![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#3039 closed defect (can't reproduce)
crash in glDeleteBuffers
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.4.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-11-26)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [4203]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [4203]
User ID: 501
Date/Time: 2020-04-11 12:13:55.300 +0200
OS Version: Mac OS X 10.15.4 (19E287)
Report Version: 12
Anonymous UUID: A5424DD3-3A14-AB34-93E2-5E203EBD0B2A
Time Awake Since Boot: 80000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00008013
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6fdf333a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6feb3e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6fd0a93e raise + 26
3 libsystem_platform.dylib 0x00007fff6fea85fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff6fd7a808 abort + 120
6 libGPUSupportMercury.dylib 0x00007fff570690a5 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff5706018f gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelHD4000GraphicsGLDriver 0x00007fff2bbb6d6b gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff570616a1 gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelHD4000GraphicsGLDriver 0x00007fff2b7894c8 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelHD4000GraphicsGLDriver 0x00007fff2b7892f6 intelSubmitCommands + 187
12 GLEngine 0x00007fff40a4b8ef gleFreeOrphan + 116
13 GLEngine 0x00007fff40a4b5a9 gleCleanupOrphans + 39
14 GLEngine 0x00007fff40a4b4bd gleOrphanBufferObject + 441
15 GLEngine 0x00007fff409afac4 glDeleteBuffers_Exec + 2133
16 _ctypes.cpython-37m-darwin.so 0x0000000107acee9f ffi_call_unix64 + 79
17 _ctypes.cpython-37m-darwin.so 0x0000000107acf6fa ffi_call + 858
18 _ctypes.cpython-37m-darwin.so 0x0000000107aca7f3 _ctypes_callproc + 787
19 _ctypes.cpython-37m-darwin.so 0x0000000107ac4553 PyCFuncPtr_call + 1043
20 org.python.python 0x00000001040824f8 PyObject_Call + 136
21 org.python.python 0x00000001040d273e slot_tp_call + 190
22 wrapper.cpython-37m-darwin.so 0x000000010c3dea61 __Pyx_PyObject_Call + 97
23 wrapper.cpython-37m-darwin.so 0x000000010c3ec52c __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 972
24 latebind.cpython-37m-darwin.so 0x000000010c43c731 __Pyx_PyObject_Call + 97
25 latebind.cpython-37m-darwin.so 0x000000010c43c2fb __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_7__call__ + 363
26 org.python.python 0x00000001040821ff _PyObject_FastCallKeywords + 559
27 org.python.python 0x000000010414c02a call_function + 714
28 org.python.python 0x000000010414467a _PyEval_EvalFrameDefault + 5562
29 org.python.python 0x0000000104082893 function_code_fastcall + 195
30 org.python.python 0x000000010414c031 call_function + 721
31 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
32 org.python.python 0x0000000104082893 function_code_fastcall + 195
33 org.python.python 0x000000010414c031 call_function + 721
34 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
35 org.python.python 0x0000000104082893 function_code_fastcall + 195
36 org.python.python 0x000000010414c031 call_function + 721
37 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
38 org.python.python 0x0000000104082893 function_code_fastcall + 195
39 org.python.python 0x000000010414c031 call_function + 721
40 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
41 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
42 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
43 org.python.python 0x000000010414c031 call_function + 721
44 org.python.python 0x00000001041447a9 _PyEval_EvalFrameDefault + 5865
45 org.python.python 0x0000000104082893 function_code_fastcall + 195
46 org.python.python 0x000000010414c031 call_function + 721
47 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
48 org.python.python 0x0000000104082893 function_code_fastcall + 195
49 org.python.python 0x000000010414c031 call_function + 721
50 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
51 org.python.python 0x0000000104082893 function_code_fastcall + 195
52 org.python.python 0x000000010414c031 call_function + 721
