QColor: argument 1 has unexpected type 'numpy.float64'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.7.dev202306080039 (2023-06-08 00:39:06 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.dev202306080039 (2023-06-08)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\ASUS\Downloads\4wjt_A (1).pdb" format pdb

Summary of feedback from opening C:\Users\ASUS\Downloads\4wjt_A (1).pdb  
---  
warnings | CONECT record for nonexistent atom: 2392  
Start residue of secondary structure not found: HELIX 8 AA8 PRO B 73 PHE B 78
1 6  
Start residue of secondary structure not found: HELIX 9 AA9 ASP B 79 TYR B 83
5 5  
Start residue of secondary structure not found: HELIX 10 AB1 GLY B 96 GLY B
101 1 6  
Start residue of secondary structure not found: HELIX 11 AB2 THR B 167 TRP B
175 1 9  
Start residue of secondary structure not found: HELIX 12 AB3 THR B 193 GLU B
202 1 10  
8 messages similar to the above omitted  
  
4wjt_A (1).pdb title:  
Stationary phase survival protein yuic from B.subtilis complexed with nag
[more info...]  
  
Chain information for 4wjt_A (1).pdb #1  
---  
Chain | Description | UniProt  
A | uncharacterized protein yuic | YUIC_BACSU 52-218  
  
Non-standard residues in 4wjt_A (1).pdb #1  
---  
DMS — dimethyl sulfoxide  
NAG — N-acetyl-D-glucosamine  
  

> set bgColor white

> set bgColor #ffffff00

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

15 atoms, 15 bonds, 1 residue, 1 model selected  

> color sel byhetero

> colour sel green

> color sel byhetero

> select clear

> color #1 yellow

> select /A:301@C4

1 atom, 1 residue, 1 model selected  

> select up

15 atoms, 15 bonds, 1 residue, 1 model selected  

> colour sel green

> color sel byhetero

> save C:\Users\ASUS\Desktop\image1.png supersample 3

> select clear

> select /A:161

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

47 atoms, 47 bonds, 5 residues, 1 model selected  

> select up

1148 atoms, 1173 bonds, 146 residues, 1 model selected  

> select down

47 atoms, 47 bonds, 5 residues, 1 model selected  

> select down

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select down

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select clear

> select /A:151

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

43 atoms, 42 bonds, 7 residues, 1 model selected  

> select up

1148 atoms, 1173 bonds, 146 residues, 1 model selected  

> select clear

> sequence chain #1/A

Alignment identifier is 1/A  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\log\tool.py",
line 206, in link_intercept  
chimerax_intercept(request_info, *args, session=self.session, view=self, **kw)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\ui\gui.py",
line 368, in thread_safe  
func(*args, **kw)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 446, in defer  
cxcmd(session, topic)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd  
run(session, cmd)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\cmd.py", line 212, in seqalign_chain  
alignment = session.alignments.new_alignment([chain], ident,
auto_associate=None, intrinsic=True)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 247, in new_alignment  
self._viewers[viewer_name].run_provider(self.session, viewer_name, self,
alignment=alignment)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 386, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1291, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\\__init__.py", line 37, in run_provider  
return _start_seq_viewer(session, "Sequence Viewer", alignment)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 858, in _start_seq_viewer  
return SequenceViewer(session, tool_name, alignment)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 55, in __init__  
self._finalize_init(alignment, from_session=False)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 168, in _finalize_init  
self.seq_canvas = SeqCanvas(parent, self, self.alignment)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 194, in __init__  
self.layout_alignment()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 772, in layout_alignment  
self.lead_block = SeqBlock(label_scene, self.main_scene, None, self.font,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1627, in __init__  
self.layout_lines(alignment.seqs, self.normal_label_color)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2323, in layout_lines  
self._layout_line(line, label_color, bli, end)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2283, in _layout_line  
self._colorize_label(line)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1935, in _colorize_label  
brush = QBrush(QColor(*color), Qt.SolidPattern)  
^^^^^^^^^^^^^^  
TypeError: arguments did not match any overloaded call:  
QColor(color: Qt.GlobalColor): argument 1 has unexpected type 'numpy.float64'  
QColor(rgb: int): argument 1 has unexpected type 'numpy.float64'  
QColor(rgba64: QRgba64): argument 1 has unexpected type 'numpy.float64'  
QColor(variant: Any): too many arguments  
QColor(): too many arguments  
QColor(r: int, g: int, b: int, alpha: int = 255): argument 1 has unexpected
type 'numpy.float64'  
QColor(name: str): argument 1 has unexpected type 'numpy.float64'  
QColor(a0: QColor): argument 1 has unexpected type 'numpy.float64'  
  
