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Opened 6 years ago
Closed 6 years ago
#3051 closed defect (fixed)
Error building core related to version number changing
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Build System | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-19.4.0-x86_64-i386-64bit ChimeraX Version: 0.94 (2020-04-14) Description make install in core gives an error apparently because of the new version number with date stamp. This should work without having to do a make clean. /Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/bin/python3.7 -m pip install -U dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl WARNING: Requirement 'dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl' looks like a filename, but the file does not exist Processing ./dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl ERROR: Could not install packages due to an EnvironmentError: [Errno 2] No such file or directory: '/Users/goddard/ucsf/chimerax/src/core/dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl' make[1]: *** [app-install] Error 1 make: *** [install] Error 2 $ Log: UCSF ChimeraX version: 0.94.dev202004140341 (2020-04-14) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-3.8.24 OpenGL renderer: AMD Radeon Pro Vega 20 OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (3)
comment:1 by , 6 years ago
| Component: | Unassigned → Build System |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Error building core related to version number changing |
comment:2 by , 6 years ago
This looks like the bug where the ChimeraX-Core's setup.py and buildinfo.py files need to be regenerated after a git commit.
comment:3 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Fixed core to always regenerate the setup.py and buildinfo.py files since the .dev#### is embedded in the setup.py file and we're updating the dev number on every commit.
Note:
See TracTickets
for help on using tickets.
Here is complete build output in core that shows it made the wheel with one time stamp in the version
ChimeraX_Core-0.94.dev202004140341-cp37-cp37m-macosx_10_15_x86_64.whl
and then attempted to install a non-existent wheel with a newer time stamp
ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl
$ !ma
make install
../../../ChimeraX.app/Contents/bin/ChimeraX --nogui --safemode --exit --cmd "devel install . user false exit true "
0.00% done: Initializing core
50.00% done: Initializing bundles
Executing: devel install . user false exit true
running build
running build_py
copying src/shape.py -> build/lib/chimerax/shape
running bdist_wheel
installing to build/bdist.macosx-10.15-x86_64/wheel
running install
running install_lib
creating build/bdist.macosx-10.15-x86_64/wheel
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/init.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/resizemode.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/shape.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/boxpath.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
running install_egg_info
running egg_info
writing ChimeraX_Shape.egg-info/PKG-INFO
writing dependency_links to ChimeraX_Shape.egg-info/dependency_links.txt
writing requirements to ChimeraX_Shape.egg-info/requires.txt
writing top-level names to ChimeraX_Shape.egg-info/top_level.txt
reading manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
writing manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
Copying ChimeraX_Shape.egg-info to build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Shape-1.0-py3.7.egg-info
running install_scripts
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Shape-1.0.dist-info/WHEEL
creating 'dist/ChimeraX_Shape-1.0-py3-none-any.whl' and adding 'build/bdist.macosx-10.15-x86_64/wheel' to it
adding 'chimerax/shape/init.py'
adding 'chimerax/shape/boxpath.py'
adding 'chimerax/shape/resizemode.py'
adding 'chimerax/shape/shape.py'
adding 'ChimeraX_Shape-1.0.dist-info/METADATA'
adding 'ChimeraX_Shape-1.0.dist-info/WHEEL'
adding 'ChimeraX_Shape-1.0.dist-info/top_level.txt'
adding 'ChimeraX_Shape-1.0.dist-info/RECORD'
removing build/bdist.macosx-10.15-x86_64/wheel
Distribution is in ./dist/ChimeraX_Shape-1.0-py3-none-any.whl
Executing: toolshed install ./dist/ChimeraX_Shape-1.0-py3-none-any.whl userOnly false
Successfully installed ChimeraX-Shape-1.0
Installed ChimeraX-Shape (1.0)
$ cx
$ cx
$ pwd
/Users/goddard/ucsf/chimerax/src/bundles/shape
$ make clean
if [ -x ../../../ChimeraX.app/Contents/bin/ChimeraX -a -e bundle_info.xml ]; then \
0.00% done: Initializing core
50.00% done: Initializing bundles
Executing: devel clean . exit true
if [ -n "" ]; then \
$ ls
Makefile bundle_info.xml bundle_info.xml~ src/
$ rm *~
remove bundle_info.xml~? y
$ cd src
$ ls
init.py boxpath.py resizemode.py shape.py
init.py~ boxpath.py~ resizemode.py~ shape.py~
$ rm *~
remove init.py~? y
remove boxpath.py~? y
remove resizemode.py~? y
remove shape.py~? y
$ ls
init.py boxpath.py resizemode.py shape.py
$ cd ../..
