Opened 5 years ago
Closed 5 years ago
#3103 closed defect (can't reproduce)
Strudel Score can't write its own config file
Reported by: | Owned by: | ||
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Third Party | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-19.4.0-x86_64-i386-64bit ChimeraX Version: 0.93 (2020-04-03) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.93 (2020-04-03) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed show "Strudel Score" INTEGRATING Inject data called fill selectors called all chains (fill selectors) ['No chains found'] Running: close all > close all All chains (set data) ['A'] active chain (set data) A Inject data called fill selectors called all chains (fill selectors) ['A'] Y-RANGE Expanded active chain (update left) A Running: open /Users/ardan/Downloads/T0102_correct_small_example/out_1.3/input/T0102.map > open > /Users/ardan/Downloads/T0102_correct_small_example/out_1.3/input/T0102.map Opened T0102.map, grid size 336,336,336, pixel 0.65, shown at level 1.29e-06, step 2, values float32 Running: volume #1 sdLevel 6 style mesh step 1 > volume #1 sdLevel 6 style mesh step 1 Running: open /Users/ardan/Downloads/T0102_correct_small_example/out_1.3/input/T0102EM010_1.cif > open > /Users/ardan/Downloads/T0102_correct_small_example/out_1.3/input/T0102EM010_1.cif Summary of feedback from opening /Users/ardan/Downloads/T0102_correct_small_example/out_1.3/input/T0102EM010_1.cif --- warning | Unknown polymer entity '1' near line 77 Chain information for T0102EM010_1.cif #2 --- Chain | Description A | ? Running: style stick > style stick Changed 1413 atom styles Running: size stickRadius 0.03 > size stickRadius 0.03 Changed 1442 bond radii Running: ~ribbon > ~ribbon Running: show atoms > show atoms model_obj <Structure id=T0102EM010_1> Traceback (most recent call last): File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 149, in set_library with open(self.config_path, 'w') as f: PermissionError: [Errno 13] Permission denied: '/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/config.txt' PermissionError: [Errno 13] Permission denied: '/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/config.txt' File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 149, in set_library with open(self.config_path, 'w') as f: See log for complete Python traceback. Traceback (most recent call last): File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 149, in set_library with open(self.config_path, 'w') as f: PermissionError: [Errno 13] Permission denied: '/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/config.txt' PermissionError: [Errno 13] Permission denied: '/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/config.txt' File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 149, in set_library with open(self.config_path, 'w') as f: See log for complete Python traceback. Traceback (most recent call last): File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 149, in set_library with open(self.config_path, 'w') as f: PermissionError: [Errno 13] Permission denied: '/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/config.txt' PermissionError: [Errno 13] Permission denied: '/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/config.txt' File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 149, in set_library with open(self.config_path, 'w') as f: See log for complete Python traceback. All chains (set data) ['A'] active chain (set data) A Y-RANGE Expanded active chain (update left) A Traceback (most recent call last): File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 184, in open_project folders = os.listdir(set_path) FileNotFoundError: [Errno 2] No such file or directory: '' FileNotFoundError: [Errno 2] No such file or directory: '' File "/Users/ardan/Library/Application Support/ChimeraX/0.93/site- packages/chimerax/strudel_score/tool.py", line 184, in open_project folders = os.listdir(set_path) See log for complete Python traceback. OpenGL version: 4.1 ATI-3.8.24 OpenGL renderer: AMD Radeon Pro Vega 16 OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (1)
comment:1 by , 5 years ago
Component: | Unassigned → Third Party |
---|---|
Platform: | → all |
Project: | → ChimeraX |
Resolution: | → can't reproduce |
Status: | new → closed |
Summary: | ChimeraX bug report submission → Strudel Score can't write its own config file |
Note:
See TracTickets
for help on using tickets.