![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jun 24, 2023:
- 7:41 AM Ticket #9248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:44 AM Ticket #9247 (Failed to create NSOpenGLContext) created by
- […]
- 2:26 AM Ticket #9246 (Item table column sorting: 'QCxTableModel' object has no attribute ...) created by
- […]
Jun 23, 2023:
- 4:38 PM Ticket #6511 (Focus on sequence selection) closed by
- fixed: Okay, now if you bring up the context menu over a sequence, there will …
- 2:22 PM Ticket #9245 (Crash in chain.existing_residues) created by
- […]
- 11:45 AM Ticket #9244 (AttributeError: module 'collections' has no attribute 'Set') closed by
- fixed
- 11:33 AM Ticket #9244 (AttributeError: module 'collections' has no attribute 'Set') created by
- […]
- 11:25 AM Ticket #9241 (Save MRC: could not broadcast input array) closed by
- worksforme: I tested the same steps: open map, z flip, close original map, save …
- 10:58 AM Ticket #9239 (Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash. Same reporter, same crash as #9238.
- 10:57 AM Ticket #9238 (Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 9:06 AM Ticket #9243 (Bundles not installing) created by
- […]
- 7:58 AM Ticket #9242 (Crash starting simulation) created by
- […]
- 4:39 AM Ticket #9241 (Save MRC: could not broadcast input array) created by
- […]
Jun 22, 2023:
- 7:00 PM Ticket #9240 (ArtiaX session save: Unknown class name 'ArtiaX') created by
- […]
- 5:31 PM apple-dev edited by
- (diff)
- 5:14 PM apple-dev created by
- 5:09 PM WikiStart edited by
- (diff)
- 4:55 PM Ticket #9239 (Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650) created by
- […]
- 4:48 PM ChangeLog edited by
- (diff)
- 2:49 PM Ticket #9238 (Graphics crash, macOS 11.7.7, Intel Iris Plus Graphics 650) created by
- […]
- 2:21 PM Ticket #9228 (Possible problem with file history) closed by
- can't reproduce: I'm glad you fixed the problem. ChimeraX saves its settings and file …
- 1:41 PM Ticket #9237 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac
- 1:38 PM Ticket #9237 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:35 PM Ticket #9235 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac
- 1:34 PM Ticket #9234 (MemoryError opening mmCIF) closed by
- duplicate
- 1:33 PM Ticket #9233 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 1:26 PM Ticket #9231 (XMAS: crash in ~QGridLayout()) closed by
- duplicate
- 1:25 PM Ticket #9230 (Crash gathering atomic session info) closed by
- can't reproduce: Version 1.1(!)
- 1:24 PM Ticket #9229 (Crash creating QWebEngineProfile at startup) closed by
- can't reproduce: 1.2.5
- 1:19 PM Ticket #9227 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 1:06 PM Ticket #9236 (ChimeraX downloads/registrations/webservices maps) created by
- Port the Chimera geographic maps to ChimeraX. Chimera version is in …
- 1:00 PM Ticket #9235 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 12:16 PM 2023-6-22 edited by
- (diff)
- 10:43 AM ChangeLog edited by
- (diff)
- 10:18 AM Ticket #9234 (MemoryError opening mmCIF) created by
- […]
- 9:14 AM Ticket #9233 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:17 AM Ticket #9232 (Wrong pandas installed) created by
- […]
- 5:48 AM Ticket #9231 (XMAS: crash in ~QGridLayout()) created by
- […]
Jun 21, 2023:
- 6:33 PM Ticket #9038 (back/forward arrow selection keys) closed by
- fixed: Left/right arrow keys invert selection in currently selected models. …
- 6:17 PM Ticket #9041 (Translate IUPAC names) closed by
- fixed: Also added IUPAC fetch to Build Structure
- 3:49 PM Ticket #9230 (Crash gathering atomic session info) created by
- […]
- 2:59 PM Ticket #9229 (Crash creating QWebEngineProfile at startup) created by
- […]
- 2:46 PM Ticket #9228 (Possible problem with file history) created by
- […]
- 12:10 PM Ticket #9227 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:38 AM Ticket #9223 (Help from developers for a "not easy" question) closed by
- not a bug: This question belongs on the mailing list, not as a bug report. I'll …
- 11:29 AM Ticket #9226 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 11:26 AM Ticket #9226 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:12 AM Ticket #9224 (Crash showing vseries) closed by
- can't reproduce: I don't see any clues in this bug report about why ChimeraX crashed …
- 10:59 AM Ticket #9222 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 10:58 AM Ticket #9225 (ISOLDE: Residue has multiple bonds to neighbor) created by
- […]
- 10:39 AM Ticket #9221 (Crash after opening session file) closed by
- can't reproduce
- 10:26 AM Ticket #9220 (TypeError: 'GlobalColor' object is not iterable) closed by
- duplicate: Hi Mohammed, Thanks for reporting this problem. It was fixed about …
- 9:22 AM Ticket #9224 (Crash showing vseries) created by
- […]
- 7:58 AM Ticket #9223 (Help from developers for a "not easy" question) created by
- […] …
- 7:55 AM Ticket #9222 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:08 AM Ticket #9221 (Crash after opening session file) created by
- […]
- 2:10 AM Ticket #9220 (TypeError: 'GlobalColor' object is not iterable) created by
- […]
Jun 20, 2023:
