribbon caused this …
- 12:49 PM Ticket #3074 (Mac Catalina prevent toolbar image save to desktop) created by
- […]
- 11:43 AM Ticket #3072 ("chains" that are not polymers) closed by
- not a bug: Well, obviously a chain is a series of connected polymeric residues, …
- 11:31 AM Ticket #3073 (empty surfaces slow things down) created by
- […]
- 11:18 AM Ticket #3070 (Inter-residue bonds should not select residues) closed by
- fixed
- 10:35 AM Ticket #3066 (Actions menu: no visible models produces error) closed by
- fixed
- 9:56 AM Ticket #3072 ("chains" that are not polymers) created by
- […]
- 9:34 AM Ticket #3071 (Crash in ~Structure) closed by
- can't reproduce: old version of ChimeraX
- 9:22 AM Ticket #3071 (Crash in ~Structure) created by
- […]
- 8:19 AM Ticket #3070 (Inter-residue bonds should not select residues) created by
- […]
- 12:29 AM Ticket #3069 (Delete backbone atom while ribbon displayed: Cylinder end-point and ...) created by
- […]
Apr 16, 2020:
- 8:40 PM Ticket #3068 (Crash starting ISOLDE) created by
- […]
- 8:26 PM Ticket #3067 (Bug reporter losing log text) created by
- […] Screen Shot 2020-04-16 at 8.23.06 PM.png
- 8:20 PM Ticket #3066 (Actions menu: no visible models produces error) created by
- […]
- 7:05 PM ChangeLog edited by
- (diff)
- 7:02 PM ChangeLog edited by
- (diff)
- 7:00 PM ChangeLog edited by
- (diff)
- 5:14 PM Ticket #3051 (Error building core related to version number changing) closed by
- fixed: Fixed core to always regenerate the setup.py and buildinfo.py files …
- 4:36 PM ChangeLog edited by
- (diff)
- 3:59 PM Ticket #3065 (ISOLDE simulation stopped: 'OpenMM_Thread_Handler' object has no ...) created by
- […]
- 3:26 PM Ticket #3057 (pseudobond's atoms pb_scene_coord is None(?)) closed by
- fixed: Fixed. I changed Atom.ribbon_coord to return None instead of throwing …
- 12:56 PM Ticket #3064 (Adding images and descriptions to RBVI bundles) created by
- Conrad's subset from #3060 master list of bundles. After bundles have …
- 12:54 PM Ticket #3063 (Adding images and descriptions to RBVI bundles) created by
- Greg's subset from #3060 master list of bundles. After bundles have …
- 12:53 PM Ticket #3062 (Adding images and descriptions to RBVI bundles) created by
- Eric's subset from #3060 master list of bundles. After bundles have …
- 12:49 PM Ticket #3061 (Adding images and descriptions to RBVI bundles) created by
- TomG's subset from #3060 master list of bundles. After bundles have …
- 12:34 PM PhenixChimeraX edited by
- (diff)
- 11:56 AM Ticket #3060 (Adding images and descriptions to RBVI bundles) created by
- After bundles have been added to the toolshed, they need to be edited …
- 11:16 AM Ticket #3059 (Toolshed bundle release page does not work) reopened by
- It looks like my request gets into an authentication loop: GET …
- 11:01 AM Ticket #3059 (Toolshed bundle release page does not work) closed by
- worksforme: Works for me. Maybe you tried it when I briefly broke it while …
- 10:51 AM Ticket #3059 (Toolshed bundle release page does not work) created by
- The bundle release page …
- 10:47 AM Ticket #3058 (Automate putting release (and daily) wheels on toolshed) created by
- When a release is made, all wheels other than core should be placed on …
- 10:42 AM Ticket #3057 (pseudobond's atoms pb_scene_coord is None(?)) created by
- […]
- 10:32 AM Ticket #3054 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') closed by
- duplicate: duplicate of #3024
- 10:18 AM Ticket #3050 (OpenMM: User-supplied template does not match the residue) closed by
- fixed: The traceback is suppressed in more recent ISOLDE builds, so closing …