53 org.python.python 0x000000010414470b _PyEval_EvalFrameDefault + 5707
54 org.python.python 0x0000000104082893 function_code_fastcall + 195
55 org.python.python 0x000000010414c031 call_function + 721
56 org.python.python 0x000000010414470b _PyEval_EvalFrameDefault + 5707
57 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
58 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
59 org.python.python 0x000000010414c031 call_function + 721
60 org.python.python 0x00000001041447a9 _PyEval_EvalFrameDefault + 5865
61 org.python.python 0x0000000104082893 function_code_fastcall + 195
62 org.python.python 0x000000010414c031 call_function + 721
63 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
64 org.python.python 0x0000000104082893 function_code_fastcall + 195
65 org.python.python 0x000000010414c031 call_function + 721
66 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
67 org.python.python 0x0000000104082893 function_code_fastcall + 195
68 org.python.python 0x000000010414c031 call_function + 721
69 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
70 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
71 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
72 org.python.python 0x000000010414c031 call_function + 721
73 org.python.python 0x00000001041447a9 _PyEval_EvalFrameDefault + 5865
74 org.python.python 0x0000000104082893 function_code_fastcall + 195
75 org.python.python 0x000000010414c031 call_function + 721
76 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
77 org.python.python 0x0000000104082893 function_code_fastcall + 195
78 org.python.python 0x00000001040833b6 _PyObject_Call_Prepend + 150
79 org.python.python 0x00000001040824f8 PyObject_Call + 136
80 QtCore.so 0x000000010ff70f17 PyQtSlot::call(_object*, _object*) const + 39
81 QtCore.so 0x000000010ff70e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
82 QtCore.so 0x000000010ff71925 PyQtSlotProxy::unislot(void**) + 85
83 QtCore.so 0x000000010ff7189a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
84 QtCore 0x000000010dede5cd QMetaObject::activate(QObject*, int, int, void**) + 1773
85 QtCore 0x000000010dee6682 QTimer::timerEvent(QTimerEvent*) + 98
86 QtCore.so 0x000000010fe67028 sipQTimer::timerEvent(QTimerEvent*) + 120
87 QtCore 0x000000010ded6f46 QObject::event(QEvent*) + 102
88 QtCore.so 0x000000010fe66e9b sipQTimer::event(QEvent*) + 187
89 QtWidgets 0x000000010d1e376d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
90 QtWidgets 0x000000010d1e4b72 QApplication::notify(QObject*, QEvent*) + 594
91 QtWidgets.so 0x000000010cdb23ca sipQApplication::notify(QObject*, QEvent*) + 234
92 QtCore 0x000000010dead7c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
93 QtCore 0x000000010df06dcf QTimerInfoList::activateTimers() + 991
94 libqcocoa.dylib 0x0000000117bdb4a2 0x117ba7000 + 214178
95 com.apple.CoreFoundation 0x00007fff35e4ba54 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
96 com.apple.CoreFoundation 0x00007fff35e4b9f3 __CFRunLoopDoSource0 + 103
97 com.apple.CoreFoundation 0x00007fff35e4b80d __CFRunLoopDoSources0 + 209
98 com.apple.CoreFoundation 0x00007fff35e4a529 __CFRunLoopRun + 937
99 com.apple.CoreFoundation 0x00007fff35e49b23 CFRunLoopRunSpecific + 466
100 com.apple.HIToolbox 0x00007fff34a6babd RunCurrentEventLoopInMode + 292
101 com.apple.HIToolbox 0x00007fff34a6b7d5 ReceiveNextEventCommon + 584
102 com.apple.HIToolbox 0x00007fff34a6b579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
103 com.apple.AppKit 0x00007fff330b6c99 _DPSNextEvent + 883
104 com.apple.AppKit 0x00007fff330b54e0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
105 com.apple.AppKit 0x00007fff330a71ee -[NSApplication run] + 658
106 libqcocoa.dylib 0x0000000117bdc253 0x117ba7000 + 217683
107 QtCore 0x000000010dea8ddf QEventLoop::exec(QFlags) + 431
108 QtCore 0x000000010deaddd2 QCoreApplication::exec() + 130
109 QtWidgets.so 0x000000010cea17d2 meth_QApplication_exec_(_object*, _object*) + 82
110 org.python.python 0x0000000104082edb _PyMethodDef_RawFastCallKeywords + 251
111 org.python.python 0x00000001040823dc _PyCFunction_FastCallKeywords + 44
112 org.python.python 0x000000010414bfc9 call_function + 617