- 1:30 PM Ticket #9197 (Session close, bond rotations: 'list' object has no attribute 'values') closed by
- limitation: You can't restore the session saved from the 1.7 daily build in the …
- 1:12 PM Ticket #9219 (GLTF viewer colors differ from original ChimeraX colors) created by
- […]
- 11:00 AM Ticket #9216 (Crash in graphics.drawing.empty_drawing) closed by
- can't reproduce: Probably a garbage collection crash. The line of code where it …
- 10:52 AM 2023-6-22 created by
- 10:51 AM Dev2023-6-26 created by
- 10:50 AM DeveloperMeetings edited by
- (diff)
- 10:37 AM Ticket #9205 (Graphics crash, macOS 10.15.4, Intel) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:34 AM Ticket #9196 (Movie duplicate: No such file or directory) closed by
- not a bug: User tried to duplicate a movie frame before any frame was recorded. …
- 10:04 AM Ticket #9218 (ISOLDE: OpenMMException: Error compiling kernel) created by
- […]
- 9:10 AM Ticket #9217 (Crash in event loop) closed by
- can't reproduce
- 9:06 AM Ticket #9215 (Maestro: KeyError: 'i_m_residue_number') closed by
- can't reproduce: Missing residue number implies a lot of follow-on problems. Would …
- 9:01 AM Ticket #9213 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac
- 9:00 AM Ticket #9212 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 8:58 AM Ticket #9211 (Restore new session in old ChimeraX) closed by
- limitation
- 8:57 AM Ticket #9210 (Crash in event loop) closed by
- can't reproduce
- 8:54 AM Ticket #9208 (Crash updating log) closed by
- can't reproduce
- 8:53 AM Ticket #9207 (Unknown crash) closed by
- can't reproduce
- 8:23 AM Ticket #9217 (Crash in event loop) created by
- […]
- 6:32 AM Ticket #9216 (Crash in graphics.drawing.empty_drawing) created by
- […]
- 4:38 AM Ticket #9215 (Maestro: KeyError: 'i_m_residue_number') created by
- […]
- 2:38 AM Ticket #9214 (ChimeraX 1.6.1 can not save as mmcif format while computedSheets is true) created by
- […]
- 1:29 AM Ticket #9213 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jun 19, 2023:
- 11:33 PM Ticket #9212 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:17 PM Ticket #9211 (Restore new session in old ChimeraX) created by
- […]
- 11:18 AM Ticket #9206 (PY_SSIZE_T_CLEAN macro must be defined for '#' formats) closed by
- fixed
- 8:55 AM Ticket #9210 (Crash in event loop) created by
- […]
- 8:24 AM Ticket #9209 (XMAS: Z score; KeyError: 'fix') created by
- […]
Jun 18, 2023:
- 10:36 PM Ticket #9208 (Crash updating log) created by
- […]
- 6:07 PM Ticket #9207 (Unknown crash) created by
- […]
- 5:11 PM Ticket #9206 (PY_SSIZE_T_CLEAN macro must be defined for '#' formats) created by
- […]
- 2:52 PM Ticket #9200 (Maestro: KeyError: 'i_m_residue_number') closed by
- can't reproduce: No residue number implies probably a bunch of other problems down the …
- 2:34 PM Ticket #9204 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 2:15 PM Ticket #9199 (Unknown crash) closed by
- can't reproduce: Hi Sid, Thanks for reporting this problem. I would recommend …
- 2:09 PM Ticket #9198 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 1:17 PM Ticket #9205 (Graphics crash, macOS 10.15.4, Intel) created by
- […]
- 11:31 AM Ticket #9204 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 5:10 AM Ticket #9203 (MemoryError open mmCIF) created by
- […]
- 5:08 AM Ticket #9202 (MemoryError open mmCIF) created by
- […]
- 5:07 AM Ticket #9201 (MemoryError open mmCIF) created by
- […]
- 2:15 AM Ticket #9200 (Maestro: KeyError: 'i_m_residue_number') created by
- […]
Jun 17, 2023:
- 8:58 AM Ticket #9199 (Unknown crash) created by
- […]
- 8:01 AM Ticket #9198 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jun 16, 2023:
- 6:56 PM Ticket #9197 (Session close, bond rotations: 'list' object has no attribute 'values') created by
- […]
- 2:21 PM Ticket #9196 (Movie duplicate: No such file or directory) created by
- […]
- 1:52 PM Ticket #9192 (Bundles not installing) closed by
- fixed: Fixed for Windows, too.
- 11:22 AM Ticket #9195 (Graphics crash, macOS 13.4, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 3:30 AM Ticket #9195 (Graphics crash, macOS 13.4, Intel UHD Graphics 617) created by
- […]
Jun 15, 2023:
- 9:50 PM Ticket #9194 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 8:02 PM 2023-6-15 edited by
- (diff)
- 7:28 PM Ticket #9193 (Computing molecular solvent excluded surface is slow for large numbers ...) closed by
- fixed: Fixed. The 6b1t virus capsid (6 million atoms) where the surface at …
- 7:06 PM Ticket #9193 (Computing molecular solvent excluded surface is slow for large numbers ...) created by
- […]
- 6:06 PM Ticket #8285 (Add option to uniprot open command to associate sequence with a ...) closed by
- fixed: Implemented. Revised the chain table to use it. Code change: …
- 2:10 PM NIAID2023 edited by
- (diff)
- 2:06 PM NIAID2023 edited by
- (diff)
- 1:25 PM NIAID2023 edited by
- (diff)
- 10:46 AM ChangeLog edited by
- (diff)
- 10:30 AM Ticket #9189 (MemoryError saving map in session) closed by
- duplicate: Used volume split by zone on 800x800x800 maps producing many of them …
- 10:28 AM Ticket #9185 (Crash in QDockWidget processing mouse event while running AlphaFold ...) closed by
- can't reproduce: Probably PyQt or Qt bug.
