![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Last modified 6 years ago
#3053 feedback defect
Click logged command → crash
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Logging | Version: | |
| Keywords: | Cc: | Tom Goddard, pett | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.4.0-x86_64-i386-64bit
ChimeraX Version: 0.93 (2020-04-03)
Description
Last time you used ChimeraX it crashed.
Chimera keeps crashing after I try clicking on the log window. I run the "vop" command and want to see its usage. So I click on the vop command (in blue) in the log window to see the usage, and it crashes. This is done every time. I just restarted my computer and check all updates but still the crash is occuring.
Hope this helps. Its my first time sending an actual crash report. I just love your program and thought this is a good thing to do.
Process: ChimeraX [72080]
Path: /Applications/ChimeraX-0.93.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.93.0 (0.93.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [72080]
User ID: 501
Date/Time: 2020-04-16 14:16:26.482 +0900
OS Version: Mac OS X 10.15.4 (19E287)
Report Version: 12
Anonymous UUID: BE0719E9-D875-6618-5E38-E25655E9CB23
Sleep/Wake UUID: E5533493-CBF6-41F0-822C-CE8F795B7E77
Time Awake Since Boot: 270000 seconds
Time Since Wake: 16000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00002eb28c487180
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x2eb28c487180:
VM_ALLOCATE 000000014562e000-0000000145a2f000 [ 4100K] rw-/rw- SM=PRV
-->
MALLOC_NANO 0000600000000000-0000600008000000 [128.0M] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6c00e33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6c0cae60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6bf2593e raise + 26
3 libsystem_platform.dylib 0x00007fff6c0bf5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWebEngineCore 0x000000010ff086c6 0x10feda000 + 190150
6 QtWebEngineCore 0x000000010ff07769 0x10feda000 + 186217
7 QtWebEngineCore 0x000000010fef7865 0x10feda000 + 120933
8 QtQuick 0x000000011698b4bc QQuickWindowPrivate::updateDirtyNode(QQuickItem*) + 2908
9 QtQuick 0x000000011697a809 QQuickWindowPrivate::updateDirtyNodes() + 1017
10 QtQuick 0x000000011697a1ff QQuickWindowPrivate::syncSceneGraph() + 271
11 QtQuick 0x0000000116a4fa7c QQuickRenderControl::sync() + 28
12 QtQuickWidgets 0x00000001172cc46a 0x1172c7000 + 21610
13 QtQuickWidgets 0x00000001172cc598 0x1172c7000 + 21912
14 QtCore 0x000000010d5c2cf6 QObject::event(QEvent*) + 102
15 QtWidgets 0x000000010c8ec56a QWidget::event(QEvent*) + 4826
16 QtQuickWidgets 0x00000001172d02ce QQuickWidget::event(QEvent*) + 782
17 QtWebEngineWidgets 0x000000010fead0e7 0x10fe92000 + 110823
18 QtWidgets 0x000000010c8af70d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
19 QtWidgets 0x000000010c8b0b12 QApplication::notify(QObject*, QEvent*) + 594
20 QtWidgets.so 0x000000010c46f3ca sipQApplication::notify(QObject*, QEvent*) + 234
21 QtCore 0x000000010d599564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
22 QtCore 0x000000010d5f2b7f QTimerInfoList::activateTimers() + 991
23 libqcocoa.dylib 0x0000000117521472 0x1174ed000 + 214130
24 com.apple.CoreFoundation 0x00007fff32118f12 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
25 com.apple.CoreFoundation 0x00007fff32118eb1 __CFRunLoopDoSource0 + 103
26 com.apple.CoreFoundation 0x00007fff32118ccb __CFRunLoopDoSources0 + 209
27 com.apple.CoreFoundation 0x00007fff321179fa __CFRunLoopRun + 927
28 com.apple.CoreFoundation 0x00007fff32116ffe CFRunLoopRunSpecific + 462
29 com.apple.HIToolbox 0x00007fff30d4aabd RunCurrentEventLoopInMode + 292
30 com.apple.HIToolbox 0x00007fff30d4a7d5 ReceiveNextEventCommon + 584
31 com.apple.HIToolbox 0x00007fff30d4a579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
32 com.apple.AppKit 0x00007fff2f395c99 _DPSNextEvent + 883
33 com.apple.AppKit 0x00007fff2f3944e0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
34 com.apple.AppKit 0x00007fff2f3861ee -[NSApplication run] + 658
35 libqcocoa.dylib 0x0000000117522223 0x1174ed000 + 217635
36 QtCore 0x000000010d594b7f QEventLoop::exec(QFlags) + 431
