![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9230 closed defect (can't reproduce)
Crash gathering atomic session info
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [41219]
Path: /Applications/ChimeraX-1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.0 (1.1.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [41219]
User ID: 501
Date/Time: 2023-06-21 15:48:28.243 -0700
OS Version: Mac OS X 10.14.6 (18G9323)
Report Version: 12
Anonymous UUID: F24801D6-C783-D0EB-FE81-23671F61C372
Sleep/Wake UUID: 8B87BB70-BCA8-449F-8C87-FF46D1435A78
Time Awake Since Boot: 530000 seconds
Time Since Wake: 18000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 0000000103e0a000-0000000103e0b000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5d1b82c2 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5d273bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff5d0d5d8a raise + 26
3 libsystem_platform.dylib 0x00007fff5d268b5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x0000000103e7f9a0 tupletraverse + 64
6 org.python.python 0x0000000103f659b3 collect + 2083
7 org.python.python 0x0000000103f6615e _PyObject_GC_Alloc + 286
8 org.python.python 0x0000000103f66234 _PyObject_GC_New + 20
9 org.python.python 0x0000000103e4d920 PyList_New + 96
10 libatomstruct.dylib 0x000000011c17a38b atomstruct::Structure::session_info(_object*, _object*, _object*) const + 1419
11 libmolc.dylib 0x000000011c0aaccb structure_session_info + 11
12 _ctypes.cpython-37m-darwin.so 0x000000010b73ee17 ffi_call_unix64 + 79
13 _ctypes.cpython-37m-darwin.so 0x000000010b73f6a5 ffi_call + 901
14 _ctypes.cpython-37m-darwin.so 0x000000010b739f62 _ctypes_callproc + 882
15 _ctypes.cpython-37m-darwin.so 0x000000010b7336dc PyCFuncPtr_call + 1196
16 org.python.python 0x0000000103e346ff _PyObject_FastCallKeywords + 575
17 org.python.python 0x0000000103f09bdd call_function + 765
18 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
19 org.python.python 0x0000000103e34d81 function_code_fastcall + 177
20 org.python.python 0x0000000103f09be4 call_function + 772
21 org.python.python 0x0000000103f06827 _PyEval_EvalFrameDefault + 26567
22 org.python.python 0x0000000103e34d81 function_code_fastcall + 177
23 org.python.python 0x0000000103f09be4 call_function + 772
24 org.python.python 0x0000000103f06827 _PyEval_EvalFrameDefault + 26567
25 org.python.python 0x0000000103e34d81 function_code_fastcall + 177
26 org.python.python 0x0000000103f09be4 call_function + 772
27 org.python.python 0x0000000103f06827 _PyEval_EvalFrameDefault + 26567
28 org.python.python 0x0000000103e34d81 function_code_fastcall + 177
29 org.python.python 0x0000000103f09be4 call_function + 772
30 org.python.python 0x0000000103f0680a _PyEval_EvalFrameDefault + 26538
31 org.python.python 0x0000000103e34d81 function_code_fastcall + 177
32 org.python.python 0x0000000103f09be4 call_function + 772
33 org.python.python 0x0000000103f0680a _PyEval_EvalFrameDefault + 26538
34 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
35 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
36 org.python.python 0x0000000103f09be4 call_function + 772
37 org.python.python 0x0000000103f005d4 _PyEval_EvalFrameDefault + 1396
38 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
39 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
40 org.python.python 0x0000000103f06a4a _PyEval_EvalFrameDefault + 27114
41 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
42 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
43 org.python.python 0x0000000103e35893 _PyObject_Call_Prepend + 131
44 org.python.python 0x0000000103e349f8 PyObject_Call + 136
45 org.python.python 0x0000000103f06a4a _PyEval_EvalFrameDefault + 27114
46 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
47 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
48 org.python.python 0x0000000103f06a4a _PyEval_EvalFrameDefault + 27114
49 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
50 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
51 org.python.python 0x0000000103f09be4 call_function + 772
52 org.python.python 0x0000000103f005d4 _PyEval_EvalFrameDefault + 1396
53 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
54 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
55 org.python.python 0x0000000103f06a4a _PyEval_EvalFrameDefault + 27114
56 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
57 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
58 org.python.python 0x0000000103f09be4 call_function + 772
59 org.python.python 0x0000000103f005d4 _PyEval_EvalFrameDefault + 1396
60 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
61 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
62 org.python.python 0x0000000103f09be4 call_function + 772
63 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
64 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
65 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