- 9:33 AM Ticket #9188 (ArtiaX: problem loading Star file) closed by
- fixed: Removing spaces from file resolved the issue.
- 9:30 AM Ticket #9187 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac dual display
- 9:27 AM Ticket #9186 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) closed by
- duplicate
- 9:23 AM Ticket #9192 (Bundles not installing) created by
- […]
- 7:41 AM Ticket #9191 ('devel install' going into system Python) created by
- […]
- 3:42 AM Ticket #9190 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 12:51 AM Ticket #9189 (MemoryError saving map in session) created by
- […]
Jun 14, 2023:
- 8:15 PM Ticket #9188 (ArtiaX: problem loading Star file) created by
- […]
- 6:24 PM Ticket #9187 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:03 PM Ticket #2143 (Mouse mode that centers and pivots) closed by
- fixed: This was added as the "center" mouse mode. Ticket #9183 I added a …
- 2:01 PM Ticket #9183 (Centering mouse mode) closed by
- fixed: Done. I added a new mouse mode called "center" that centers what is …
- 1:45 PM Ticket #9186 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) created by
- […]
- 1:44 PM Ticket #9185 (Crash in QDockWidget processing mouse event while running AlphaFold ...) created by
- […]
- 12:28 PM Ticket #9184 (Bigger initial Download DICOM tool) created by
- 10:54 AM Ticket #9180 (QTimer.start() requires integer argument) closed by
- fixed: So there's more of these things. I fixed this one.
- 10:04 AM Ticket #9097 (Download DICOM: impatiently clicking "Drill down" twice crashes ChimeraX) closed by
- fixed: The sequence of user inputs needed to cause this has recently been …
- 10:03 AM Ticket #9130 (Early "Drill down to studies" crashes) closed by
- fixed: The sequence of inputs needed to cause this has recently been made …
- 10:03 AM Ticket #9157 (Daily build does not start on Mac) closed by
- fixed: Daily build now opens
- 7:39 AM Ticket #9183 (Centering mouse mode) created by
- […]
- 2:51 AM Ticket #8814 (ISOLDE: assigned geometry mismatch) closed by
- fixed: I take it this is working for you now? I'm afraid I was a bit slack …
- 2:25 AM Ticket #8866 (Dead PositionRestraintMgr (and other problems)) closed by
- fixed: Fixed since ISOLDE 1.5: prior to that version, closing a model with an …
- 2:20 AM Ticket #8990 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- fixed: Sorry for the slow response, but updating to the official ISOLDE 1.6 …
- 2:18 AM Ticket #8996 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- fixed: Sorry for the slow response on this, but updating ChimeraX to 1.6.1 …
- 2:12 AM Ticket #9107 (ISOLDE unparameterized validation tab: 'NoneType' object has no ...) closed by
-
fixed: Fixed. Was using the
QTreeWidget.itemClickedsignal to check when to … - 1:16 AM Ticket #9168 (ISOLDE: OpenMMException: Error compiling kernel) closed by
- duplicate: Duplicate of #9173.
- 1:15 AM Ticket #8943 (ISOLDE: _populate_platform_combo_box: tuple.index(x): x not in tuple) closed by
- fixed: Fixed in the ISOLDE 1.6 release.
- 1:13 AM Ticket #9173 (ISOLDE 1.6: OpenMMException: Error compiling kerne) closed by
- can't reproduce: I'm sorry I can't be of more help in this case. It's the first time …
- 12:43 AM Ticket #9182 (MemoryError open mmCIF) created by
- […]
Jun 13, 2023:
- 7:28 PM Ticket #9181 (MemoryError open mmCIF) created by
- […]
- 7:11 PM Ticket #9180 (QTimer.start() requires integer argument) created by
- […]
- 4:08 PM Ticket #9179 ('GlobalColor' object is not iterable) closed by
- duplicate
- 4:06 PM Ticket #9177 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 2:39 PM Ticket #9179 ('GlobalColor' object is not iterable) created by
- […]
- 2:17 PM Dev2023-6-19 created by
- 2:15 PM 2023-6-15 created by
- 2:13 PM DeveloperMeetings edited by
- (diff)
- 1:51 PM Ticket #9178 (Accepting a new Toolshed bundle appears to hang with circling arrows icon) created by
- I logged in to the Toolshed and accepted a newly submitted bundle …
- 12:36 PM Ticket #9177 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:51 AM Ticket #9175 (NIH3D preset: unsupported operand type(s) for +=: 'set' and 'list') closed by
- fixed
- 10:43 AM Ticket #9176 (QColor: argument 1 has unexpected type 'numpy.float64') closed by
- duplicate: The user unfortunately has the build from the day before the fixes went in.
