Opened 6 years ago
Last modified 6 years ago
#3128 accepted defect
Open dialog generates 'open2' command
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Elaine Meng | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.3.0-x86_64-i386-64bit
ChimeraX Version: 0.94 (2020-05-01)
Description
open any file generates an error.
open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active site non-covalent - ver-2020-03-24/Mpro-x1077.pdb"
copying the above and changing open2 to open corrects the bug.
I figured COVID is a good excuse to learn the new Chimera! You all look great in the splash screen too.
Best,
Wally
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 0.94.dev202005010036 (2020-05-01)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> help help:quickstart
> open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active
> site non-covalent - ver-2020-03-24/Mpro-x1077.pdb"
Unknown command: open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen -
pdbs - active site non-covalent - ver-2020-03-24/Mpro-x1077.pdb"
> open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active
> site non-covalent - ver-2020-03-24/Mpro-x0161.pdb"
Unknown command: open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen -
pdbs - active site non-covalent - ver-2020-03-24/Mpro-x0161.pdb"
> open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active
> site non-covalent - ver-2020-03-24/Mpro-x0434.pdb" format pdb
Unknown command: open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen -
pdbs - active site non-covalent - ver-2020-03-24/Mpro-x0434.pdb" format pdb
> open2 /Users/novakw/Downloads/sketcher.sdf
Unknown command: open2 /Users/novakw/Downloads/sketcher.sdf
> open /Users/novakw/Downloads/sketcher.sdf
> close all
> open "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active site
> non-covalent - ver-2020-03-24/Mpro-x1077.pdb"
Mpro-x1077.pdb title:
\--- [more info...]
Chain information for Mpro-x1077.pdb #1
---
Chain | Description
A | No description available
Non-standard residues in Mpro-x1077.pdb #1
---
DMS — (DMS)
LIG — (LIG)
OpenGL version: 4.1 ATI-3.5.5
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac19,2
Processor Name: 6-Core Intel Core i5
Processor Speed: 3 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 9 MB
Memory: 16 GB
Boot ROM Version: 1037.80.34.0.0
SMC Version (system): 2.47f3
Software:
System Software Overview:
System Version: macOS 10.15.3 (19D76)
Kernel Version: Darwin 19.3.0
Time since boot: 6 days 1:12
Graphics/Displays:
Radeon Pro 560X:
Chipset Model: Radeon Pro 560X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00c2
ROM Revision: 113-C981AA-042
VBIOS Version: 113-C9819A1X-009
EFI Driver Version: 01.B1.042
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 4096 x 2304 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Change History (2)
comment:1 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Input/Output |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Open dialog generates 'open2' command |
comment:2 by , 6 years ago
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Hi Wally,
--Eric