66 org.python.python 0x0000000103e35893 _PyObject_Call_Prepend + 131
67 org.python.python 0x0000000103e349f8 PyObject_Call + 136
68 org.python.python 0x0000000103f06a4a _PyEval_EvalFrameDefault + 27114
69 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
70 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
71 org.python.python 0x0000000103f09be4 call_function + 772
72 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
73 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
74 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
75 org.python.python 0x0000000103f09be4 call_function + 772
76 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
77 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
78 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
79 QtCore.so 0x000000010e378f17 PyQtSlot::call(_object*, _object*) const + 39
80 QtCore.so 0x000000010e378e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
81 QtCore.so 0x000000010e379925 PyQtSlotProxy::unislot(void**) + 85
82 QtCore.so 0x000000010e37989a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
83 QtCore 0x000000010de4b13d QMetaObject::activate(QObject*, int, int, void**) + 1773
84 QtWidgets 0x000000010d125075 QAction::activate(QAction::ActionEvent) + 309
85 QtCore 0x000000010de43d41 QObject::event(QEvent*) + 753
86 QtWidgets.so 0x000000010ccef810 sipQAction::event(QEvent*) + 192
87 QtWidgets 0x000000010d12e67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
88 QtWidgets 0x000000010d12fa82 QApplication::notify(QObject*, QEvent*) + 594
89 QtWidgets.so 0x000000010ccee3ca sipQApplication::notify(QObject*, QEvent*) + 234
90 QtCore 0x000000010de1a324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
91 QtCore 0x000000010de1b55e QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 878
92 libqcocoa.dylib 0x0000000117b9b8f9 0x117b65000 + 223481
93 libqcocoa.dylib 0x0000000117b9c068 0x117b65000 + 225384
94 com.apple.CoreFoundation 0x00007fff30fab39b __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
95 com.apple.CoreFoundation 0x00007fff30fab341 __CFRunLoopDoSource0 + 108
96 com.apple.CoreFoundation 0x00007fff30f8ec0b __CFRunLoopDoSources0 + 195
97 com.apple.CoreFoundation 0x00007fff30f8e1d5 __CFRunLoopRun + 1189
98 com.apple.CoreFoundation 0x00007fff30f8dade CFRunLoopRunSpecific + 455
99 com.apple.HIToolbox 0x00007fff301ec1ab RunCurrentEventLoopInMode + 292
100 com.apple.HIToolbox 0x00007fff301ebded ReceiveNextEventCommon + 355
101 com.apple.HIToolbox 0x00007fff301ebc76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
102 com.apple.AppKit 0x00007fff2e583e89 _DPSNextEvent + 1135
103 com.apple.AppKit 0x00007fff2e582b77 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
104 com.apple.AppKit 0x00007fff2e57cc94 -[NSApplication run] + 699
105 libqcocoa.dylib 0x0000000117b9ade3 0x117b65000 + 220643
106 QtCore 0x000000010de1593f QEventLoop::exec(QFlags) + 431
107 QtCore 0x000000010de1a932 QCoreApplication::exec() + 130
108 QtWidgets.so 0x000000010cddd7d2 meth_QApplication_exec_(_object*, _object*) + 82
109 org.python.python 0x0000000103e353a2 _PyMethodDef_RawFastCallKeywords + 226
110 org.python.python 0x0000000103e348d9 _PyCFunction_FastCallKeywords + 41
111 org.python.python 0x0000000103f09b70 call_function + 656
112 org.python.python 0x0000000103f06827 _PyEval_EvalFrameDefault + 26567
113 org.python.python 0x0000000103e34d81 function_code_fastcall + 177
114 org.python.python 0x0000000103f09be4 call_function + 772
115 org.python.python 0x0000000103f06827 _PyEval_EvalFrameDefault + 26567
116 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
117 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
118 org.python.python 0x0000000103f09be4 call_function + 772
119 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
120 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
121 org.python.python 0x0000000103efffc0 PyEval_EvalCode + 48
122 org.python.python 0x0000000103efd557 builtin_exec + 583
123 org.python.python 0x0000000103e3554d _PyMethodDef_RawFastCallKeywords + 653
124 org.python.python 0x0000000103e348d9 _PyCFunction_FastCallKeywords + 41
125 org.python.python 0x0000000103f09b70 call_function + 656
126 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
127 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
128 org.python.python 0x0000000103e34899 _PyFunction_FastCallKeywords + 217
129 org.python.python 0x0000000103f09be4 call_function + 772
130 org.python.python 0x0000000103f068be _PyEval_EvalFrameDefault + 26718
131 org.python.python 0x0000000103f0aa3c _PyEval_EvalCodeWithName + 3276
132 org.python.python 0x0000000103e34397 _PyFunction_FastCallDict + 455
133 org.python.python 0x0000000103f64b03 pymain_run_module + 147
134 org.python.python 0x0000000103f63bec pymain_main + 5900
135 org.python.python 0x0000000103f624d3 Py_Main + 51
136 edu.ucsf.cgl.ChimeraX 0x0000000103e0adc8 main + 120