- 9:34 AM Ticket #9176 (QColor: argument 1 has unexpected type 'numpy.float64') created by
- […]
- 8:48 AM Ticket #9175 (NIH3D preset: unsupported operand type(s) for +=: 'set' and 'list') created by
- […]
- 8:25 AM Ticket #9140 (ISOLDE: OpenMMException: Error initializing context: clCreateContext) closed by
-
can't reproduce: -5 is
CL_OUT_OF_RESOURCES. Looks like a laptop with some weird … - 7:10 AM Ticket #9174 (Charge estimation test set) created by
- […] charge_failures.txt
- 6:11 AM Ticket #9173 (ISOLDE 1.6: OpenMMException: Error compiling kerne) created by
- […]
- 5:02 AM Ticket #9172 (Crash in event loop) created by
- […]
Jun 12, 2023:
- 4:28 PM Dev2023-6-12 edited by
- (diff)
- 2:27 PM Ticket #9171 (Can't iterate Qt.GlobalColor) closed by
- fixed
- 2:23 PM Ticket #9170 (SMILES needs escape-sequence insertion) closed by
- fixed: The SMILES code already did some bespoke quoting of the SMILES string …
- 12:26 PM Ticket #9164 (ESMFold sequence search web service failed) closed by
- fixed: Fixed. Had to update esmfold kmer search cgi script to use …
- 12:18 PM Ticket #9167 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash. Unfortunately Apple's Intel OpenGL …
- 12:08 PM Ticket #9162 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Graphics error after a long session of commands. On a dual GPU (Intel …
- 12:04 PM Dev2023-6-12 edited by
- (diff)
- 11:03 AM Ticket #9169 (Save mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Harris, Thanks for reporting this problem. It was fixed in …
- 10:42 AM Ticket #9171 (Can't iterate Qt.GlobalColor) created by
- […]
- 10:31 AM Ticket #9161 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 7:53 AM Ticket #9170 (SMILES needs escape-sequence insertion) created by
- […]
- 4:19 AM Ticket #9169 (Save mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
- 3:57 AM Ticket #9168 (ISOLDE: OpenMMException: Error compiling kernel) created by
- […]
- 3:38 AM Ticket #9167 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics) created by
- […]
Jun 11, 2023:
- 2:02 PM Ticket #9166 (combine: Tried to add model with the same id as another model) created by
- […]
- 5:04 AM Ticket #9165 (MemoryError opening mmCIF) created by
- […]
Jun 10, 2023:
- 12:22 PM Ticket #9160 (Error contacting toolshed for updates) closed by
- limitation: Sounds like you installed the generic Linux ChimeraX tarball. If so, …
- 11:22 AM Ticket #9164 (ESMFold sequence search web service failed) created by
- […]
- 7:55 AM Ticket #9163 (MemoryError opening mmCIF) created by
- […]
- 7:15 AM Ticket #9162 (glClear: invalid framebuffer operation) created by
- […]
Jun 9, 2023:
- 7:35 PM Ticket #9161 (Crash showing Rapid Access at startup) created by
- […]
- 4:57 PM ChangeLog edited by
- (diff)
- 4:54 PM Ticket #6703 (Chimera-like selection behavior for left/right arrow keys) closed by
- fixed: Made the left/right arrow keys invert the selection. This differs …
- 4:50 PM Ticket #9153 (PyQt no longer accepting previously acceptable arguments) closed by
- fixed: There were …
- 3:42 PM Ticket #9160 (Error contacting toolshed for updates) created by
- […]
- 2:50 PM Ticket #9159 (MemoryError open mmCIF) created by
- […]
- 12:31 PM Ticket #9158 (2dlabels arrow with bad args causes huge memory usage) created by
- I didn't know the limits on the 2dlabels arrow command are [0,1] for …
- 11:55 AM Ticket #9156 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:54 AM Ticket #9155 (Crash in garbage collection while importing networkx for alphafold pae) closed by
- can't reproduce: This isn't related to networkx or alphafold pae. The alphafold PAE …
- 11:48 AM Ticket #9152 (glClear: invalid operation) closed by
- nonchimerax: If ChimeraX fails to start every time then this is almost surely a …
- 11:03 AM Ticket #9154 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:34 AM Ticket #9157 (Daily build does not start on Mac) created by
- On my Intel Mac (12.6.6), clicking on the icon produces no window and …
- 10:10 AM Ticket #9156 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) created by
- […]
- 9:49 AM Ticket #9155 (Crash in garbage collection while importing networkx for alphafold pae) created by
- […]
- 9:29 AM Ticket #9149 (Show chain sequence: TypeError: __init__() got an unexpected keyword ...) closed by
- duplicate: Hi Jack, Thanks for reporting this problem. It was fixed about 5 …
- 6:15 AM Ticket #9154 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:07 AM Ticket #9153 (PyQt no longer accepting previously acceptable arguments) created by
- […]
- 2:44 AM Ticket #9152 (glClear: invalid operation) created by
- […]
Jun 8, 2023:
- 11:59 PM Ticket #9151 (KeyError handling AlphaFold predict Blast results) created by
- […]
- 10:19 PM Ticket #9150 (MemoryError open mmCIF) created by
- […]
- 9:38 PM Ticket #9149 (Show chain sequence: TypeError: __init__() got an unexpected keyword ...) created by
- […]
- 7:00 PM 2023-6-8 edited by
- (diff)
- 6:38 PM Ticket #9148 (Daily build Mac notarization failed after update to Python 3.11) closed by
- fixed: Fixed I think. I changed the notarize.py script to sign ".o" files …