TypeError: arguments did not match any overloaded call:  
QColor(color: Qt.GlobalColor): argument 1 has unexpected type 'numpy.float64'  
QColor(rgb: int): argument 1 has unexpected type 'numpy.float64'  
QColor(rgba64: QRgba64): argument 1 has unexpected type 'numpy.float64'  
QColor(variant: Any): too many arguments  
QColor(): too many arguments  
QColor(r: int, g: int, b: int, alpha: int = 255): argument 1 has unexpected
type 'numpy.float64'  
QColor(name: str): argument 1 has unexpected type 'numpy.float64'  
QColor(a0: QColor): argument 1 has unexpected type 'numpy.float64'  
  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1935, in _colorize_label  
brush = QBrush(QColor(*color), Qt.SolidPattern)  
^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select /A:154

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

51 atoms, 50 bonds, 8 residues, 1 model selected  

> select up

1148 atoms, 1173 bonds, 146 residues, 1 model selected  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 4wjt_A (1).pdb_A SES surface #1.1: minimum, -18.70, mean
-1.74, maximum 10.69  
To also show corresponding color key, enter the above coulombic command and
add key true  

> select clear

[Repeated 1 time(s)]

> select /A:129@OD1

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 2 models selected  

> select up

65 atoms, 67 bonds, 9 residues, 2 models selected  

> select up

1148 atoms, 1173 bonds, 146 residues, 2 models selected  

> hide sel surfaces

Destroying pre-existing alignment with identifier 1/A  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 205, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 386, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1291, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\\__init__.py", line 52, in run_provider  
shortcuts.run_provider(session, name)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 1335, in run_provider  
keyboard_shortcuts(session).try_shortcut(name)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 390, in try_shortcut  
self.run_shortcut(keys)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 408, in run_shortcut  
sc.run(self.session, status = self._enabled)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 310, in run  
f(shortcut_atoms(s))  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 1047, in show_sequence  
run(session, 'sequence chain %s' % seq_chain_spec, log = False)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 513, in run  
run_command(session, command, **kw)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\cmd.py", line 212, in seqalign_chain  
alignment = session.alignments.new_alignment([chain], ident,
auto_associate=None, intrinsic=True)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 224, in new_alignment  
self.destroy_alignment(self._alignments[identify_as])  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 119, in destroy_alignment  
alignment._destroy()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 659, in _destroy  
self._notify_observers(self.NOTE_DESTROYED, None)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 711, in _notify_observers  
recipient.alignment_notification(note_name, note_data)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 472, in alignment_notification  
self.delete()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 504, in delete  
self.region_browser.destroy()  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'SequenceViewer' object has no attribute 'region_browser'  
  
