QTimer.start() requires integer argument

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-12.0.1-arm64-arm-64bit
ChimeraX Version: 1.7.dev202306122125 (2023-06-12 21:25:46 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.7.dev202306122125 (2023-06-12)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/vijayramani/Downloads/7kbd.cif

7kbd.cif title:  
Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo
fraction) [more info...]  
  
Chain information for 7kbd.cif #1  
---  
Chain | Description | UniProt  
A E | Histone H3.2 | H32_XENLA 0-135  
B F | Histone H4 | H4_XENLA 0-102  
C G | Histone H2A | Q6DKE3_XENLA 1-139  
D H | Histone H2B 1.1 | H2B11_XENLA 0-125  
I | DNA (151-MER) |  
J | DNA (151-MER) |  
  

> style stick

Changed 12169 atom styles  

> style stick

Changed 12169 atom styles  

> style sphere

Changed 12169 atom styles  

> style ball

Changed 12169 atom styles  

> hide cartoons

> show cartoons

> show atoms

> hide atoms

> lighting simple

> preset "overall look" "publication 1 (silhouettes)"

Using preset: Overall Look / Publication 1 (Silhouettes)  
Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t
    lighting depthCue f

  

> color bypolymer

> select add #1

12169 atoms, 13002 bonds, 385 pseudobonds, 1057 residues, 2 models selected  

> select subtract #1

Nothing selected  

> nucleotides atoms

> style nucleic stick

Changed 6190 atom styles  

> show surfaces

> hide surfaces

> show cartoons

> hide cartoons

> show cartoons

> hide atoms

> show atoms

> hide atoms

> color bypolymer

> color #1.2 #0433ffff

> color #1.2 #0096ffff

> hide #1.1 models

> show #1.1 models

> close session

> open /Users/vijayramani/Downloads/7kbd.pdb

7kbd.pdb title:  
Nucleosome In interphase chromosome formed In xenopus egg extract (oligo
fraction) [more info...]  
  
Chain information for 7kbd.pdb #1  
---  
Chain | Description | UniProt  
A E | histone H3 | H32_XENLA 0-135  
B F | histone H4 | H4_XENLA 0-102  
C G | histone H2A | Q6DKE3_XENLA 1-139  
D H | H2B1.1 | H2B11_XENLA 0-125  
I | DNA (151-mer) |  
J | DNA (151-mer) |  
  

> hide surfaces

[Repeated 2 time(s)]

> preset "overall look" "publication 2 (depth-cued)"

Using preset: Overall Look / Publication 2 (Depth-Cued)  
Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes f
    lighting depthCue t

  

> hide surfaces

> show cartoons

> hide surfaces

[Repeated 2 time(s)]

> hide atoms

> view clip false

> show target m

[Repeated 2 time(s)]

> select add #1

12169 atoms, 13002 bonds, 1057 residues, 1 model selected  

> select subtract #1

Nothing selected  

> select /D/H

1463 atoms, 1485 bonds, 187 residues, 1 model selected  

> color sel red

> select /C

790 atoms, 800 bonds, 104 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel goldenrod

> select /A/E

1602 atoms, 1626 bonds, 194 residues, 1 model selected  

> color sel cornflower blue

> select /B/F

1316 atoms, 1330 bonds, 164 residues, 1 model selected  

> color sel cornflower blue

> select /D

734 atoms, 745 bonds, 94 residues, 1 model selected  

> select /G

808 atoms, 818 bonds, 106 residues, 1 model selected  

> color sel red

> select /H

729 atoms, 740 bonds, 93 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel goldenrod

> select /G

808 atoms, 818 bonds, 106 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel goldenrod

> select /C

790 atoms, 800 bonds, 104 residues, 1 model selected  

> color sel red

> view sel

> select clear

> view

> setattr ~/percentAcc_0.txt

Missing or invalid "attrName" argument: Expected a text string  

> setattr acc_color ~/percentAcc_0.txt

Missing or invalid "attrValue" argument: Expected a text string  

> setattr ~/percentAcc_0.txt acc_color

Missing or invalid "attrValue" argument: Expected a text string  

> setattr ~/percentAcc_0.txt

Missing or invalid "attrName" argument: Expected a text string  

> setattr ~/percentAcc_0.txt

Missing or invalid "attrName" argument: Expected a text string  

> setattr ~/percentAcc_0.txt

Missing or invalid "attrName" argument: Expected a text string  

> setattr residue ~/percentAcc_0.txt

Missing or invalid "attrValue" argument: Expected a text string  

> setattr percent_color ~/percentAcc_0.txt

Missing or invalid "attrValue" argument: Expected a text string  

> setattr percent_color ~/percentAcc_0.txt

Missing or invalid "attrValue" argument: Expected a text string  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (:1.J) on line 4 of /Users/vijayramani/percentAcc_0.txt  

> open /Users/vijayramani/percentAcc_0.txt

Unrecognized file suffix '.txt'  

> show target m

> ui tool show "Render By Attribute"

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 560, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1271, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/render_by_attr/__init__.py", line 28, in start_tool  
return RenderByAttrTool(session, tool_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/render_by_attr/tool.py", line 89, in __init__  
self.render_histogram = rh = MarkedHistogram(min_label=True, max_label=True,
status_line=tw.status)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/histogram.py", line 185, in __init__  
self._redraw_timer.start(1000 * redraw_delay)  
TypeError: arguments did not match any overloaded call:  
start(self, msec: int): argument 1 has unexpected type 'float'  
start(self): too many arguments  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1699, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/cmd.py", line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 567, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Render By
Attribute in bundle ChimeraX-RenderByAttr:  
arguments did not match any overloaded call:  
start(self, msec: int): argument 1 has unexpected type 'float'  
start(self): too many arguments  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Render By
Attribute in bundle ChimeraX-RenderByAttr:  
arguments did not match any overloaded call:  
start(self, msec: int): argument 1 has unexpected type 'float'  
start(self): too many arguments  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 567, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  