- 5:56 PM Ticket #9148 (Daily build Mac notarization failed after update to Python 3.11) created by
- Notarization of the Mac arm, intel and universal daily builds failed …
- 3:52 PM 2023-6-8 edited by
- (diff)
- 3:09 PM Ticket #9146 (Crash at exit) closed by
- can't reproduce
- 3:07 PM Ticket #9145 (Hbonds: More than 2 coplanar positions specified) closed by
- can't reproduce
- 3:01 PM Ticket #9143 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) closed by
- can't reproduce: 1.3
- 1:59 PM NIAID2023 edited by
- (diff)
- 1:58 PM NIAID2023 edited by
- (diff)
- 12:51 PM Ticket #9147 (dicom view zooming should use zoom mousemode assignment) created by
- as discussed in the meeting today, it may be a good idea to make the …
- 8:28 AM Ticket #9146 (Crash at exit) created by
- […]
- 3:20 AM Ticket #9145 (Hbonds: More than 2 coplanar positions specified) created by
- […]
Jun 7, 2023:
- 11:27 PM Ticket #9144 (Crash in event loop) created by
- […]
- 4:04 PM Dev2023-6-12 edited by
- (diff)
- 3:03 PM Ticket #9143 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 1:45 PM ChangeLog edited by
- (diff)
- 1:44 PM ChangeLog edited by
- (diff)
- 11:05 AM Dev2023-6-12 edited by
- (diff)
- 9:34 AM Ticket #9142 (Running cx_unified.py standalone) closed by
- nonchimerax
- 9:08 AM Ticket #9139 (Re: [chimerax-users] ChimeraX not able to install for ubuntu22) closed by
- duplicate: Follow up to #9138
- 9:07 AM Ticket #9138 (ChimeraX not able to install for ubuntu22) closed by
- duplicate: Asked and answered on chimerax-users
- 8:08 AM Ticket #9142 (Running cx_unified.py standalone) created by
- […]
- 7:39 AM Ticket #9141 (Crash hiding tool) created by
- […]
- 5:38 AM Ticket #9140 (ISOLDE: OpenMMException: Error initializing context: clCreateContext) created by
- […]
- 3:14 AM Ticket #9139 (Re: [chimerax-users] ChimeraX not able to install for ubuntu22) created by
- […]
Jun 6, 2023:
- 8:57 PM Ticket #9138 (ChimeraX not able to install for ubuntu22) created by
- […] Screenshot from 2023-06-07 09-24-10.png
- 6:59 PM Ticket #9137 (MemoryError open mmCIF) created by
- […]
- 3:37 PM Ticket #9015 (Download DICOM: visual indicator in tool that loading is occurring) closed by
- fixed: Instead of putting that text in the status line, …
- 2:48 PM Ticket #9028 (Python311: Wayland required but PyOpenGL EGL backend gives bad background) closed by
- fixed: For the Python 3.11 update, we make PyOpenGL use its x11 backend to …
- 1:43 PM Ticket #9068 (qtconsole receives QContextMenuEvents when volume data context menu used) closed by
- fixed: Fixed. Worked around the Qt/PyQt bug by removing all references to …
- 12:50 PM Ticket #9135 (Volume histogram: cannot convert float NaN to integer) closed by
- nonchimerax: The HDF5 volume data file contained NaN values.
- 11:18 AM Ticket #2071 (Undockable settings; wider entry fields) closed by
- fixed: Preferences panel now undockable. Fix: …
- 11:02 AM Ticket #2939 (Iconify main window does not iconify other windows) closed by
- fixed: Has been fixed for awhile now.
- 10:47 AM Ticket #9134 (Crash in Windows Management Instrumentation module) closed by
- can't reproduce
- 10:45 AM Ticket #9133 (Crash in Windows Management Instrumentation module) closed by
- can't reproduce
- 10:16 AM Ticket #9131 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Mac with dual displays
- 10:04 AM Ticket #9136 (Can't login to Trac from Chrome on Windows) created by
- Begin forwarded message: From: Tristan Croll Subject: Re: Locked out …
- 10:01 AM Dev2023-6-12 created by
- 9:59 AM DeveloperMeetings edited by
- (diff)
- 9:58 AM 2023-6-8 created by
- 9:58 AM DeveloperMeetings edited by
- (diff)
- 8:10 AM Ticket #9127 (ISOLDE: a couple of errors) closed by
-
can't reproduce: The first exception is extremely perplexing - the "HIP"
Platformis … - 8:06 AM Ticket #9135 (Volume histogram: cannot convert float NaN to integer) created by
- […]
- 7:44 AM Ticket #9134 (Crash in Windows Management Instrumentation module) created by
- […]
- 7:44 AM Ticket #9133 (Crash in Windows Management Instrumentation module) created by
- […]
- 6:34 AM Ticket #9115 (ISOLDE: various problems) closed by
- fixed: Fixed in the 1.6 release. The OpenMM 8.0.0beta used in the dev builds …
Jun 5, 2023:
- 10:49 PM Ticket #9132 (MemoryError open mmCIF) created by
- […]
- 5:20 PM Ticket #9119 (Add CSV export to blastprotein table) closed by
- fixed: I've implemented TSV support instead, because a lot of the values that …
- 4:18 PM Dev2022-6-5 edited by
- (diff)
- 4:16 PM Dev2022-6-5 edited by
- (diff)
- 4:08 PM Ticket #9131 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:31 PM Ticket #9129 (Crash adding bond in AddH) closed by
- can't reproduce
- 2:30 PM Ticket #9130 (Early "Drill down to studies" crashes) created by
- […]
- 2:18 PM Ticket #9129 (Crash adding bond in AddH) created by
- […]
- 11:59 AM Ticket #9128 (Allow naming AlphaFold prediction model when job is started) created by
- On Jun 5, 2023, at 11:51 AM, James Raymond wrote: Thank you. I am …
- 11:51 AM Dev2022-6-5 edited by
- (diff)
- 11:47 AM Ticket #9123 (glClear: invalid framebuffer operation) closed by
- duplicate: Duplicate of #9122.