- 10:14 AM Ticket #3052 (Toolbar icon image save → can't access Desktop) closed by
- nonchimerax
- 9:02 AM Ticket #3056 (ISOLDE's ToolShed entry broken) closed by
- fixed: The 1.0b5.1 has been removed. Will change bundle submission code to …
- 8:12 AM Ticket #3056 (ISOLDE's ToolShed entry broken) created by
- I'm afraid I just broke ISOLDE's ToolShed entry by uploading a bundle …
- 6:57 AM Ticket #3055 (Add ParmEd to ChimeraX's standard bundles) created by
- I think I brought this up once before, but can't find an existing …
- 3:02 AM Ticket #3054 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') created by
- […]
Apr 15, 2020:
- 10:22 PM Ticket #3053 (Click logged command → crash) created by
- […]
- 7:37 PM Ticket #3052 (Toolbar icon image save → can't access Desktop) created by
- […]
- 6:50 PM Ticket #3051 (Error building core related to version number changing) created by
- […]
- 2:28 PM Ticket #3050 (OpenMM: User-supplied template does not match the residue) created by
- […]
- 2:22 PM Ticket #3049 (OpenMM coordinate update: RuntimeError: Release Object) created by
- […]
- 2:13 PM Ticket #3046 (bundles missing in the Linux build?) closed by
- fixed: Confirmed that there are no chimerax.atomic.rotamers.libs in the Linux …
- 9:35 AM Ticket #3048 (Graphics error drawing selection) closed by
- nonchimerax: Duplicate. Graphics driver problem with VMWare / Mesa 19.2.8 drawing …
- 8:56 AM Ticket #3045 (Merging models/fragments) closed by
- not a bug: Information relevant to ticket #2236; referred to this ticket there
- 6:45 AM Ticket #3048 (Graphics error drawing selection) created by
- […]
- 3:43 AM Ticket #3047 (Problem writing 'software' info to mmCIF) created by
- […]
Apr 14, 2020:
- 2:47 PM Ticket #3046 (bundles missing in the Linux build?) created by
- […]
- 10:56 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') closed by
- duplicate
- 10:56 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') reopened by
- 10:56 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') closed by
- fixed: Duplicate, fixed a few days ago.
- 8:52 AM Ticket #3045 (Merging models/fragments) created by
- I understand adding a "merge models" command has been on the to-do …
- 8:45 AM Ticket #3042 (Using wrong Linux distro?) closed by
- duplicate: Yep - duplicate of #2214. Should go away once people update to 0.93 …
- 7:50 AM Ticket #3044 (document pseudobond group create_type arg) created by
- […]
- 6:29 AM Ticket #3043 (Save a residue as mmCIF template) created by
- Would be great to have the ability to save a given residue as a mmCIF …
- 3:30 AM Ticket #3038 (Restoring session: 'SymmetryManager' object has no attribute '_unit_cell') closed by
- fixed: Fixed. I'd like to get a couple of other things done before pushing a …
- 12:58 AM Ticket #3042 (Using wrong Linux distro?) created by
- […]
- 12:05 AM Ticket #3009 (add ability to add software citations to mmCIF files) closed by
- fixed: Was already working on this. Added …
Apr 13, 2020:
- 12:15 PM Ticket #3040 (Error with close session) closed by
- fixed: Guard against state_containers changing during reset.
- 11:41 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') created by
- […]
- 11:38 AM Ticket #3039 (crash in glDeleteBuffers) closed by
- can't reproduce: Probable graphics driver bug. "Graphics hardware encountered an error …
- 11:32 AM Ticket #3040 (Error with close session) created by
- […] orig.cxs
- 9:23 AM Ticket #3033 (OpenMM: 'coords' is None) closed by
- duplicate: Duplicate of #2990. Fixed in the latest build.
- 9:13 AM Ticket #3035 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') closed by
- duplicate: duplicate of #3024
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