$ git add shape
$ git pull
remote: Counting objects: 219, done.
remote: Compressing objects: 100% (61/61), done.
remote: Total 139 (delta 108), reused 100 (delta 78)
Receiving objects: 100% (139/139), 24.07 KiB | 127.00 KiB/s, done.
Resolving deltas: 100% (108/108), completed with 40 local objects.
From ssh://plato.cgl.ucsf.edu/usr/local/projects/chimerax/git/chimerax
Auto-merging src/bundles/Makefile
hint: Waiting for your editor to close the file...
Merge made by the 'recursive' strategy.
$ git push
Enumerating objects: 64, done.
Counting objects: 100% (56/56), done.
Delta compression using up to 16 threads
Compressing objects: 100% (36/36), done.
Writing objects: 100% (36/36), 15.69 KiB | 1.57 MiB/s, done.
Total 36 (delta 26), reused 0 (delta 0)
To ssh://plato.cgl.ucsf.edu/usr/local/projects/chimerax/git/chimerax.git
$ pwd
/Users/goddard/ucsf/chimerax/src/bundles
$ cd shape/
$ make install
../../../ChimeraX.app/Contents/bin/ChimeraX --nogui --safemode --exit --cmd "devel install . user false exit true "
0.00% done: Initializing core
50.00% done: Initializing bundles
Executing: devel install . user false exit true
running build
running build_py
creating build
creating build/lib
creating build/lib/chimerax
creating build/lib/chimerax/shape
copying src/init.py -> build/lib/chimerax/shape
copying src/resizemode.py -> build/lib/chimerax/shape
copying src/shape.py -> build/lib/chimerax/shape
copying src/boxpath.py -> build/lib/chimerax/shape
running bdist_wheel
installing to build/bdist.macosx-10.15-x86_64/wheel
running install
running install_lib
creating build/bdist.macosx-10.15-x86_64
creating build/bdist.macosx-10.15-x86_64/wheel
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/init.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/resizemode.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/shape.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/boxpath.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
running install_egg_info
running egg_info
creating ChimeraX_Shape.egg-info
writing ChimeraX_Shape.egg-info/PKG-INFO
writing dependency_links to ChimeraX_Shape.egg-info/dependency_links.txt
writing requirements to ChimeraX_Shape.egg-info/requires.txt
writing top-level names to ChimeraX_Shape.egg-info/top_level.txt
writing manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
reading manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
writing manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
Copying ChimeraX_Shape.egg-info to build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Shape-1.0-py3.7.egg-info
running install_scripts
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Shape-1.0.dist-info/WHEEL
creating 'dist/ChimeraX_Shape-1.0-py3-none-any.whl' and adding 'build/bdist.macosx-10.15-x86_64/wheel' to it
adding 'chimerax/shape/init.py'
adding 'chimerax/shape/boxpath.py'
adding 'chimerax/shape/resizemode.py'
adding 'chimerax/shape/shape.py'
adding 'ChimeraX_Shape-1.0.dist-info/METADATA'
adding 'ChimeraX_Shape-1.0.dist-info/WHEEL'
adding 'ChimeraX_Shape-1.0.dist-info/top_level.txt'
adding 'ChimeraX_Shape-1.0.dist-info/RECORD'
removing build/bdist.macosx-10.15-x86_64/wheel
Distribution is in ./dist/ChimeraX_Shape-1.0-py3-none-any.whl
Executing: toolshed install ./dist/ChimeraX_Shape-1.0-py3-none-any.whl userOnly false
Successfully installed ChimeraX-Shape-1.0
Installed ChimeraX-Shape (1.0)
$ copying src/shape.py -> build/lib/chimerax/shape
bash: build/lib/chimerax/shape: Is a directory
$ cx
$ git pull
remote: Counting objects: 24, done.
remote: Compressing objects: 100% (13/13), done.
remote: Total 13 (delta 11), reused 0 (delta 0)
Unpacking objects: 100% (13/13), done.
From ssh://plato.cgl.ucsf.edu/usr/local/projects/chimerax/git/chimerax
hint: Waiting for your editor to close the file...