37 QtCore 0x000000010d599b72 QCoreApplication::exec() + 130
38 QtWidgets.so 0x000000010c55e7d2 meth_QApplication_exec_(_object*, _object*) + 82
39 org.python.python 0x00000001035c6d62 _PyMethodDef_RawFastCallKeywords + 226
40 org.python.python 0x00000001035c6289 _PyCFunction_FastCallKeywords + 41
41 org.python.python 0x000000010369b300 call_function + 656
42 org.python.python 0x0000000103697fb7 _PyEval_EvalFrameDefault + 26567
43 org.python.python 0x00000001035c6731 function_code_fastcall + 177
44 org.python.python 0x000000010369b374 call_function + 772
45 org.python.python 0x0000000103697fb7 _PyEval_EvalFrameDefault + 26567
46 org.python.python 0x000000010369c1cc _PyEval_EvalCodeWithName + 3276
47 org.python.python 0x00000001035c6249 _PyFunction_FastCallKeywords + 217
48 org.python.python 0x000000010369b374 call_function + 772
49 org.python.python 0x000000010369804e _PyEval_EvalFrameDefault + 26718
50 org.python.python 0x000000010369c1cc _PyEval_EvalCodeWithName + 3276
51 org.python.python 0x0000000103691750 PyEval_EvalCode + 48
52 org.python.python 0x000000010368ece7 builtin_exec + 583
53 org.python.python 0x00000001035c6f15 _PyMethodDef_RawFastCallKeywords + 661
54 org.python.python 0x00000001035c6289 _PyCFunction_FastCallKeywords + 41
55 org.python.python 0x000000010369b300 call_function + 656
56 org.python.python 0x000000010369804e _PyEval_EvalFrameDefault + 26718
57 org.python.python 0x000000010369c1cc _PyEval_EvalCodeWithName + 3276
58 org.python.python 0x00000001035c6249 _PyFunction_FastCallKeywords + 217
59 org.python.python 0x000000010369b374 call_function + 772
60 org.python.python 0x000000010369804e _PyEval_EvalFrameDefault + 26718
61 org.python.python 0x000000010369c1cc _PyEval_EvalCodeWithName + 3276
62 org.python.python 0x00000001035c5d47 _PyFunction_FastCallDict + 455
63 org.python.python 0x00000001036f6293 pymain_run_module + 147
64 org.python.python 0x00000001036f537c pymain_main + 5900
65 org.python.python 0x00000001036f3c63 Py_Main + 51
66 edu.ucsf.cgl.ChimeraX 0x0000000103596dc8 main + 120
67 libdyld.dylib 0x00007fff6bec6cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6c00a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6c0cb425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010507bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff321190b5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff32117b82 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff32116ffe CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2f5375b4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085c7f 0x10feda000 + 35306623
4 QtWebEngineCore 0x0000000112039aad 0x10feda000 + 34994861
5 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
6 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff6c00c766 kevent + 10
1 QtWebEngineCore 0x00000001123473f9 0x10feda000 + 38196217
2 QtWebEngineCore 0x000000011234470d 0x10feda000 + 38184717
3 QtWebEngineCore 0x00000001120fb72c 0x10feda000 + 35788588
4 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
5 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
6 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
7 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff6c00c766 kevent + 10
1 QtWebEngineCore 0x00000001123473f9 0x10feda000 + 38196217
2 QtWebEngineCore 0x000000011234470d 0x10feda000 + 38184717
3 QtWebEngineCore 0x00000001120fb714 0x10feda000 + 35788564
4 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
5 QtWebEngineCore 0x00000001120a44c4 0x10feda000 + 35431620
6 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 6:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dd14 0x10feda000 + 35405076
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dd14 0x10feda000 + 35405076
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 8:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dc84 0x10feda000 + 35404932
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 9:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dc84 0x10feda000 + 35404932
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 10:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6c00c766 kevent + 10