113 org.python.python 0x000000010414467a _PyEval_EvalFrameDefault + 5562
114 org.python.python 0x0000000104082893 function_code_fastcall + 195
115 org.python.python 0x000000010414c031 call_function + 721
116 org.python.python 0x000000010414467a _PyEval_EvalFrameDefault + 5562
117 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
118 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
119 org.python.python 0x000000010414c031 call_function + 721
120 org.python.python 0x000000010414470b _PyEval_EvalFrameDefault + 5707
121 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
122 org.python.python 0x0000000104143020 PyEval_EvalCode + 48
123 org.python.python 0x0000000104140683 builtin_exec + 563
124 org.python.python 0x000000010408308e _PyMethodDef_RawFastCallKeywords + 686
125 org.python.python 0x00000001040823dc _PyCFunction_FastCallKeywords + 44
126 org.python.python 0x000000010414bfc9 call_function + 617
127 org.python.python 0x000000010414470b _PyEval_EvalFrameDefault + 5707
128 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
129 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
130 org.python.python 0x000000010414c031 call_function + 721
131 org.python.python 0x000000010414470b _PyEval_EvalFrameDefault + 5707
132 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
133 org.python.python 0x0000000104081e72 _PyFunction_FastCallDict + 450
134 org.python.python 0x00000001041a10e3 pymain_run_module + 147
135 org.python.python 0x00000001041a01a1 pymain_main + 5041
136 org.python.python 0x000000010419ede3 Py_Main + 51
137 edu.ucsf.cgl.ChimeraX 0x0000000104057e01 main + 593
138 libdyld.dylib 0x00007fff6fcabcc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6fdef882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6feb4425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x00000001080dec3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff35e4bbf7 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff35e4a6b1 __CFRunLoopRun + 1329
4 com.apple.CoreFoundation 0x00007fff35e49b23 CFRunLoopRunSpecific + 466
5 com.apple.AppKit 0x00007fff332585b4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128292ef 0x11067e000 + 35304175
4 QtWebEngineCore 0x00000001127dd11d 0x11067e000 + 34992413
5 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
6 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff6fdf1766 kevent + 10
1 QtWebEngineCore 0x0000000112aeaa59 0x11067e000 + 38193753
2 QtWebEngineCore 0x0000000112ae7d6d 0x11067e000 + 38182253
3 QtWebEngineCore 0x000000011289ed8c 0x11067e000 + 35786124
4 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
5 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
6 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
7 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff6fdf1766 kevent + 10
1 QtWebEngineCore 0x0000000112aeaa59 0x11067e000 + 38193753
2 QtWebEngineCore 0x0000000112ae7d6d 0x11067e000 + 38182253
3 QtWebEngineCore 0x000000011289ed74 0x11067e000 + 35786100
4 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
5 QtWebEngineCore 0x0000000112847b34 0x11067e000 + 35429172
6 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 6:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128294e1 0x11067e000 + 35304673
4 QtWebEngineCore 0x0000000112840de8 0x11067e000 + 35401192
5 QtWebEngineCore 0x000000011284171b 0x11067e000 + 35403547
6 QtWebEngineCore 0x0000000112841384 0x11067e000 + 35402628
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128294e1 0x11067e000 + 35304673
4 QtWebEngineCore 0x0000000112840de8 0x11067e000 + 35401192
5 QtWebEngineCore 0x000000011284171b 0x11067e000 + 35403547
6 QtWebEngineCore 0x0000000112841384 0x11067e000 + 35402628
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 8:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128294e1 0x11067e000 + 35304673
4 QtWebEngineCore 0x0000000112840de8 0x11067e000 + 35401192
5 QtWebEngineCore 0x000000011284171b 0x11067e000 + 35403547
6 QtWebEngineCore 0x00000001128412f4 0x11067e000 + 35402484
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 9:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128294e1 0x11067e000 + 35304673
