Opened 5 years ago

Closed 5 years ago

#3113 closed defect (duplicate)

Surface caps: Array argument has non-numeric values

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Surface Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett) 

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-07-30)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-07-30)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_000.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_001.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_002.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_003.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_004.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_005.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_006.mrc" "/Users/psexton/Documents/Science/GPCR structure projects
3/SecR/Secretin receptor data from Sarah/CryoSparc multivzriant/Component
000/frame_007 (1).mrc" "/Users/psexton/Documents/Science/GPCR structure
projects 3/SecR/Secretin receptor data from Sarah/CryoSparc
multivzriant/Component 000/frame_008.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_009.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_010.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_011.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_012.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_013.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_014.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_015.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_016.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_017.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_018.mrc"
"/Users/psexton/Documents/Science/GPCR structure projects 3/SecR/Secretin
receptor data from Sarah/CryoSparc multivzriant/Component 000/frame_019.mrc"
vseries true

Opened map series frame_000.mrc, 20 images, grid size 288,288,288, pixel 0.83,
shown at level 0.154, step 2, values float32  

> view clip false

> toolshed show "Side View"

Traceback (most recent call last):  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 127, in _redraw_timer_callback  
self.draw_new_frame()  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 127, in _redraw_timer_callback  
self.draw_new_frame()  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 127, in _redraw_timer_callback  
self.draw_new_frame()  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  

[lots of these deleted]

Traceback (most recent call last):  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 127, in _redraw_timer_callback  
self.draw_new_frame()  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 127, in _redraw_timer_callback  
self.draw_new_frame()  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Users/psexton/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-2.11.21
OpenGL renderer: AMD Radeon RX Vega 56 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Change History (2)

comment:1 by pett, 5 years ago

Component: Unassigned → Surface
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Surface caps: Array argument has non-numeric values

comment:2 by Tom Goddard, 5 years ago

Resolution: → duplicate
Status: assigned → closed

Fixed in July 31, 2019.

Duplicate #2277

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