1 QtWebEngineCore 0x00000001123473f9 0x10feda000 + 38196217
2 QtWebEngineCore 0x000000011234470d 0x10feda000 + 38184717
3 QtWebEngineCore 0x00000001120fb714 0x10feda000 + 35788564
4 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
5 QtWebEngineCore 0x00000001119c8a74 0x10feda000 + 28240500
6 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 11:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085c7f 0x10feda000 + 35306623
4 QtWebEngineCore 0x000000011209d76a 0x10feda000 + 35403626
5 QtWebEngineCore 0x000000011209de0f 0x10feda000 + 35405327
6 QtWebEngineCore 0x000000011209dcb4 0x10feda000 + 35404980
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 12:: CompositorTileWorker1/72195
0 libsystem_kernel.dylib 0x00007fff6c00a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6c0cb425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x00000001120f39f8 0x10feda000 + 35756536
3 QtWebEngineCore 0x000000011307bfe8 0x10feda000 + 52043752
4 QtWebEngineCore 0x00000001120b40e4 0x10feda000 + 35496164
5 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
6 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085c7f 0x10feda000 + 35306623
4 QtWebEngineCore 0x0000000112039aad 0x10feda000 + 34994861
5 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
6 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085c7f 0x10feda000 + 35306623
4 QtWebEngineCore 0x0000000112039aad 0x10feda000 + 34994861
5 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
6 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 15:: Chrome_InProcGpuThread
0 QtWebEngineCore 0x00000001132d9414 0x10feda000 + 54522900
1 QtWebEngineCore 0x00000001132d7a1e 0x10feda000 + 54516254
2 QtWebEngineCore 0x00000001132cabf7 0x10feda000 + 54463479
3 QtWebEngineCore 0x0000000113264517 0x10feda000 + 54043927
4 QtWebEngineCore 0x0000000113263e01 0x10feda000 + 54042113
5 QtWebEngineCore 0x00000001132659d1 0x10feda000 + 54049233
6 QtWebEngineCore 0x0000000113238af8 0x10feda000 + 53865208
7 QtWebEngineCore 0x00000001132363fe 0x10feda000 + 53855230
8 QtWebEngineCore 0x00000001132192ca 0x10feda000 + 53736138
9 QtWebEngineCore 0x0000000113218ca6 0x10feda000 + 53734566
10 QtWebEngineCore 0x00000001131b1895 0x10feda000 + 53311637
11 QtWebEngineCore 0x000000011318977c 0x10feda000 + 53147516
12 QtWebEngineCore 0x00000001131a7be6 0x10feda000 + 53271526
13 QtWebEngineCore 0x0000000113145148 0x10feda000 + 52867400
14 QtWebEngineCore 0x00000001132efd7d 0x10feda000 + 54615421
15 QtWebEngineCore 0x00000001132efbd4 0x10feda000 + 54614996
16 QtWebEngineCore 0x00000001132ee8cb 0x10feda000 + 54610123
17 QtWebEngineCore 0x00000001132f8e87 0x10feda000 + 54652551
18 QtWebEngineCore 0x00000001132f71b2 0x10feda000 + 54645170
19 QtWebEngineCore 0x000000011314a90e 0x10feda000 + 52889870
20 QtWebEngineCore 0x0000000112012002 0x10feda000 + 34832386
21 QtWebEngineCore 0x000000011203855f 0x10feda000 + 34989407
22 QtWebEngineCore 0x0000000112038af9 0x10feda000 + 34990841
23 QtWebEngineCore 0x0000000112039ac6 0x10feda000 + 34994886
24 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
25 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
26 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
27 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
28 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 16:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6c00c766 kevent + 10
1 QtWebEngineCore 0x00000001123473f9 0x10feda000 + 38196217
2 QtWebEngineCore 0x000000011234470d 0x10feda000 + 38184717
3 QtWebEngineCore 0x00000001120fb72c 0x10feda000 + 35788588
4 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
5 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
6 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
7 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 17:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085c7f 0x10feda000 + 35306623
4 QtWebEngineCore 0x000000011209d76a 0x10feda000 + 35403626
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dd74 0x10feda000 + 35405172
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085c7f 0x10feda000 + 35306623
4 QtWebEngineCore 0x0000000112039aad 0x10feda000 + 34994861
