MatchMaker: 'NoneType' object has no attribute 'setChecked'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Your computer has Intel graphics driver 7756 with a known bug that
causes all Qt user interface panels to be blank. ChimeraX can partially fix
this but may make some panel titlebars and edges black. Hopefully newer Intel
graphics drivers will fix this.  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Updating list of available bundles failed: Internal Server Error  

> open "C:/Users/Bijan/Desktop/AT/DTE-NDI-Quinoline_June
> 2023/b3lyp-d3-def2svp/original-new/open/C64N10H66S2O5F6-open.xyz" format xyz

Install the SEQCROW bundle to open "XYZ trajectory file" format files.  
Opener for format 'XYZ trajectory file' is not installed; see log for more
info  

> open "C:/Users/Bijan/Desktop/AT/DTE-NDI-Quinoline_June
> 2023/b3lyp-d3-def2svp/original-new/open/C64N10H66S2O5F6-open.xyz"

Install the SEQCROW bundle to open "XYZ file" format files.  
Opener for format 'XYZ file' is not installed; see log for more info  

> open "C:/Users/Bijan/Desktop/AT/DTE-NDI-Quinoline_June
> 2023/b3lyp-d3-def2svp/original-new/open/mo/Open-DTE-NDI-quinoline.pbs"

Unrecognized file suffix '.pbs'  

> open "C:/Users/Bijan/Desktop/AT/DTE-NDI-Quinoline_June
> 2023/b3lyp-d3-def2svp/original-new/open/opt/Open-DTE-NDI-quinoline.pdb"

Open-DTE-NDI-quinoline.pdb title:  
Open-DTE-NDI-quinoline B3LYP-D3/def2svp gas phase [more info...]  
  
Non-standard residues in Open-DTE-NDI-quinoline.pdb #1  
---  
— ()  
  

> open "C:/Users/Bijan/Desktop/AT/DTE-NDI-Quinoline_June
> 2023/b3lyp-d3-def2svp/original-new/closed/mo/Open-DTE-NDI-quinoline.pdb"

Open-DTE-NDI-quinoline.pdb title:  
DTE-NDI-quinoline B3LYP-D3/def2svp gas phase closed--MO [more info...]  
  
Non-standard residues in Open-DTE-NDI-quinoline.pdb #2  
---  
— ()  
  

> ui tool show "Volume Viewer"

> ui tool show Matchmaker

> matchmaker #2 to #1

Reference and/or match model contains no nucleic or amino acid chains.  
Use the command-line 'align' command to superimpose small molecules/ligands.  

> toolshed show

> set bgColor white

> style stick

Changed 306 atom styles  

> style ball

Changed 306 atom styles  

> style sphere

Changed 306 atom styles  

> style ball

Changed 306 atom styles  

> style stick

Changed 306 atom styles  

> style ball

Changed 306 atom styles  

> color #1 blue transparency 0

> color #2 #aa0000 transparency 0

> color #1 #005500 transparency 0

> select add #1

153 atoms, 163 bonds, 1 residue, 1 model selected  

> select subtract #1

Nothing selected  

> select add #1

153 atoms, 163 bonds, 1 residue, 1 model selected  

> select add #2

306 atoms, 327 bonds, 2 residues, 2 models selected  

> hide #1 models

> show #1 models

> ui tool show Matchmaker

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 341, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 341, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 341, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'setChecked'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 341, in set_value  
self.__button_group.button(self.values.index(value)).setChecked(True)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\options\options.py", line 51, in <lambda>  
or (pself._callback and pself._callback(pself))))  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 367, in _pairing_change  
self.bring_model_list.refresh()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 66, in refresh  
self._items_change()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 163, in _items_change  
item_names = self._item_names()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in _item_names  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in <listcomp>  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 22, in <lambda>  
filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and
isinstance(x, cf)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
Error processing trigger "setting changed":  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 66, in refresh  
self._items_change()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 163, in _items_change  
item_names = self._item_names()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in _item_names  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in <listcomp>  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 22, in <lambda>  
filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and
isinstance(x, cf)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
  
See log for complete Python traceback.  
  

> ui tool show "Altloc Explorer"

> ui tool show Matchmaker

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 559, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1266, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\\__init__.py", line 33, in start_tool  
return MatchMakerTool(session, tool_name)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 176, in __init__  
self._pairing_change(cp_opt)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 367, in _pairing_change  
self.bring_model_list.refresh()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 66, in refresh  
self._items_change()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 163, in _items_change  
item_names = self._item_names()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in _item_names  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in <listcomp>  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 22, in <lambda>  
filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and
isinstance(x, cf)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-packages\chimerax\ui\gui.py",
line 1685, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-packages\chimerax\ui\cmd.py",
line 219, in ui_tool_show  
bi.start_tool(session, name)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 564, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Matchmaker
in bundle ChimeraX-MatchMaker:  
'NoneType' object has no attribute 'structure'  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Matchmaker
in bundle ChimeraX-MatchMaker:  
'NoneType' object has no attribute 'structure'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 564, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 66, in refresh  
self._items_change()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 163, in _items_change  
item_names = self._item_names()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in _item_names  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in <listcomp>  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 22, in <lambda>  
filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and
isinstance(x, cf)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
  
See log for complete Python traceback.  
  

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> ui tool show "Unit Cell"

> log metadata #1-2

Metadata for Open-DTE-NDI-quinoline.pdb #1  
---  
Title | Open-DTE-NDI-quinoline B3LYP-D3/def2svp gas phase  
Non-standard residue |  — ()  
Metadata for Open-DTE-NDI-quinoline.pdb #2  
---  
Title | DTE-NDI-quinoline B3LYP-D3/def2svp gas phase closed--MO  
Non-standard residue |  — ()  
  
> log chains #1-2

> ui tool show "Volume Viewer"

> toolshed show

> ui tool show Contacts

> contacts ignoreHiddenModels true

1093 contacts  

> ui tool show Matchmaker

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 66, in refresh  
self._items_change()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 163, in _items_change  
item_names = self._item_names()  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in _item_names  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 41, in <listcomp>  
values = [v for v in self.list_func() if self.filter_func(v)]  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 22, in <lambda>  
filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and
isinstance(x, cf)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
AttributeError: 'NoneType' object has no attribute 'structure'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\match_maker\tool.py", line 312, in _filter_bring_models  
ref_structures = [ref_value.structure]  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 26.20.100.7756
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel

Python: 3.9.11
Locale: de_DE.cp1252
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: windows

Manufacturer: HP
Model: HP EliteBook 850 G6
OS: Microsoft Windows 10 Education (Build 19045)
Memory: 8,386,813,952
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-8265U CPU @ 1.60GHz
OSLanguage: de-DE

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2022.5.18.1
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1