AttributeError: 'SequenceViewer' object has no attribute 'region_browser'  
  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 504, in delete  
self.region_browser.destroy()  
^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Alignment identifier is 1/A  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 205, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 386, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1291, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\\__init__.py", line 52, in run_provider  
shortcuts.run_provider(session, name)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 1335, in run_provider  
keyboard_shortcuts(session).try_shortcut(name)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 390, in try_shortcut  
self.run_shortcut(keys)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 408, in run_shortcut  
sc.run(self.session, status = self._enabled)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 310, in run  
f(shortcut_atoms(s))  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 1047, in show_sequence  
run(session, 'sequence chain %s' % seq_chain_spec, log = False)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\shortcuts\shortcuts.py", line 513, in run  
run_command(session, command, **kw)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\cmd.py", line 212, in seqalign_chain  
alignment = session.alignments.new_alignment([chain], ident,
auto_associate=None, intrinsic=True)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 247, in new_alignment  
self._viewers[viewer_name].run_provider(self.session, viewer_name, self,
alignment=alignment)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 386, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1291, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\\__init__.py", line 37, in run_provider  
return _start_seq_viewer(session, "Sequence Viewer", alignment)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 858, in _start_seq_viewer  
return SequenceViewer(session, tool_name, alignment)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 55, in __init__  
self._finalize_init(alignment, from_session=False)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 168, in _finalize_init  
self.seq_canvas = SeqCanvas(parent, self, self.alignment)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 194, in __init__  
self.layout_alignment()  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 772, in layout_alignment  
self.lead_block = SeqBlock(label_scene, self.main_scene, None, self.font,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1627, in __init__  
self.layout_lines(alignment.seqs, self.normal_label_color)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2323, in layout_lines  
self._layout_line(line, label_color, bli, end)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2283, in _layout_line  
self._colorize_label(line)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1935, in _colorize_label  
brush = QBrush(QColor(*color), Qt.SolidPattern)  
^^^^^^^^^^^^^^  
TypeError: arguments did not match any overloaded call:  
QColor(color: Qt.GlobalColor): argument 1 has unexpected type 'numpy.float64'  
QColor(rgb: int): argument 1 has unexpected type 'numpy.float64'  
QColor(rgba64: QRgba64): argument 1 has unexpected type 'numpy.float64'  
QColor(variant: Any): too many arguments  
QColor(): too many arguments  
QColor(r: int, g: int, b: int, alpha: int = 255): argument 1 has unexpected
type 'numpy.float64'  
QColor(name: str): argument 1 has unexpected type 'numpy.float64'  
QColor(a0: QColor): argument 1 has unexpected type 'numpy.float64'  
  
TypeError: arguments did not match any overloaded call:  
QColor(color: Qt.GlobalColor): argument 1 has unexpected type 'numpy.float64'  
QColor(rgb: int): argument 1 has unexpected type 'numpy.float64'  
QColor(rgba64: QRgba64): argument 1 has unexpected type 'numpy.float64'  
QColor(variant: Any): too many arguments  
QColor(): too many arguments  
QColor(r: int, g: int, b: int, alpha: int = 255): argument 1 has unexpected
type 'numpy.float64'  
QColor(name: str): argument 1 has unexpected type 'numpy.float64'  
QColor(a0: QColor): argument 1 has unexpected type 'numpy.float64'  
  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1935, in _colorize_label  
brush = QBrush(QColor(*color), Qt.SolidPattern)  
^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.14761 Core Profile Forward-Compatible Context 20.45.44 27.20.14544.6
OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.2
Locale: en_MY.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: ASUSTeK COMPUTER INC.
Model: VivoBook_ASUSLaptop X409DA_M409DA
OS: Microsoft Windows 11 Home Single Language (Build 22621)
Memory: 6,387,490,816
MaxProcessMemory: 137,438,953,344
CPU: 8 AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx  
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.45.7
    ChimeraX-AtomicLibrary: 10.0.7
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.3
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202306080039
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.2
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.2
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.2
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.6
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.4
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2023.3.16
    imagesize: 1.4.1
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.1
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.6
    PyOpenGL-accelerate: 3.1.6
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.1.0
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.8.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.2
    traitlets: 5.9.0
    typing-extensions: 4.6.3
    tzdata: 2023.3
    urllib3: 2.0.3
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1

[Eric Pettersen]

The user unfortunately has the build from the day before the fixes went in.