5 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
6 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 19:
0 libsystem_pthread.dylib 0x00007fff6c0c6b68 start_wqthread + 0
Thread 20:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209de0f 0x10feda000 + 35405327
6 QtWebEngineCore 0x000000011209dd14 0x10feda000 + 35405076
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff6c0c6b68 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6c0c6b68 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6c0c6b68 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff6c0c6b68 start_wqthread + 0
Thread 25:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112039aa2 0x10feda000 + 34994850
4 QtWebEngineCore 0x0000000112062ad5 0x10feda000 + 35162837
5 QtWebEngineCore 0x00000001120b540c 0x10feda000 + 35501068
6 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
7 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 26:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209de0f 0x10feda000 + 35405327
6 QtWebEngineCore 0x000000011209dd14 0x10feda000 + 35405076
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 27:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dc84 0x10feda000 + 35404932
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 28:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6c007dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6c008170 mach_msg + 60
2 QtWebEngineCore 0x0000000112085d7d 0x10feda000 + 35306877
3 QtWebEngineCore 0x0000000112085e71 0x10feda000 + 35307121
4 QtWebEngineCore 0x000000011209d778 0x10feda000 + 35403640
5 QtWebEngineCore 0x000000011209e0ab 0x10feda000 + 35405995
6 QtWebEngineCore 0x000000011209dc84 0x10feda000 + 35404932
7 QtWebEngineCore 0x00000001120f5167 0x10feda000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6c0cb109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6c0c6b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010fb13dc0 rcx: 0x0000000103a46a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x0000000103a46a80 rsp: 0x0000000103a46a58
r8: 0x0000000103a46f48 r9: 0x3c0085c794449398 r10: 0x000000010fb13dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6c00e33a rfl: 0x0000000000000246 cr2: 0x0000000103800fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6b2c6000 - 0x7fff6b2d3ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff6b2d9000 - 0x7fff6b3bbff7 libxml2.2.dylib (33.3) /usr/lib/libxml2.2.dylib
0x7fff6b3bf000 - 0x7fff6b3e7fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff6b3e8000 - 0x7fff6b3faff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff6bca8000 - 0x7fff6bcadff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff6bcae000 - 0x7fff6bcb9fff libcommonCrypto.dylib (60165) /usr/lib/system/libcommonCrypto.dylib
0x7fff6bcba000 - 0x7fff6bcc1fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6bcc2000 - 0x7fff6bccbff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6bccc000 - 0x7fff6bd5efe3 libcorecrypto.dylib (866.100.30) /usr/lib/system/libcorecrypto.dylib
0x7fff6be6b000 - 0x7fff6beabff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6beac000 - 0x7fff6bee2fff libdyld.dylib (750.5) /usr/lib/system/libdyld.dylib
0x7fff6bee3000 - 0x7fff6bee3ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6bee4000 - 0x7fff6bef0ff3 libkxld.dylib (6153.101.6) /usr/lib/system/libkxld.dylib
0x7fff6bef1000 - 0x7fff6bef1ff7 liblaunch.dylib (1738.100.39) /usr/lib/system/liblaunch.dylib
0x7fff6bef2000 - 0x7fff6bef7ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6bef8000 - 0x7fff6befaff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6befb000 - 0x7fff6befcff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6befd000 - 0x7fff6bf14ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6bf15000 - 0x7fff6bf15ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6bf16000 - 0x7fff6bf9dfff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6bf9e000 - 0x7fff6bfa1ffb libsystem_configuration.dylib (1061.101.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff6bfa2000 - 0x7fff6bfa5fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6bfa6000 - 0x7fff6bfaefff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6bfaf000 - 0x7fff6bfb6fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6bfb7000 - 0x7fff6bfb8ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6bfb9000 - 0x7fff6c006ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6c007000 - 0x7fff6c033ff7 libsystem_kernel.dylib (6153.101.6) /usr/lib/system/libsystem_kernel.dylib