4 QtWebEngineCore 0x0000000112840de8 0x11067e000 + 35401192
5 QtWebEngineCore 0x000000011284171b 0x11067e000 + 35403547
6 QtWebEngineCore 0x00000001128412f4 0x11067e000 + 35402484
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 10:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6fdf1766 kevent + 10
1 QtWebEngineCore 0x0000000112aeaa59 0x11067e000 + 38193753
2 QtWebEngineCore 0x0000000112ae7d6d 0x11067e000 + 38182253
3 QtWebEngineCore 0x000000011289ed74 0x11067e000 + 35786100
4 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
5 QtWebEngineCore 0x000000011216c5d4 0x11067e000 + 28239316
6 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 11:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128292ef 0x11067e000 + 35304175
4 QtWebEngineCore 0x0000000112840dda 0x11067e000 + 35401178
5 QtWebEngineCore 0x000000011284147f 0x11067e000 + 35402879
6 QtWebEngineCore 0x0000000112841324 0x11067e000 + 35402532
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 12:: CompositorTileWorker1/74755
0 libsystem_kernel.dylib 0x00007fff6fdef882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6feb4425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000112897058 0x11067e000 + 35754072
3 QtWebEngineCore 0x000000011381f658 0x11067e000 + 52041304
4 QtWebEngineCore 0x0000000112857754 0x11067e000 + 35493716
5 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
6 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128292ef 0x11067e000 + 35304175
4 QtWebEngineCore 0x00000001127dd11d 0x11067e000 + 34992413
5 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
6 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128292ef 0x11067e000 + 35304175
4 QtWebEngineCore 0x00000001127dd11d 0x11067e000 + 34992413
5 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
6 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 15:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001127dd112 0x11067e000 + 34992402
4 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
5 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
6 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
7 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 16:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6fdf1766 kevent + 10
1 QtWebEngineCore 0x0000000112aeaa59 0x11067e000 + 38193753
2 QtWebEngineCore 0x0000000112ae7d6d 0x11067e000 + 38182253
3 QtWebEngineCore 0x000000011289ed8c 0x11067e000 + 35786124
4 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
5 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
6 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
7 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 17:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128292ef 0x11067e000 + 35304175
4 QtWebEngineCore 0x0000000112840dda 0x11067e000 + 35401178
5 QtWebEngineCore 0x000000011284171b 0x11067e000 + 35403547
6 QtWebEngineCore 0x00000001128413e4 0x11067e000 + 35402724
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 18:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff6fdef882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6feb4425 _pthread_cond_wait + 698
2 QtCore 0x000000010dceec9b 0x10dcc4000 + 175259
3 QtCore 0x000000010dceebfc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000010d40e7a2 0x10d1d3000 + 2340770
5 QtCore 0x000000010dce64a3 0x10dcc4000 + 140451
6 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6fdecdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6fded170 mach_msg + 60
2 QtWebEngineCore 0x00000001128293ed 0x11067e000 + 35304429
3 QtWebEngineCore 0x00000001128292ef 0x11067e000 + 35304175
4 QtWebEngineCore 0x00000001127dd11d 0x11067e000 + 34992413
5 QtWebEngineCore 0x0000000112806145 0x11067e000 + 35160389
6 QtWebEngineCore 0x0000000112858a7c 0x11067e000 + 35498620
7 QtWebEngineCore 0x00000001128987c7 0x11067e000 + 35760071
8 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 20:
0 libsystem_pthread.dylib 0x00007fff6feafb68 start_wqthread + 0
Thread 21:
0 libsystem_pthread.dylib 0x00007fff6feafb68 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6feafb68 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6feafb68 start_wqthread + 0
Thread 24:
