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Opened 2 years ago
Closed 2 years ago
#9217 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.4.dev202202182306 (2022-02-18 23:06:44 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010d
Thread 0x00008a34 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000007e0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000081b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003d00 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003a2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000051a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003a4c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Current thread 0x00006244 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\runpy.py", line 197 in _run_module_as_main
Fatal Python error: Aborted
Thread 0x00008a34 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000007e0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000081b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003d00 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003a2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000051a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003a4c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\threading.py", line 930 in _bootstrap
Current thread 0x00006244 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
Startup Messages
---
warning | Your computer has Intel graphics driver 7926 with a known bug that
causes all Qt user interface panels to be blank. ChimeraX can partially fix
this but may make some panel titlebars and edges black. Hopefully newer Intel
graphics drivers will fix this.
You can double click a model's Name or ID in the model panel to edit those
fields
Updating list of available bundles failed: [SSL: CERTIFICATE_VERIFY_FAILED]
certificate verify failed: certificate has expired (_ssl.c:1129)
UCSF ChimeraX version: 1.4.dev202202182306 (2022-02-18)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1FGB
Summary of feedback from opening 1FGB fetched from pdb
---
note | Fetching compressed mmCIF 1fgb from
http://files.rcsb.org/download/1fgb.cif
1fgb title:
TOXIN [more info...]
Chain information for 1fgb #1
---
Chain | Description | UniProt
D E F G H | cholera toxin B subunit pentamer | CHTB_VIBCH
> show cartoons
> hide surfaces
> hide atoms
> open 8D1N
Summary of feedback from opening 8D1N fetched from pdb
---
notes | Fetching compressed mmCIF 8d1n from
http://files.rcsb.org/download/8d1n.cif
Fetching CCD MC3 from http://ligand-expo.rcsb.org/reports/M/MC3/MC3.cif
Fetching CCD DU0 from http://ligand-expo.rcsb.org/reports/D/DU0/DU0.cif
Fetching CCD CL from http://ligand-expo.rcsb.org/reports/C/CL/CL.cif
8d1n title:
bBest2_345 Ca2+-bound open state [more info...]
Chain information for 8d1n #2
---
Chain | Description | UniProt
A B C D E | Bestrophin | E1BF86_BOVIN
Non-standard residues in 8d1n #2
---
CA — calcium ion
CL — chloride ion
DU0 —
2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol
MC3 — 1,2-dimyristoyl-rac-glycero-3-phosphocholine
> hide cartoons
> show cartoons
> hide surfaces
> hide atoms
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1fgb, chain E (#1) with 8d1n, chain E (#2), sequence alignment
score = 3.8
RMSD between 5 pruned atom pairs is 0.899 angstroms; (across all 25 pairs:
18.301)
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1fgb, chain E (#1) with 8d1n, chain E (#2), sequence alignment
score = 3.8
RMSD between 5 pruned atom pairs is 0.899 angstroms; (across all 25 pairs:
18.301)
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1fgb, chain E (#1) with 8d1n, chain E (#2), sequence alignment
score = 3.8
RMSD between 5 pruned atom pairs is 0.899 angstroms; (across all 25 pairs:
18.301)
> hide #1 models
> show #1 models
> hide #!2 models
> hide #2.1 models
> show #!2 models
> open 7QDO
Summary of feedback from opening 7QDO fetched from pdb
---
note | Fetching compressed mmCIF 7qdo from
http://files.rcsb.org/download/7qdo.cif
7qdo title:
Cryo-EM structure of human monomeric IgM-Fc [more info...]
> hide #!2 models
> ui tool show Matchmaker
> matchmaker #3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1fgb, chain F (#1) with 7qdo, chain B (#3), sequence alignment
score = 30.6
RMSD between 9 pruned atom pairs is 0.513 angstroms; (across all 81 pairs:
26.325)
> hide #1 models
> open 8BPG
Summary of feedback from opening 8BPG fetched from pdb
---
note | Fetching compressed mmCIF 8bpg from
http://files.rcsb.org/download/8bpg.cif
8bpg title:
FcMR binding at subunit Fcu3 of IgM pentamer [more info...]
Non-standard residues in 8bpg #4
---
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)
> show #1 models
> hide #3 models
> ui tool show Matchmaker
QMainWindowLayout::tabPosition called with out-of-bounds value '0'
> matchmaker #4 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1fgb, chain H (#1) with 8bpg, chain D (#4), sequence alignment
score = 38.4
RMSD between 5 pruned atom pairs is 1.608 angstroms; (across all 85 pairs:
18.431)
> show #1,4 cartoons
> hide #1,4 surfaces
> hide #1,4 atoms
> hide #4 models
> open 6F9F
Summary of feedback from opening 6F9F fetched from pdb
---
note | Fetching compressed mmCIF 6f9f from
http://files.rcsb.org/download/6f9f.cif
6f9f title:
Model of the Rift Valley fever virus glycoprotein pentamer [more info...]
Chain information for 6f9f #5
---
Chain | Description | UniProt
A C E G I | Glycoprotein | A2T085_RVFV
B D F H J | Glycoprotein | A2T072_RVFV
> ui tool show Matchmaker
> matchmaker #!5 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1fgb, chain F (#1) with 6f9f, chain F (#5), sequence alignment
score = 31.7
RMSD between 5 pruned atom pairs is 1.051 angstroms; (across all 77 pairs:
30.499)
===== Log before crash end =====
Log:
Startup Messages
---
warning | Your computer has Intel graphics driver 7926 with a known bug that
causes all Qt user interface panels to be blank. ChimeraX can partially fix
this but may make some panel titlebars and edges black. Hopefully newer Intel
graphics drivers will fix this.
UCSF ChimeraX version: 1.4.dev202202182306 (2022-02-18)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 26.20.100.7926
OpenGL renderer: Intel(R) HD Graphics 620
OpenGL vendor: Intel
Locale: en_GB.cp1252
Qt version: PyQt5 5.15.2, Qt 5.15.2
Qt platform: windows
Manufacturer: HP
Model: HP Laptop 14s-dq0xxx
OS: Microsoft Windows 10 Home (Build 19045)
Memory: 8,474,660,864
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i3-7020U CPU @ 2.30GHz
OSLanguage: en-GB
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.5.2
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.36.2
ChimeraX-AtomicLibrary: 6.0.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.1
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202202182306
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.1
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.7.7
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.16.1
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.5.1
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.29.1
funcparserlib: 1.0.0a0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.26
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.9.2
kiwisolver: 1.3.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.0
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.4
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 9.0.0
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.28
psutil: 5.9.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 303
pyzmq: 22.3.0
qtconsole: 5.2.2
QtPy: 2.0.1
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.8
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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