Merge made by the 'recursive' strategy.
$ git push
Enumerating objects: 21, done.
Counting objects: 100% (16/16), done.
Delta compression using up to 16 threads
Compressing objects: 100% (9/9), done.
Writing objects: 100% (9/9), 870 bytes | 87.00 KiB/s, done.
Total 9 (delta 7), reused 0 (delta 0)
To ssh://plato.cgl.ucsf.edu/usr/local/projects/chimerax/git/chimerax.git
$ git status
On branch develop
Your branch is up to date with 'origin/develop'.
Untracked files:
nothing added to commit but untracked files present (use "git add" to track)
$ pwd
/Users/goddard/ucsf/chimerax/src/bundles/shape
$ !ma
make install
../../../ChimeraX.app/Contents/bin/ChimeraX --nogui --safemode --exit --cmd "devel install . user false exit true "
0.00% done: Initializing core
50.00% done: Initializing bundles
Executing: devel install . user false exit true
running build
running build_py
copying src/shape.py -> build/lib/chimerax/shape
running bdist_wheel
installing to build/bdist.macosx-10.15-x86_64/wheel
running install
running install_lib
creating build/bdist.macosx-10.15-x86_64/wheel
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/init.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/resizemode.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/shape.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
copying build/lib/chimerax/shape/boxpath.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/shape
running install_egg_info
running egg_info
writing ChimeraX_Shape.egg-info/PKG-INFO
writing dependency_links to ChimeraX_Shape.egg-info/dependency_links.txt
writing requirements to ChimeraX_Shape.egg-info/requires.txt
writing top-level names to ChimeraX_Shape.egg-info/top_level.txt
reading manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
writing manifest file 'ChimeraX_Shape.egg-info/SOURCES.txt'
Copying ChimeraX_Shape.egg-info to build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Shape-1.0-py3.7.egg-info
running install_scripts
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Shape-1.0.dist-info/WHEEL
creating 'dist/ChimeraX_Shape-1.0-py3-none-any.whl' and adding 'build/bdist.macosx-10.15-x86_64/wheel' to it
adding 'chimerax/shape/init.py'
adding 'chimerax/shape/boxpath.py'
adding 'chimerax/shape/resizemode.py'
adding 'chimerax/shape/shape.py'
adding 'ChimeraX_Shape-1.0.dist-info/METADATA'
adding 'ChimeraX_Shape-1.0.dist-info/WHEEL'
adding 'ChimeraX_Shape-1.0.dist-info/top_level.txt'
adding 'ChimeraX_Shape-1.0.dist-info/RECORD'
removing build/bdist.macosx-10.15-x86_64/wheel
Distribution is in ./dist/ChimeraX_Shape-1.0-py3-none-any.whl
Executing: toolshed install ./dist/ChimeraX_Shape-1.0-py3-none-any.whl userOnly false
Successfully installed ChimeraX-Shape-1.0
Installed ChimeraX-Shape (1.0)
$ cx
$ pwd
/Users/goddard/ucsf/chimerax/src/bundles/shape
$ pushd ../../core
~/ucsf/chimerax/src/core ~/ucsf/chimerax/src/bundles/shape
$ make install
if [ ! -d "/Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core" ]; then mkdir -p /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core; fi
rm -f buildinfo.py
/Users/goddard/ucsf/chimerax/build/bin/python3 -t -m py_compile 'buildinfo.py'
/Users/goddard/ucsf/chimerax/build/bin/python3 -t -m py_compile 'models.py'
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C appdirs_cpp install
rsync -rltWv --executability libappdirs.dylib /Users/goddard/ucsf/chimerax/build/lib
building file list ... done
sent 51 bytes received 20 bytes 142.00 bytes/sec
total size is 14500 speedup is 204.23
rsync -rltWv --executability imex.h AppDirs.h imex.h /Users/goddard/ucsf/chimerax/build/include/appdirs/
building file list ... done
sent 76 bytes received 20 bytes 192.00 bytes/sec
total size is 3281 speedup is 34.18
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/include" ]; then \
building file list ... done
sent 76 bytes received 20 bytes 192.00 bytes/sec
total size is 3281 speedup is 34.18
#if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib" ]; then rsync -rltWv --executability libappdirs.dylib /Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib; fi
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C _appdirs install
rsync -rltWv --executability _appdirs.so /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core
building file list ... done
sent 46 bytes received 20 bytes 132.00 bytes/sec
total size is 14072 speedup is 213.21
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C chutil_cpp install
rsync -rltWv --executability libchutil.a /Users/goddard/ucsf/chimerax/build/lib
building file list ... done
sent 46 bytes received 20 bytes 132.00 bytes/sec
total size is 22864 speedup is 346.42
rsync -rltWv --executability CString.h IOFile.h VectorMap.h cmp_nocase.h /Users/goddard/ucsf/chimerax/build/include/chutil/
building file list ... done
sent 93 bytes received 20 bytes 226.00 bytes/sec
total size is 12107 speedup is 107.14
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/include" ]; then \
building file list ... done
sent 93 bytes received 20 bytes 226.00 bytes/sec
total size is 12107 speedup is 107.14
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C commands install