0x7fff6c034000 - 0x7fff6c07bfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6c07c000 - 0x7fff6c0a3fff libsystem_malloc.dylib (283.100.5) /usr/lib/system/libsystem_malloc.dylib
0x7fff6c0a4000 - 0x7fff6c0b1ffb libsystem_networkextension.dylib (1095.100.29) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6c0b2000 - 0x7fff6c0bbff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6c0bc000 - 0x7fff6c0c4fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6c0c5000 - 0x7fff6c0cffff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6c0d0000 - 0x7fff6c0d4ff3 libsystem_sandbox.dylib (1217.101.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6c0d5000 - 0x7fff6c0d7fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6c0d8000 - 0x7fff6c0dfffb libsystem_symptoms.dylib (1238.100.26) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6c0e0000 - 0x7fff6c0f6ff2 libsystem_trace.dylib (1147.100.8) /usr/lib/system/libsystem_trace.dylib
0x7fff6c0f8000 - 0x7fff6c0fdff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6c0fe000 - 0x7fff6c133ffe libxpc.dylib (1738.100.39) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 185060
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=937.8M resident=0K(0%) swapped_out_or_unallocated=937.8M(100%)
Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 164K 10
CoreAnimation 192K 17
CoreGraphics 8K 1
CoreImage 24K 2
CoreServices 100K 1
CoreUI image data 2808K 23
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 602.5M 391
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 112K 28
Stack 179.7M 29
Stack Guard 56.0M 1
VM_ALLOCATE 197.1M 345
__DATA 51.3M 543
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 412.2M 136
__OBJC_RO 32.2M 1
__OBJC_RW 1892K 2
__TEXT 525.6M 505
__UNICODE 564K 1
mapped file 86.8M 42
shared memory 652K 18
=========== ======= =======
TOTAL 2.2G 2125
TOTAL, minus reserved VM space 2.1G 2125
Log:
UCSF ChimeraX version: 0.93 (2020-04-03)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.5.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.
Change History (6)
comment:1 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Logging |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Click logged command → crash |
comment:2 by , 6 years ago
I can't test this, so I defer to someone with a Mac. If this is reproducible, then there's a chance that Qt 5.12.8 will fix it, so I'll work on rebuilding PyQt.
comment:3 by , 6 years ago
We don't have a Catalina Mac at the meng/pettersen homestead, which is why I cc'ed Tom. Maybe he does?
follow-up: 4 comment:4 by , 6 years ago
I tested on the same macOS 10.15.4 with the same ChimeraX 0.93 release and clicking on the vop link in the Log window after running the command (vop gauss #1 sdev 3) worked correctly showing the help page. Possibly the crash has to do with the Intel Iris Plus Graphics 640 on this user's computer (probable MacBook 2017 model). My test machine has Radeon Vega 20 graphics. QWebEngine seems to often be the source of unexplained crashes. Another possibility is that the user has some other tool showing that is needed to cause the crash. It would be helpful if the user provided a screen capture just before they click the vop link leading to the crash. Also does it crash no matter what command link is clicked, or only for the vop command?
comment:5 by , 6 years ago
| Status: | assigned → feedback |
|---|
comment:6 by , 6 years ago
Can you try again with the current daily build? We have upgraded the graphical user interface from Qt 5.12.7 to Qt 5.12.7. Thanks for your help, Greg
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Worked okay for me using the exact same ChimeraX version. However, I'm running Mac OS Mojave and she's running Catalina.
--Eric