137 libdyld.dylib 0x00007fff5d07d3d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5d1b5866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5d27456e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x0000000105948c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff30f8ee0e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff30f8e37c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff30f8dade CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff2e58bbae _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e722f 0x10f345000 + 35267119
4 QtWebEngineCore 0x000000011149b05d 0x10f345000 + 34955357
5 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
6 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5d1b878a kevent + 10
1 QtWebEngineCore 0x00000001117a89a9 0x10f345000 + 38156713
2 QtWebEngineCore 0x00000001117a5cbd 0x10f345000 + 38145213
3 QtWebEngineCore 0x000000011155ccdc 0x10f345000 + 35749084
4 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
5 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
6 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff5d1b878a kevent + 10
1 QtWebEngineCore 0x00000001117a89a9 0x10f345000 + 38156713
2 QtWebEngineCore 0x00000001117a5cbd 0x10f345000 + 38145213
3 QtWebEngineCore 0x000000011155ccc4 0x10f345000 + 35749060
4 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
5 QtWebEngineCore 0x0000000111505a74 0x10f345000 + 35392116
6 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 6:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e7421 0x10f345000 + 35267617
4 QtWebEngineCore 0x00000001114fed28 0x10f345000 + 35364136
5 QtWebEngineCore 0x00000001114ff65b 0x10f345000 + 35366491
6 QtWebEngineCore 0x00000001114ff2c4 0x10f345000 + 35365572
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e7421 0x10f345000 + 35267617
4 QtWebEngineCore 0x00000001114fed28 0x10f345000 + 35364136
5 QtWebEngineCore 0x00000001114ff65b 0x10f345000 + 35366491
6 QtWebEngineCore 0x00000001114ff2c4 0x10f345000 + 35365572
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 8:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e7421 0x10f345000 + 35267617
4 QtWebEngineCore 0x00000001114fed28 0x10f345000 + 35364136
5 QtWebEngineCore 0x00000001114ff65b 0x10f345000 + 35366491
6 QtWebEngineCore 0x00000001114ff234 0x10f345000 + 35365428
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5d1b878a kevent + 10
1 QtWebEngineCore 0x00000001117a89a9 0x10f345000 + 38156713
2 QtWebEngineCore 0x00000001117a5cbd 0x10f345000 + 38145213
3 QtWebEngineCore 0x000000011155ccc4 0x10f345000 + 35749060
4 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
5 QtWebEngineCore 0x0000000110e32fe4 0x10f345000 + 28237796
6 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 10:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e722f 0x10f345000 + 35267119
4 QtWebEngineCore 0x00000001114fed1a 0x10f345000 + 35364122
5 QtWebEngineCore 0x00000001114ff3bf 0x10f345000 + 35365823
6 QtWebEngineCore 0x00000001114ff264 0x10f345000 + 35365476
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 11:: CompositorTileWorker1/75523
0 libsystem_kernel.dylib 0x00007fff5d1b5866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5d27456e _pthread_cond_wait + 722
2 QtWebEngineCore 0x0000000111554fa8 0x10f345000 + 35717032
3 QtWebEngineCore 0x00000001124db4c8 0x10f345000 + 51995848
4 QtWebEngineCore 0x0000000111515694 0x10f345000 + 35456660
5 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
6 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 12:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e722f 0x10f345000 + 35267119
4 QtWebEngineCore 0x000000011149b05d 0x10f345000 + 34955357
5 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
6 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e722f 0x10f345000 + 35267119
4 QtWebEngineCore 0x000000011149b05d 0x10f345000 + 34955357
5 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
6 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x000000011149b052 0x10f345000 + 34955346
4 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
5 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
6 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5d1b878a kevent + 10
1 QtWebEngineCore 0x00000001117a89a9 0x10f345000 + 38156713
2 QtWebEngineCore 0x00000001117a5cbd 0x10f345000 + 38145213
3 QtWebEngineCore 0x000000011155ccdc 0x10f345000 + 35749084
4 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
5 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
6 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 16:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e722f 0x10f345000 + 35267119
4 QtWebEngineCore 0x00000001114fed1a 0x10f345000 + 35364122
5 QtWebEngineCore 0x00000001114ff65b 0x10f345000 + 35366491
6 QtWebEngineCore 0x00000001114ff324 0x10f345000 + 35365668
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e722f 0x10f345000 + 35267119