> log metadata #1

Metadata for 7kbd.pdb #1  
---  
Title | Nucleosome In interphase chromosome formed In xenopus egg extract
(oligo fraction)  
Citation | Structural features of nucleosomes In interphase andmetaphase
chromosomes. PMID: 34478647  
Source (natural) | Xenopus laevis (african clawed frog)  
Experimental method | Electron microscopy  
Resolution | 3.38Å  
  
> log chains #1

Chain information for 7kbd.pdb #1  
---  
Chain | Description | UniProt  
A E | histone H3 | H32_XENLA 0-135  
B F | histone H4 | H4_XENLA 0-102  
C G | histone H2A | Q6DKE3_XENLA 1-139  
D H | H2B1.1 | H2B11_XENLA 0-125  
I | DNA (151-mer) |  
J | DNA (151-mer) |  
  

> select /A:38-134

801 atoms, 813 bonds, 97 residues, 1 model selected  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (:1.J) on line 5 of /Users/vijayramani/percentAcc_0.txt  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (J:1) on line 4 of /Users/vijayramani/percentAcc_0.txt  

> open /Users/vijayramani/percentAcc_0.defattr

Failed opening file /Users/vijayramani/percentAcc_0.defattr:  
Bad atom specifier (1.J) on line 4 of percentAcc_0.defattr  

> open /Users/vijayramani/percentAcc_0.defattr

Bad atom specifier (1.J) on line 4 of percentAcc_0.defattr  

> select

12169 atoms, 13002 bonds, 1057 residues, 1 model selected  

> open /Users/vijayramani/percentAcc_0.defattr

Bad atom specifier (1.J) on line 4 of percentAcc_0.defattr  

> open /Users/vijayramani/percentAcc_0.defattr

Line 4 in percentAcc_0.defattr is either not of the form 'name: value' or is
missing initial tab  

> open /Users/vijayramani/percentAcc_0.defattr

Bad atom specifier (1.J) on line 4 of percentAcc_0.defattr  

> open /Users/vijayramani/percentAcc_0.defattr

Bad atom specifier (/1.J) on line 4 of percentAcc_0.defattr  

> open /Users/vijayramani/percentAcc_0.defattr

Bad atom specifier (/1.J) on line 4 of percentAcc_0.defattr  

> open /Users/vijayramani/percentAcc_0.txt

Unrecognized file suffix '.txt'  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (:1.J) on line 4 of /Users/vijayramani/percentAcc_0.txt  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (:1.J) on line 4 of /Users/vijayramani/percentAcc_0.txt  

> lighting full

> lighting soft

> lighting simple

> lighting soft

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (:1.J) on line 4 of /Users/vijayramani/percentAcc_0.txt  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (J:1) on line 4 of /Users/vijayramani/percentAcc_0.txt  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Bad atom specifier (:147.I) on line 5 of /Users/vijayramani/percentAcc_0.txt  

> defattr /Users/vijayramani/percentAcc_0.txt

The 'defattr' command is deprecated. Just use the 'open' command with your
.defattr file.  

Assigned attribute 'percentAcc' to 302 residues using match mode: 1-to-1  

> ui tool show "Render By Attribute"

[Repeated 1 time(s)]Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 560, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1271, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/render_by_attr/__init__.py", line 28, in start_tool  
return RenderByAttrTool(session, tool_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/render_by_attr/tool.py", line 89, in __init__  
self.render_histogram = rh = MarkedHistogram(min_label=True, max_label=True,
status_line=tw.status)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/widgets/histogram.py", line 185, in __init__  
self._redraw_timer.start(1000 * redraw_delay)  
TypeError: arguments did not match any overloaded call:  
start(self, msec: int): argument 1 has unexpected type 'float'  
start(self): too many arguments  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1699, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/cmd.py", line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 567, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Render By
Attribute in bundle ChimeraX-RenderByAttr:  
arguments did not match any overloaded call:  
start(self, msec: int): argument 1 has unexpected type 'float'  
start(self): too many arguments  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Render By
Attribute in bundle ChimeraX-RenderByAttr:  
arguments did not match any overloaded call:  
start(self, msec: int): argument 1 has unexpected type 'float'  
start(self): too many arguments  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 567, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 76.1
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,2
      Chip: Apple M1 Max
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 64 GB
      System Firmware Version: 7429.41.5
      OS Loader Version: 7429.41.5

Software:

    System Software Overview:

      System Version: macOS 12.0.1 (21A559)
      Kernel Version: Darwin 21.1.0
      Time since boot: 38 days 8:31

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 32
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.45.7
    ChimeraX-AtomicLibrary: 10.0.7
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.3
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202306122125
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.2
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.2
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.2
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.29
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.40.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2023.3.16
    imagesize: 1.4.1
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.3
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.6
    PyOpenGL-accelerate: 3.1.6
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.1.0
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.8.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.2
    traitlets: 5.9.0
    typing-extensions: 4.6.3
    tzdata: 2023.3
    urllib3: 2.0.3
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7

[Eric Pettersen]

So there's more of these things. I fixed this one.