0 libsystem_kernel.dylib 0x00007fff6fdef882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6feb4425 _pthread_cond_wait + 698
2 org.python.python 0x000000010418ca96 PyThread_acquire_lock_timed + 390
3 org.python.python 0x00000001041d40f6 acquire_timed + 134
4 org.python.python 0x00000001041d3e7c lock_PyThread_acquire_lock + 44
5 org.python.python 0x00000001040830ca _PyMethodDef_RawFastCallKeywords + 746
6 org.python.python 0x0000000104088b82 _PyMethodDescr_FastCallKeywords + 82
7 org.python.python 0x000000010414c05b call_function + 763
8 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
9 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
10 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
11 org.python.python 0x000000010414c031 call_function + 721
12 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
13 org.python.python 0x000000010414cc84 _PyEval_EvalCodeWithName + 2788
14 org.python.python 0x0000000104082396 _PyFunction_FastCallKeywords + 230
15 org.python.python 0x000000010414c031 call_function + 721
16 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
17 org.python.python 0x0000000104082893 function_code_fastcall + 195
18 org.python.python 0x000000010414c031 call_function + 721
19 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
20 org.python.python 0x0000000104082893 function_code_fastcall + 195
21 org.python.python 0x000000010414c031 call_function + 721
22 org.python.python 0x0000000104144660 _PyEval_EvalFrameDefault + 5536
23 org.python.python 0x0000000104082893 function_code_fastcall + 195
24 org.python.python 0x00000001040833b6 _PyObject_Call_Prepend + 150
25 org.python.python 0x00000001040824f8 PyObject_Call + 136
26 org.python.python 0x00000001041d49d7 t_bootstrap + 71
27 org.python.python 0x000000010418c6d9 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff6feb4109 _pthread_start + 148
29 libsystem_pthread.dylib 0x00007fff6feafb8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000107d6ddc0 rcx: 0x00000001044c9a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00000001044c9a80 rsp: 0x00000001044c9a58
r8: 0x00000001044c9f48 r9: 0x56f06b0e10a992fa r10: 0x0000000107d6ddc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x000000011c8382b0 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff6fdf333a rfl: 0x0000000000000246 cr2: 0x0000000107d40018
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6fa9f000 - 0x7fff6faa6fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6faa7000 - 0x7fff6fab0ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6fab1000 - 0x7fff6fb43fe3 libcorecrypto.dylib (866.100.30) /usr/lib/system/libcorecrypto.dylib
0x7fff6fc50000 - 0x7fff6fc90ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6fc91000 - 0x7fff6fcc7fff libdyld.dylib (750.5) /usr/lib/system/libdyld.dylib
0x7fff6fcc8000 - 0x7fff6fcc8ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6fcc9000 - 0x7fff6fcd5ff3 libkxld.dylib (6153.101.6) /usr/lib/system/libkxld.dylib
0x7fff6fcd6000 - 0x7fff6fcd6ff7 liblaunch.dylib (1738.100.39) /usr/lib/system/liblaunch.dylib
0x7fff6fcd7000 - 0x7fff6fcdcff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6fcdd000 - 0x7fff6fcdfff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6fce0000 - 0x7fff6fce1ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6fce2000 - 0x7fff6fcf9ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6fcfa000 - 0x7fff6fcfaff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6fcfb000 - 0x7fff6fd82fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6fd83000 - 0x7fff6fd86ffb libsystem_configuration.dylib (1061.101.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff6fd87000 - 0x7fff6fd8afff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6fd8b000 - 0x7fff6fd93fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6fd94000 - 0x7fff6fd9bfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6fd9c000 - 0x7fff6fd9dffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6fd9e000 - 0x7fff6fdebff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6fdec000 - 0x7fff6fe18ff7 libsystem_kernel.dylib (6153.101.6) /usr/lib/system/libsystem_kernel.dylib
