Opened 5 years ago

Last modified 5 years ago

#3128 accepted defect

Open dialog generates 'open2' command

Reported by: novakw@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc: Elaine Meng
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-19.3.0-x86_64-i386-64bit
ChimeraX Version: 0.94 (2020-05-01)
Description
open any file generates an error. 

open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active site non-covalent - ver-2020-03-24/Mpro-x1077.pdb"

copying the above and changing open2 to open corrects the bug.

I figured COVID is a good excuse to learn the new Chimera! You all look great in the splash screen too.

Best,
Wally

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 0.94.dev202005010036 (2020-05-01)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> help help:quickstart

> open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active
> site non-covalent - ver-2020-03-24/Mpro-x1077.pdb"

Unknown command: open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen -
pdbs - active site non-covalent - ver-2020-03-24/Mpro-x1077.pdb"  

> open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active
> site non-covalent - ver-2020-03-24/Mpro-x0161.pdb"

Unknown command: open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen -
pdbs - active site non-covalent - ver-2020-03-24/Mpro-x0161.pdb"  

> open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active
> site non-covalent - ver-2020-03-24/Mpro-x0434.pdb" format pdb

Unknown command: open2 "/Users/novakw/Desktop/Mpro/Mpro full XChem screen -
pdbs - active site non-covalent - ver-2020-03-24/Mpro-x0434.pdb" format pdb  

> open2 /Users/novakw/Downloads/sketcher.sdf

Unknown command: open2 /Users/novakw/Downloads/sketcher.sdf  

> open /Users/novakw/Downloads/sketcher.sdf

> close all

> open "/Users/novakw/Desktop/Mpro/Mpro full XChem screen - pdbs - active site
> non-covalent - ver-2020-03-24/Mpro-x1077.pdb"

Mpro-x1077.pdb title:  
\--- [more info...]  
  
Chain information for Mpro-x1077.pdb #1  
---  
Chain | Description  
A | No description available  
  
Non-standard residues in Mpro-x1077.pdb #1  
---  
DMS — (DMS)  
LIG — (LIG)  
  




OpenGL version: 4.1 ATI-3.5.5
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac19,2
      Processor Name: 6-Core Intel Core i5
      Processor Speed: 3 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 9 MB
      Memory: 16 GB
      Boot ROM Version: 1037.80.34.0.0
      SMC Version (system): 2.47f3

Software:

    System Software Overview:

      System Version: macOS 10.15.3 (19D76)
      Kernel Version: Darwin 19.3.0
      Time since boot: 6 days 1:12

Graphics/Displays:

    Radeon Pro 560X:

      Chipset Model: Radeon Pro 560X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x8
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67ef
      Revision ID: 0x00c2
      ROM Revision: 113-C981AA-042
      VBIOS Version: 113-C9819A1X-009
      EFI Driver Version: 01.B1.042
      Metal: Supported, feature set macOS GPUFamily2 v1
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: 4096 x 2304 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal

Change History (2)

comment:1 by Eric Pettersen, 5 years ago

Cc: Elaine Meng added
Component: UnassignedInput/Output
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionOpen dialog generates 'open2' command

comment:2 by Eric Pettersen, 5 years ago

Hi Wally,

Oops. Most of the day builds work better than yesterday's, honest! Fixed now and the the fix will be available tomorrow.
Yeah, we're all picking up new "skillz" during this pandemic. I figured out how to make my Zoom background into an asteroid. Thought I might list that as one of my skills on LinkedIn. Hope all is going well with you. Stay healthy! Also, you are far too generous with the "you all look good" thing. LOL.

--Eric

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