4 QtWebEngineCore 0x000000011149b05d 0x10f345000 + 34955357
5 QtWebEngineCore 0x00000001114c4085 0x10f345000 + 35123333
6 QtWebEngineCore 0x00000001115169bc 0x10f345000 + 35461564
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 18:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5d1b221a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d1b2768 mach_msg + 60
2 QtWebEngineCore 0x00000001114e732d 0x10f345000 + 35267373
3 QtWebEngineCore 0x00000001114e7421 0x10f345000 + 35267617
4 QtWebEngineCore 0x00000001114fed28 0x10f345000 + 35364136
5 QtWebEngineCore 0x00000001114ff65b 0x10f345000 + 35366491
6 QtWebEngineCore 0x00000001114ff234 0x10f345000 + 35365428
7 QtWebEngineCore 0x0000000111556717 0x10f345000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 19:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5d1b5866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5d27456e _pthread_cond_wait + 722
2 QtCore 0x000000010dc5a8ab 0x10dc30000 + 174251
3 QtCore 0x000000010dc5a80c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000010d359762 0x10d11e000 + 2340706
5 QtCore 0x000000010dc520b3 0x10dc30000 + 139443
6 libsystem_pthread.dylib 0x00007fff5d2712eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5d274249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5d27040d thread_start + 13
Thread 20:
0 libsystem_pthread.dylib 0x00007fff5d2703f0 start_wqthread + 0
Thread 21:
0 libsystem_pthread.dylib 0x00007fff5d2703f0 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010f31c5c0 rcx: 0x00000001042bba48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00000001042bba80 rsp: 0x00000001042bba48
r8: 0x00000001042bbf48 r9: 0xc2f15678f4062e13 r10: 0x000000010f31c66c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x000000012fc5c190 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5d1b82c2 rfl: 0x0000000000000286 cr2: 0x000000010406ffa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x104cce000 - 0x104d0cfff +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
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0x104db5000 - 0x104db6ff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
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0x104f66000 - 0x104f78fff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so
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0x10c2c7000 - 0x10c2f9fff +wrapper.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/wrapper.cpython-37m-darwin.so
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0x7fff5d27d000 - 0x7fff5d27fff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff5d280000 - 0x7fff5d287ff3 libsystem_symptoms.dylib (820.267.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5d288000 - 0x7fff5d29dff7 libsystem_trace.dylib (906.260.3) /usr/lib/system/libsystem_trace.dylib
0x7fff5d29f000 - 0x7fff5d2a4ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5d2a5000 - 0x7fff5d2d4fff libxpc.dylib (1336.261.7) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 3210
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 42151743
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=713.1M resident=0K(0%) swapped_out_or_unallocated=713.1M(100%)
Writable regions: Total=1.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 1328K 4
CG image 196K 36
CoreAnimation 696K 47
CoreGraphics 8K 1
CoreImage 52K 8
CoreUI image data 1512K 30
CoreUI image file 560K 7
Foundation 24K 2
Kernel Alloc Once 8K 1
MALLOC 1.1G 467
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
Memory Tag 251 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 84K 21
Stack 138.7M 22
Stack Guard 56.0M 1
VM_ALLOCATE 257.1M 317
__DATA 44.2M 473
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 247.9M 142
__TEXT 465.2M 449
__UNICODE 564K 1
mapped file 124.3M 70
shared memory 756K 18
=========== ======= =======
TOTAL 2.6G 2141
TOTAL, minus reserved VM space 2.4G 2141
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-12.10.31
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,1
Processor Name: Intel Core i5
Processor Speed: 2,3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 429.140.8.0.0
SMC Version (system): 2.43f6
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G9323)
Kernel Version: Darwin 18.7.0
Time since boot: 20 days 14:57
Graphics/Displays:
Intel Iris Plus Graphics 640:
Chipset Model: Intel Iris Plus Graphics 640
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5926
Revision ID: 0x0006
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
ASUS VN248:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: H5LMTF173635
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DisplayPort
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Sessions |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash gathering atomic session info |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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