- 11:46 AM Ticket #9122 (glClear: invalid framebuffer operation) closed by
- nonchimerax: Looks like an Apple Intel graphics problem, on macOS 12.6.5 released …
- 11:29 AM Ticket #9126 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:27 AM Ticket #9125 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:22 AM Ticket #9124 (Crash handling text input) closed by
- can't reproduce
- 12:46 AM Ticket #9127 (ISOLDE: a couple of errors) created by
- […]
Jun 4, 2023:
Jun 3, 2023:
- 7:25 AM Ticket #9125 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:57 AM Ticket #9124 (Crash handling text input) created by
- […]
Jun 2, 2023:
- 9:18 PM Ticket #9123 (glClear: invalid framebuffer operation) created by
- […]
- 9:18 PM Ticket #9122 (glClear: invalid framebuffer operation) created by
- […]
- 6:01 PM Ticket #9121 (test) closed by
- not a bug
- 6:00 PM Ticket #9121 (test) created by
- […]
- 5:56 PM Ticket #9066 (Tickets made with email2trac do not produce a new ticket email from ...) closed by
- fixed
- 5:46 PM Ticket #9120 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 4:22 PM Ticket #9120 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:47 PM Ticket #9119 (Add CSV export to blastprotein table) created by
- 1:43 PM Ticket #8992 (TCIA DICOM has empty axes) closed by
- fixed: Missed a path through the DICOM code where an empty axis could be …
- 11:24 AM Ticket #9108 (Show map when showing Model) closed by
- not a bug: That works. Unfortunately allow hierarchies of models where models at …
- 11:09 AM Ticket #9110 (Hiding/showing model changes lighting) closed by
- limitation: You are using the "soft" lighting mode which approximates ambient …
- 10:43 AM Ticket #9118 (QOpenGLContext::makeCurrent() called with non-opengl surface) closed by
- nonchimerax: Looks like a graphics driver problem. Appears that Qt can't use OpenGL.
- 10:24 AM Ticket #9117 (Chain not in match maps) closed by
- can't reproduce: Would need the session file.
- 10:19 AM Ticket #9111 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: "Qt fatal error: Failed to initialize graphics backend for OpenGL." …
- 9:43 AM Ticket #9116 (Crash in QFileDialog.__init__) closed by
- can't reproduce
- 9:33 AM Ticket #9114 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 8:51 AM Ticket #9118 (QOpenGLContext::makeCurrent() called with non-opengl surface) created by
- […]
- 8:39 AM Ticket #9117 (Chain not in match maps) created by
- […]
- 6:35 AM Ticket #9116 (Crash in QFileDialog.__init__) created by
- […]
- 1:15 AM Ticket #9115 (ISOLDE: various problems) created by
- […]
- 12:17 AM Ticket #9114 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jun 1, 2023:
- 9:51 PM Ticket #9113 (MemoryError open mmCIF) created by
- […] 2bbv.cif
- 9:18 PM Ticket #9112 (Crash at startup) created by
- […]
- 7:10 PM Ticket #9111 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:21 PM Ticket #9110 (Hiding/showing model changes lighting) created by
- […] [attachment:"2023-06-01 bug report session ponatinib and …
- 4:45 PM ChangeLog edited by
- (diff)
- 12:34 PM Ticket #9109 (Unknown crash) closed by
- can't reproduce
- 12:24 PM 2023-6-1 edited by
- (diff)
- 9:57 AM Ticket #9109 (Unknown crash) created by
- […]
- 8:27 AM Ticket #9108 (Show map when showing Model) created by
- […]
May 31, 2023:
- 4:51 PM phenix-6-1-23 edited by
- (diff)
- 2:14 PM phenix-6-1-23 edited by
- (diff)
- 2:14 PM phenix-6-1-23 edited by
- (diff)
- 2:05 PM phenix-6-1-23 edited by
- (diff)
- 1:58 PM phenix-6-1-23 edited by
- (diff)
- 1:39 PM Ticket #9107 (ISOLDE unparameterized validation tab: 'NoneType' object has no ...) created by
- […]
- 1:37 PM phenix-6-1-23 created by
- 1:37 PM Features edited by
- (diff)
- 1:12 PM Ticket #9105 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 12:13 PM Ticket #9106 (Crash opening mmCIF) created by
- […]
- 11:46 AM Ticket #9105 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 10:54 AM Ticket #9104 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) closed by
- duplicate: This error was fixed more than a year ago. Get the current ChimeraX …
- 10:21 AM Ticket #9104 (Volume Viewer: wrapped C/C++ object of type QScrollArea has been deleted) created by
- […]
- 9:51 AM Ticket #9103 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 9:49 AM Ticket #9102 (Crash in event loop) closed by
- can't reproduce
- 9:44 AM Ticket #9101 (Error restoring session) closed by