/Users/goddard/ucsf/chimerax/build/bin/python3 -t -m py_compile 'devel.py'
/Users/goddard/ucsf/chimerax/build/bin/python3 -t -m py_compile 'run.py'
/Users/goddard/ucsf/chimerax/build/bin/python3 -t -m py_compile 'toolshed.py'
if [ ! -d "/Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/commands" ]; then mkdir /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/commands; fi
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents" ]; then mkdir -p /Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib/python3.7/site-packages/chimerax/core/commands; fi
rsync -rltWv --executability init.py _atomspec.py atomspec.py cli.py colorarg.py devel.py linux.py logging.py motion.py open.py run.py runscript.py save.py toolshed.py _atomspec.py /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/commands
building file list ... done
devel.py
run.py
toolshed.py
sent 31534 bytes received 86 bytes 63240.00 bytes/sec
total size is 295473 speedup is 9.34
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C ioutil_cpp install
rsync -rltWv --executability libioutil.a /Users/goddard/ucsf/chimerax/build/lib
building file list ... done
sent 46 bytes received 20 bytes 132.00 bytes/sec
total size is 11696 speedup is 177.21
rsync -rltWv --executability GetOpt.h direntry.h pstream.h tokenize.h win32_dirent.h /Users/goddard/ucsf/chimerax/build/include/ioutil/
building file list ... done
sent 110 bytes received 20 bytes 260.00 bytes/sec
total size is 13711 speedup is 105.47
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/include" ]; then \
building file list ... done
sent 110 bytes received 20 bytes 260.00 bytes/sec
total size is 13711 speedup is 105.47
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C logger_cpp install
rsync -rltWv --executability liblogger.dylib /Users/goddard/ucsf/chimerax/build/lib
building file list ... done
sent 50 bytes received 20 bytes 140.00 bytes/sec
total size is 37148 speedup is 530.69
rsync -rltWv --executability imex.h imex.h logger.h /Users/goddard/ucsf/chimerax/build/include/logger/
building file list ... done
sent 66 bytes received 20 bytes 172.00 bytes/sec
total size is 3674 speedup is 42.72
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/include" ]; then \
building file list ... done
sent 66 bytes received 20 bytes 172.00 bytes/sec
total size is 3674 speedup is 42.72
#if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib" ]; then rsync -rltWv --executability liblogger.dylib /Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib; fi
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C pysupport_cpp install
rsync -rltWv --executability convert.h /Users/goddard/ucsf/chimerax/build/include/pysupport/
building file list ... done
sent 44 bytes received 20 bytes 128.00 bytes/sec
total size is 10870 speedup is 169.84
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/include" ]; then \
building file list ... done
sent 44 bytes received 20 bytes 128.00 bytes/sec
total size is 10870 speedup is 169.84
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C toolshed install
/Users/goddard/ucsf/chimerax/build/bin/python3 -t -m py_compile 'init.py'
if [ ! -d "/Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/toolshed" ]; then mkdir -p /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/toolshed; fi
#if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents" ]; then mkdir -p /Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib/python3.7/site-packages/chimerax/core/toolshed; fi
rsync -rltWv --executability init.py available.py info.py installed.py /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/toolshed
building file list ... done
init.py
sent 68314 bytes received 42 bytes 136712.00 bytes/sec
total size is 137524 speedup is 2.01
#if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib/python3.7/site-packages/chimerax/core/toolshed" ]; then rsync -rltWv --executability init.py available.py info.py installed.py /Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/lib/python3.7/site-packages/chimerax/core/toolshed; fi
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C mac_util_cpp install
rsync -rltWv --executability _mac_util.so /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core
building file list ... done
sent 47 bytes received 20 bytes 134.00 bytes/sec
total size is 9724 speedup is 145.13
rsync -rltWv --executability init.py _serial_python.py _xdg.py buildinfo.py colors.py configfile.py core_settings.py core_triggers.py data_events.py errors.py fetch.py filehistory.py generic3d.py history.py image.py io.py logger.py models.py nogui.py objects.py order_dag.py orderedset.py safesave.py scripting.py selection.py serialize.py session.py settings.py startup.py state.py tasks.py threadq.py tools.py triggerset.py undo.py updateloop.py utils.py x3d.py buildinfo.py colorbrewer.json /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core
building file list ... done
buildinfo.py
models.py
sent 30459 bytes received 64 bytes 61046.00 bytes/sec
total size is 481672 speedup is 15.78
if [ -d "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents" ]; then \
rm -f dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl
