Ticket #3087: split model.html

File split model.html, 5.3 KB (added by perth2000.geo@…, 6 years ago)

Added by email2trac

Line 
1<html>
2<head>
3<meta charset='utf-8'>
4<title> ChimeraX Log </title>
5<script type="text/javascript">
6window.onload = function() {
7 cxlinks_base="http://www.rbvi.ucsf.edu/chimerax/docs/"
8 if(!window.navigator.userAgent.includes("ChimeraX")){
9 window.onclick = function(e){
10 if(e.target.tagName.toLowerCase()!="a")
11 return true;
12 var url=e.target.getAttribute("href").toLowerCase();
13 if(url.startsWith("help:")){
14 window.location.href = cxlinks_base + url.substring(5);
15 return false;
16 }
17 if(url.startsWith("cxcmd:")){
18 alert("This link only works in a ChimeraX browser and would execute a command.");
19 return false;
20 }
21 return true;
22 }
23 var ls=document.links;
24 for(var i=0;i<ls.length;i++){
25 var link=ls[i];
26 var url=link.getAttribute("href").toLowerCase();
27 if(url.startsWith("cxcmd:"))
28 link.style.color="darkred";
29 }
30 }
31};
32</script>
33</head>
34<h1> ChimeraX Log </h1>
35<style>
36
37.cxcmd {
38 display: block;
39 font-weight: bold;
40 margin-top: .5em;
41 background-color: #ddd;
42}
43a.no_underline {
44 text-decoration: none;
45}
46
47.cxcmd_as_doc {
48 display: inline;
49}
50.cxcmd_as_cmd {
51 display: none;
52}
53</style>
54UCSF ChimeraX version: 0.91 (2019-10-08)<br>
55© 2016-2019 Regents of the University of California. All rights reserved.<br>
56<a href="cxcmd:help help:credits.html">How to cite UCSF ChimeraX</a><br/><div class="cxcmd"><div class="cxcmd_as_doc"><a href="help:user/commands/open.html">open</a> &quot;/Users/oldimac/Desktop/1ACE2_SpikeProtein/SARS-CoV-2_ACE2/6y2g_Mpr_O6K_Mar 4, 2020/6y2gMovie.cxs&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:open &quot;/Users/oldimac/Desktop/1ACE2_SpikeProtein/SARS-CoV-2_ACE2/6y2g_Mpr_O6K_Mar 4, 2020/6y2gMovie.cxs&quot;">open &quot;/Users/oldimac/Desktop/1ACE2_SpikeProtein/SARS-CoV-2_ACE2/6y2g_Mpr_O6K_Mar 4, 2020/6y2gMovie.cxs&quot;</a></div></div>opened ChimeraX session<br>
57<div class="cxcmd"><div class="cxcmd_as_doc"><a href="help:user/commands/split.html">split</a></div><div class="cxcmd_as_cmd"><a href="cxcmd:split">split</a></div></div>
58<table border=1 cellpadding=4 cellspacing=0>
59 <thead>
60 <tr>
61 <th colspan="2">Chain information for 6Y2G.cif A #1.1</th>
62 </tr>
63 <tr>
64 <th>Chain</th>
65 <th>Description</th>
66 </tr>
67 </thead>
68 <tbody>
69 <tr>
70 <td style="text-align:center"><a title="Select chain" href="cxcmd:select #1.1/A:1-301">A</a> </td> <td><a title="Show sequence" href="cxcmd:sequence chain #1.1/A">No description available</a> </td> </tr>
71 </tbody>
72</table><br/>
73<table border=1 cellpadding=4 cellspacing=0>
74 <thead>
75 <tr>
76 <th colspan="2">Chain information for 6Y2G.cif B #1.2</th>
77 </tr>
78 <tr>
79 <th>Chain</th>
80 <th>Description</th>
81 </tr>
82 </thead>
83 <tbody>
84 <tr>
85 <td style="text-align:center"><a title="Select chain" href="cxcmd:select #1.2/B:1-303">B</a> </td> <td><a title="Show sequence" href="cxcmd:sequence chain #1.2/B">No description available</a> </td> </tr>
86 </tbody>
87</table><br/>Split 6Y2G.cif (#1) into 2 models<br>
88Traceback (most recent call last):<br>
89&nbsp;&nbsp;File &quot;/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/triggerset.py&quot;, line 130, in invoke<br>
90&nbsp;&nbsp;&nbsp;&nbsp;return self._func(self._name, data)<br>
91&nbsp;&nbsp;File &quot;/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py&quot;, line 517, in _mmap_mod_cb<br>
92&nbsp;&nbsp;&nbsp;&nbsp;self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)<br>
93KeyError: &lt;chimerax.atomic.molobject.Sequence object at 0x12bd40450&gt;<br>
94<br/>Error processing trigger "modified":<br>KeyError: <chimerax.atomic.molobject.Sequence object at 0x12bd40450><br><br> File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py", line 517, in _mmap_mod_cb<br> self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)<br><br><i>See log for complete Python traceback.</i><br><br/>Traceback (most recent call last):<br>
95&nbsp;&nbsp;File &quot;/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/triggerset.py&quot;, line 130, in invoke<br>
96&nbsp;&nbsp;&nbsp;&nbsp;return self._func(self._name, data)<br>
97&nbsp;&nbsp;File &quot;/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py&quot;, line 517, in _mmap_mod_cb<br>
98&nbsp;&nbsp;&nbsp;&nbsp;self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)<br>
99KeyError: &lt;chimerax.atomic.molobject.Sequence object at 0x1254bee10&gt;<br>
100<br/>Error processing trigger "modified":<br>KeyError: <chimerax.atomic.molobject.Sequence object at 0x1254bee10><br><br> File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py", line 517, in _mmap_mod_cb<br> self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)<br><br><i>See log for complete Python traceback.</i><br><br/></body>
101</html>