- can't reproduce
- 9:41 AM Ticket #9100 (Crash in event loop) closed by
- can't reproduce
- 9:37 AM Ticket #9099 (Unknown crash) closed by
- can't reproduce
- 9:07 AM Ticket #9103 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:42 AM Ticket #9102 (Crash in event loop) created by
- […]
- 1:38 AM Ticket #9101 (Error restoring session) created by
- […]
- 12:07 AM Ticket #9100 (Crash in event loop) created by
- […]
May 30, 2023:
- 9:01 PM Ticket #9099 (Unknown crash) created by
- […]
- 1:28 PM Ticket #9092 (MemoryError saving maps in sessions) closed by
- fixed: Fixed. Add clear error message when out of memory saving session …
- 1:18 PM Ticket #9098 (MemoryError open mmCIF) closed by
- duplicate
- 12:42 PM Ticket #9069 (fitmap: mismatch coordinate array sizes) closed by
- fixed: Fixed. User fit atoms into a map with moveWholeMolecules false, then …
- 12:42 PM Ticket #9098 (MemoryError open mmCIF) created by
- […]
- 12:11 PM Ticket #9097 (Download DICOM: impatiently clicking "Drill down" twice crashes ChimeraX) created by
- Could be considered "user error" I guess, so reclassify as you see …
- 11:48 AM Ticket #9079 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:46 AM Ticket #9078 (AlphaFold sequence search web service failed (500) "Internal Server Error") closed by
- fixed: Fixed. Thanks for reporting the problem. The AlphaFold search …
- 11:20 AM 2023-5-25 edited by
- (diff)
- 11:06 AM Dev2022-6-5 created by
- 11:05 AM 2023-6-1 created by
- 11:04 AM DeveloperMeetings edited by
- (diff)
- 10:54 AM Ticket #9096 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Dual displays
- 10:20 AM Ticket #9070 (Blast: self.job.model_name is None) closed by
- fixed: It's harmless if this line fails and the try... block around it …
- 9:42 AM Ticket #9094 (Crash drawing QTabBar) closed by
- can't reproduce
- 9:37 AM Ticket #9093 (Unknown crash) closed by
- can't reproduce
- 9:31 AM Ticket #9091 (Crash handling text input) closed by
- can't reproduce
- 9:22 AM Ticket #9089 (Unknown crash) closed by
- can't reproduce
- 9:21 AM Ticket #9088 (Unknown crash) closed by
- can't reproduce
- 9:19 AM Ticket #9087 (Unknown crash) closed by
- can't reproduce
- 9:09 AM Ticket #9086 (Session restore: invalid load key) closed by
- duplicate
- 9:08 AM Ticket #9085 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:07 AM Ticket #9084 (Session restore: invalid load key) closed by
- duplicate
- 9:06 AM Ticket #9083 (Session restore: invalid load key) closed by
- duplicate
- 9:04 AM Ticket #9082 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:55 AM Ticket #9081 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:53 AM Ticket #9080 (Crash creating QWebEngineProfile at startup) closed by
- duplicate
- 8:44 AM Ticket #9075 (Some kind of crash handling text input) closed by
- can't reproduce
- 8:32 AM Ticket #9073 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 8:26 AM Ticket #9071 (Unknown crash) closed by
- can't reproduce
- 6:52 AM Ticket #9096 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:51 AM Ticket #9095 (XMAS: crash in ~QGridLayout()) created by
- […]
- 3:39 AM Ticket #9094 (Crash drawing QTabBar) created by
- […]
May 29, 2023:
- 11:31 PM Ticket #9093 (Unknown crash) created by
- […]
- 7:34 PM Ticket #9092 (MemoryError saving maps in sessions) created by
- […]
- 1:15 PM Ticket #9091 (Crash handling text input) created by
- […]
- 11:19 AM Ticket #9090 (Unable to restore "SchemesManager" object) created by
- […]
- 4:05 AM Ticket #9089 (Unknown crash) created by
- […]
May 28, 2023:
- 10:19 PM Ticket #9088 (Unknown crash) created by
- […]
- 10:17 PM Ticket #9087 (Unknown crash) created by
- […]
- 7:41 AM Ticket #9086 (Session restore: invalid load key) created by
- […]
- 7:28 AM Ticket #9085 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:27 AM Ticket #9084 (Session restore: invalid load key) created by
- […]
- 7:25 AM Ticket #9083 (Session restore: invalid load key) created by
- […]
- 12:35 AM Ticket #9082 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:04 AM Ticket #9081 (Crash using File→Open on Windows and/or in return statement) created by
- […]
May 27, 2023:
- 4:55 PM Ticket #9080 (Crash creating QWebEngineProfile at startup) created by
- […]
- 4:54 PM Ticket #9079 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 645) created by
- […]
- 4:07 PM Ticket #9078 (AlphaFold sequence search web service failed (500) "Internal Server Error") created by