/Users/goddard/ucsf/chimerax/build/bin/python3.7 setup.py --no-user-cfg bdist_wheel --plat-name macosx_10_15_x86_64
running bdist_wheel
running build
running build_py
copying /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/models.py -> build/lib.macosx-10.15-x86_64-3.7/chimerax/core
copying /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/buildinfo.py -> build/lib.macosx-10.15-x86_64-3.7/chimerax/core
copying /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/commands/run.py -> build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands
copying /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/commands/toolshed.py -> build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands
copying /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/commands/devel.py -> build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands
copying /Users/goddard/ucsf/chimerax/build/lib/python3.7/site-packages/chimerax/core/toolshed/init.py -> build/lib.macosx-10.15-x86_64-3.7/chimerax/core/toolshed
running build_ext
installing to build/bdist.macosx-10.15-x86_64/wheel
running install
running install_lib
creating build/bdist.macosx-10.15-x86_64/wheel
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/_appdirs.so -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/fetch.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/serialize.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/_serialize.cpython-37m-darwin.so -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/toolshed
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/toolshed/init.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/toolshed
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/toolshed/available.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/toolshed
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/toolshed/info.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/toolshed
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/toolshed/installed.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/toolshed
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/startup.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/_xdg.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/generic3d.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/tasks.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/models.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/x3d.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/threadq.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/tools.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/io.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/scripting.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/configfile.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/session.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/core_triggers.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/init.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/orderedset.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/logger.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/_serial_python.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/utils.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/colorbrewer.json -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/_mac_util.so -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/order_dag.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/undo.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/settings.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/data_events.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
creating build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/save.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/logging.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/run.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/toolshed.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/colorarg.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/runscript.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/init.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/motion.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/atomspec.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/cli.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/open.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/_atomspec.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/devel.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/commands/linux.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core/commands
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/errors.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/selection.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/updateloop.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/buildinfo.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/filehistory.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/safesave.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/nogui.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/objects.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/image.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/state.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/core_settings.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/triggerset.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/history.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