0x7fff6fe19000 - 0x7fff6fe64fef libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6fe65000 - 0x7fff6fe8cfff libsystem_malloc.dylib (283.100.5) /usr/lib/system/libsystem_malloc.dylib
0x7fff6fe8d000 - 0x7fff6fe9affb libsystem_networkextension.dylib (1095.100.29) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6fe9b000 - 0x7fff6fea4ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6fea5000 - 0x7fff6feadfef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6feae000 - 0x7fff6feb8fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6feb9000 - 0x7fff6febdff3 libsystem_sandbox.dylib (1217.101.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6febe000 - 0x7fff6fec0fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6fec1000 - 0x7fff6fec8ffb libsystem_symptoms.dylib (1238.100.26) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6fec9000 - 0x7fff6fedfff2 libsystem_trace.dylib (1147.100.8) /usr/lib/system/libsystem_trace.dylib
0x7fff6fee1000 - 0x7fff6fee6ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6fee7000 - 0x7fff6ff1cffe libxpc.dylib (1738.100.39) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 55
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 50213
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=893.6M resident=0K(0%) swapped_out_or_unallocated=893.6M(100%)
Writable regions: Total=4.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 5604K 5
CG image 24K 4
CoreAnimation 36K 7
CoreGraphics 8K 1
CoreImage 24K 5
CoreUI image data 716K 10
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 3.6G 2803
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 96K 24
Stack 144.7M 25
Stack Guard 56.0M 1
VM_ALLOCATE 952.5M 1813
__DATA 49.8M 521
__DATA_CONST 36K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 407.4M 130
__OBJC_RO 32.2M 1
__OBJC_RW 1888K 1
__TEXT 486.2M 490
__UNICODE 564K 1
mapped file 77.2M 38
shared memory 652K 19
=========== ======= =======
TOTAL 5.9G 5927
TOTAL, minus reserved VM space 5.7G 5927
Log:
UCSF ChimeraX version: 0.91 (2019-11-26)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/nuno/Desktop/3jbu.cif
3jbu.cif title:
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps [more
info...]
Chain information for 3jbu.cif #1
---
Chain | Description
0 | 50S ribosomal protein L28
1 | 50S ribosomal protein L29
2 | 50S ribosomal protein L30
3 | 50S ribosomal protein L32
4 | 50S ribosomal protein L33
6 | 50S ribosomal protein L34
7 | 50S ribosomal protein L35
8 | 50S ribosomal protein L36
A | 16S rRNA
B | 30S ribosomal protein S2
C | 30S ribosomal protein S3
D | 30S ribosomal protein S4
E | 30S ribosomal protein S5
F | 30S ribosomal protein S6
G | 30S ribosomal protein S7
H | 30S ribosomal protein S8
I | 30S ribosomal protein S9
J | 30S ribosomal protein S10
K | 30S ribosomal protein S11
L | 30S ribosomal protein S12
M | 30S ribosomal protein S13
N | 30S ribosomal protein S14
O | 30S ribosomal protein S15
P | 30S ribosomal protein S16
Q | 30S ribosomal protein S17
R | 30S ribosomal protein S18
S | 30S ribosomal protein S19
T | 30S ribosomal protein S20
U | 30S ribosomal protein S21
X | mRNA
a | 5S rRNA
b | 23S rRNA
c | 50S ribosomal protein L2
d | 50S ribosomal protein L3
e | 50S ribosomal protein L4
f | 50S ribosomal protein L5
g | 50S ribosomal protein L6
h | 50S ribosomal protein L9
j | 50S ribosomal protein L13
k | 50S ribosomal protein L14
l | 50S ribosomal protein L15
m | 50S ribosomal protein L16
n | 50S ribosomal protein L17
o | 50S ribosomal protein L18
p | 50S ribosomal protein L19
q | 50S ribosomal protein L20
r | 50S ribosomal protein L21
s | 50S ribosomal protein L22
t | 50S ribosomal protein L23
u | 50S ribosomal protein L24
v | glycine-tRNA
w | 50S ribosomal protein L25
y | 50S ribosomal protein L27
z | SecM-glycine
OpenGL version: 4.1 INTEL-14.5.22
OpenGL renderer: Intel HD Graphics 4000 OpenGL Engine
OpenGL vendor: Intel Inc.
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → crash in glDeleteBuffers |
comment:2 by , 6 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Probable graphics driver bug.
"Graphics hardware encountered an error and was reset: 0x00008013"
User had 5.9 Gbyte ChimeraX session running with Intel HD 4000 graphics (circa 2012).