- […]
May 26, 2023:
- 6:15 PM Ticket #9077 (Port volume filter user interface from Chimera) closed by
- fixed: Done. I called the new tool "Map Filter" instead of "Volume Filter". …
- 6:12 PM Ticket #9077 (Port volume filter user interface from Chimera) created by
- Mike mentioned in the May 19, 2023 SLAC cryoEM workshop that the …
- 3:57 PM Ticket #9076 (volume gaussian filtering sometimes causes 0.5 voxel shift) closed by
- fixed: Fixed. Problem was the array for the 1D Gaussian usually had a even …
- 2:30 PM ChangeLog edited by
- (diff)
- 2:07 PM Ticket #9076 (volume gaussian filtering sometimes causes 0.5 voxel shift) created by
- […]
- 12:01 PM Ticket #9075 (Some kind of crash handling text input) created by
- […]
- 10:50 AM Ticket #9074 (ChimeraX bug report submission) closed by
- duplicate: Duplicate of #9068
- 10:47 AM Ticket #9074 (ChimeraX bug report submission) created by
- […]
- 10:47 AM Ticket #9073 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 10:47 AM Ticket #9072 (Cannot load symbols from atomic library) created by
- […]
- 10:47 AM Ticket #9071 (Unknown crash) created by
- […]
- 10:47 AM Ticket #9070 (Blast: self.job.model_name is None) created by
- […]
- 10:47 AM Ticket #9069 (fitmap: mismatch coordinate array sizes) created by
- […]
- 9:40 AM Ticket #9068 (qtconsole receives QContextMenuEvents when volume data context menu used) created by
- To reproduce: Open one of the RIDER Lung CTs (I used series 8), …
May 25, 2023:
- 7:11 PM Ticket #9067 (ChimeraX bug report submission) closed by
- nonchimerax
- 7:09 PM Ticket #9067 (ChimeraX bug report submission) created by
- […]
- 6:52 PM Ticket #9066 (Tickets made with email2trac do not produce a new ticket email from ...) created by
- When a bug is submitted using ChimeraX Report a Bug or by emailing …
- 6:47 PM Ticket #9065 (email2trac does not include description when reporter is notified) created by
- With the new email2trac updated in the past week new tickets submitted …
- 6:42 PM Ticket #9064 (ChimeraX bug report submission) closed by
- nonchimerax
- 6:38 PM Ticket #9064 (ChimeraX bug report submission) created by
- […] neuron.png
- 6:36 PM Ticket #9063 (Test of Trac email) closed by
- not a bug
- 6:35 PM Ticket #9061 (Checking Trac email) closed by
- not a bug
- 6:32 PM Ticket #9060 (Test Trac email to reporter) closed by
- not a bug
- 6:23 PM Ticket #9062 (ChimeraX bug report submission) closed by
- not a bug
- 6:22 PM Ticket #9059 (ChimeraX bug report submission) closed by
- not a bug
- 6:22 PM Ticket #9063 (Test of Trac email) created by
- […]
- 6:22 PM Ticket #9056 (ChimeraX bug report submission) closed by
- not a bug
- 6:20 PM Ticket #9062 (ChimeraX bug report submission) created by
- […]
- 6:16 PM Ticket #9061 (Checking Trac email) created by
- […]
- 5:58 PM Ticket #9060 (Test Trac email to reporter) created by
- See if Trac email to reporter includes the description field when I …
- 5:26 PM Ticket #9059 (ChimeraX bug report submission) created by
- […]
- 5:19 PM Ticket #9058 (ChimeraX bug report submission) closed by
- not a bug
- 5:18 PM Ticket #9058 (ChimeraX bug report submission) created by
- […]
- 5:17 PM Ticket #9057 (ChimeraX bug report submission) closed by
- not a bug
- 5:14 PM Ticket #9057 (ChimeraX bug report submission) created by
- […]
- 5:06 PM Ticket #9056 (ChimeraX bug report submission) created by
- […]
- 5:02 PM Ticket #9053 (ChimeraX bug report submission) closed by
- not a bug
- 5:02 PM Ticket #9055 (ChimeraX bug report submission) closed by
- not a bug
- 5:01 PM Ticket #9054 (ChimeraX bug report submission) closed by
- not a bug
- 4:56 PM Ticket #9055 (ChimeraX bug report submission) created by
- […]
- 4:54 PM Ticket #9054 (ChimeraX bug report submission) created by
- […]
- 4:40 PM Ticket #9053 (ChimeraX bug report submission) created by
- […]
- 3:36 PM WebJobInfo edited by
- (diff)
- 3:23 PM WebJobInfo edited by
- (diff)
- 3:23 PM WebJobInfo edited by
- (diff)
- 3:23 PM WebJobInfo edited by
- (diff)
- 2:32 PM Ticket #9052 (test bug) closed by
- fixed
- 2:31 PM Ticket #9052 (test bug) created by
- […]
- 2:03 PM NIAID2023 edited by
- (diff)
- 1:35 PM NIAID2023 edited by
- (diff)
- 12:55 PM NIAID2023 edited by
- (diff)
- 10:33 AM Ticket #9039 (Problem assigning attributes) closed by
- fixed: That's great news! --Eric Since run_email2trac isn't working, …
Note:
See TracTimeline
for information about the timeline view.