copying build/lib.macosx-10.15-x86_64-3.7/chimerax/core/colors.py -> build/bdist.macosx-10.15-x86_64/wheel/chimerax/core
running install_data
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data/lib
copying /Users/goddard/ucsf/chimerax/build/lib/libappdirs.dylib -> build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data/lib
copying /Users/goddard/ucsf/chimerax/build/lib/liblogger.dylib -> build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data/lib
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data/share
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data/share/idatm
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.data/data/share/idatm/templates
running install_egg_info
running egg_info
creating ChimeraX_Core.egg-info
writing ChimeraX_Core.egg-info/PKG-INFO
writing dependency_links to ChimeraX_Core.egg-info/dependency_links.txt
writing top-level names to ChimeraX_Core.egg-info/top_level.txt
writing manifest file 'ChimeraX_Core.egg-info/SOURCES.txt'
reading manifest file 'ChimeraX_Core.egg-info/SOURCES.txt'
writing manifest file 'ChimeraX_Core.egg-info/SOURCES.txt'
Copying ChimeraX_Core.egg-info to build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341-py3.7.egg-info
running install_scripts
creating build/bdist.macosx-10.15-x86_64/wheel/ChimeraX_Core-0.94.dev202004140341.dist-info/WHEEL
creating 'dist/ChimeraX_Core-0.94.dev202004140341-cp37-cp37m-macosx_10_15_x86_64.whl' and adding 'build/bdist.macosx-10.15-x86_64/wheel' to it
adding 'ChimeraX_Core-0.94.dev202004140341.data/data/lib/libappdirs.dylib'
adding 'ChimeraX_Core-0.94.dev202004140341.data/data/lib/liblogger.dylib'
adding 'chimerax/core/init.py'
adding 'chimerax/core/_appdirs.so'
adding 'chimerax/core/_mac_util.so'
adding 'chimerax/core/_serial_python.py'
adding 'chimerax/core/_serialize.cpython-37m-darwin.so'
adding 'chimerax/core/_xdg.py'
adding 'chimerax/core/buildinfo.py'
adding 'chimerax/core/colorbrewer.json'
adding 'chimerax/core/colors.py'
adding 'chimerax/core/configfile.py'
adding 'chimerax/core/core_settings.py'
adding 'chimerax/core/core_triggers.py'
adding 'chimerax/core/data_events.py'
adding 'chimerax/core/errors.py'
adding 'chimerax/core/fetch.py'
adding 'chimerax/core/filehistory.py'
adding 'chimerax/core/generic3d.py'
adding 'chimerax/core/history.py'
adding 'chimerax/core/image.py'
adding 'chimerax/core/io.py'
adding 'chimerax/core/logger.py'
adding 'chimerax/core/models.py'
adding 'chimerax/core/nogui.py'
adding 'chimerax/core/objects.py'
adding 'chimerax/core/order_dag.py'
adding 'chimerax/core/orderedset.py'
adding 'chimerax/core/safesave.py'
adding 'chimerax/core/scripting.py'
adding 'chimerax/core/selection.py'
adding 'chimerax/core/serialize.py'
adding 'chimerax/core/session.py'
adding 'chimerax/core/settings.py'
adding 'chimerax/core/startup.py'
adding 'chimerax/core/state.py'
adding 'chimerax/core/tasks.py'
adding 'chimerax/core/threadq.py'
adding 'chimerax/core/tools.py'
adding 'chimerax/core/triggerset.py'
adding 'chimerax/core/undo.py'
adding 'chimerax/core/updateloop.py'
adding 'chimerax/core/utils.py'
adding 'chimerax/core/x3d.py'
adding 'chimerax/core/commands/init.py'
adding 'chimerax/core/commands/_atomspec.py'
adding 'chimerax/core/commands/atomspec.py'
adding 'chimerax/core/commands/cli.py'
adding 'chimerax/core/commands/colorarg.py'
adding 'chimerax/core/commands/devel.py'
adding 'chimerax/core/commands/linux.py'
adding 'chimerax/core/commands/logging.py'
adding 'chimerax/core/commands/motion.py'
adding 'chimerax/core/commands/open.py'
adding 'chimerax/core/commands/run.py'
adding 'chimerax/core/commands/runscript.py'
adding 'chimerax/core/commands/save.py'
adding 'chimerax/core/commands/toolshed.py'
adding 'chimerax/core/toolshed/init.py'
adding 'chimerax/core/toolshed/available.py'
adding 'chimerax/core/toolshed/info.py'
adding 'chimerax/core/toolshed/installed.py'
adding 'ChimeraX_Core-0.94.dev202004140341.dist-info/METADATA'
adding 'ChimeraX_Core-0.94.dev202004140341.dist-info/WHEEL'
adding 'ChimeraX_Core-0.94.dev202004140341.dist-info/copyright.txt'
adding 'ChimeraX_Core-0.94.dev202004140341.dist-info/top_level.txt'
adding 'ChimeraX_Core-0.94.dev202004140341.dist-info/RECORD'
removing build/bdist.macosx-10.15-x86_64/wheel
rm -rf ChimeraX_Core.egg-info
/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/bin/python3.7 -m pip install -U dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl
WARNING: Requirement 'dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl' looks like a filename, but the file does not exist
Processing ./dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl
ERROR: Could not install packages due to an EnvironmentError: [Errno 2] No such file or directory: '/Users/goddard/ucsf/chimerax/src/core/dist/ChimeraX_Core-0.94.dev202004160103-cp37-cp37m-macosx_10_15_x86_64.whl'
make[1]: * [app-install] Error 1
make: * [install] Error 2
$