Opened 2 years ago

Closed 2 years ago

#9205 closed defect (nonchimerax)

Graphics crash, macOS 10.15.4, Intel

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett) 

The following bug report has been submitted:
Platform:        macOS-10.15.4-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Current thread 0x000000011257ddc0 (most recent call first):
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/opengl.py", line 2664 in update_buffer_data
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 1846 in update_buffers
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 1858 in activate_bindings
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 785 in _draw_geometry
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 762 in draw_self
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 751 in draw
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 1511 in _draw_multiple
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 1504 in 
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/opengl.py", line 1223 in draw_transparent
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py", line 1503 in draw_transparent
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/view.py", line 240 in _draw_scene
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/view.py", line 165 in draw
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py", line 157 in update_graphics_now
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/map/volume_viewer.py", line 2226 in moved_marker_cb
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/map/histogram.py", line 414 in move_marker_cb
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/map/volume_viewer.py", line 2152 in _drag
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/map/volume_viewer.py", line 2155 in mouseReleaseEvent
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in 
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main


Process:               ChimeraX [9217]
Path:                  /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.2.5 (1.2.5.0)
Code Type:             X86-64 (Native)
Parent Process:        ??? [1]
Responsible:           ChimeraX [9217]
User ID:               502

Date/Time:             2023-06-18 13:16:35.553 -0700
OS Version:            Mac OS X 10.15.4 (19E2269)
Report Version:        12
Bridge OS Version:     4.4 (17P4538)
Anonymous UUID:        FB37B92F-5B7A-3DD8-370D-6A590B7F5BA9

Sleep/Wake UUID:       C632189E-E004-4D1D-92EF-E569B83BCB78

Time Awake Since Boot: 76000 seconds
Time Since Wake:       3800 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_CRASH (SIGABRT)
Exception Codes:       0x0000000000000000, 0x0000000000000000
Exception Note:        EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called

Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813


Thread 0 Crashed:: CrBrowserMain  Dispatch queue: com.apple.main-thread
0   libsystem_kernel.dylib        	0x00007fff6909c33a __pthread_kill + 10
1   libsystem_pthread.dylib       	0x00007fff69158e60 pthread_kill + 430
2   libsystem_c.dylib             	0x00007fff68fb393e raise + 26
3   libsystem_platform.dylib      	0x00007fff6914d5fd _sigtramp + 29
4   ???                           	000000000000000000 0 + 0
5   libsystem_c.dylib             	0x00007fff69023808 abort + 120
6   libGPUSupportMercury.dylib    	0x00007fff502490a5 gpusGenerateCrashLog.cold.1 + 95
7   libGPUSupportMercury.dylib    	0x00007fff5024018f gpusGenerateCrashLog + 89
8   com.apple.driver.AppleIntelICLGraphicsGLDriver	0x00007fff24ce7ac8 gpusKillClientExt + 9
9   libGPUSupportMercury.dylib    	0x00007fff502416a1 gpusSubmitDataBuffers + 490
10  com.apple.driver.AppleIntelICLGraphicsGLDriver	0x00007fff23f55e50 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11  com.apple.driver.AppleIntelICLGraphicsGLDriver	0x00007fff23f55c3c intelSubmitCommands + 171
12  com.apple.driver.AppleIntelICLGraphicsGLDriver	0x00007fff23f5babb glrWriteBufferData + 561
13  GLEngine                      	0x00007fff39a18d6c glBufferSubData_Exec + 608
14  _ctypes.cpython-38-darwin.so  	0x0000000112376f97 ffi_call_unix64 + 79
15  _ctypes.cpython-38-darwin.so  	0x00000001123777f8 ffi_call + 872
16  _ctypes.cpython-38-darwin.so  	0x0000000112371df2 _ctypes_callproc + 962
17  _ctypes.cpython-38-darwin.so  	0x000000011236bb90 PyCFuncPtr_call + 1152
18  org.python.python             	0x000000010aa3cef2 PyObject_Call + 162
19  org.python.python             	0x000000010aa92c19 slot_tp_call + 201
20  wrapper.cpython-38-darwin.so  	0x000000012cc6d971 __Pyx_PyObject_Call + 97
21  wrapper.cpython-38-darwin.so  	0x000000012cc7a7fd __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 765
22  latebind.cpython-38-darwin.so 	0x000000012ccd6041 __Pyx_PyObject_Call + 97
23  latebind.cpython-38-darwin.so 	0x000000012ccd55ce __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 302
24  org.python.python             	0x000000010aa3ca85 _PyObject_MakeTpCall + 373
25  org.python.python             	0x000000010ab0b665 call_function + 533
26  org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
27  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
28  org.python.python             	0x000000010aa3d319 _PyFunction_FastCallDict + 505
29  latebind.cpython-38-darwin.so 	0x000000012ccd6041 __Pyx_PyObject_Call + 97
30  latebind.cpython-38-darwin.so 	0x000000012ccd7421 __pyx_pw_17OpenGL_accelerate_8latebind_5Curry_3__call__ + 129
31  org.python.python             	0x000000010aa3ca85 _PyObject_MakeTpCall + 373
32  org.python.python             	0x000000010ab0b665 call_function + 533
33  org.python.python             	0x000000010ab0846e _PyEval_EvalFrameDefault + 25678
34  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
35  org.python.python             	0x000000010ab0b60c call_function + 444
36  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
37  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
38  org.python.python             	0x000000010ab0b60c call_function + 444
39  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
40  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
41  org.python.python             	0x000000010ab0b60c call_function + 444
42  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
43  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
44  org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
45  org.python.python             	0x000000010aa3fa9a method_vectorcall + 170
46  org.python.python             	0x000000010ab0b60c call_function + 444
47  org.python.python             	0x000000010ab08598 _PyEval_EvalFrameDefault + 25976
48  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
49  org.python.python             	0x000000010ab0b60c call_function + 444
50  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
51  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
52  org.python.python             	0x000000010ab0b60c call_function + 444
53  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
54  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
55  org.python.python             	0x000000010ab0b60c call_function + 444
56  org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
57  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
58  org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
59  org.python.python             	0x000000010ab0b60c call_function + 444
60  org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
61  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
62  org.python.python             	0x000000010ab0b60c call_function + 444
63  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
64  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
65  org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
66  org.python.python             	0x000000010ab0b60c call_function + 444
67  org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
68  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
69  org.python.python             	0x000000010ab0b60c call_function + 444
70  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
71  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
72  org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
73  org.python.python             	0x000000010aa3fa9a method_vectorcall + 170
74  org.python.python             	0x000000010ab0b60c call_function + 444
75  org.python.python             	0x000000010ab08598 _PyEval_EvalFrameDefault + 25976
76  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
77  org.python.python             	0x000000010ab0b60c call_function + 444
78  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
79  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
80  org.python.python             	0x000000010ab0b60c call_function + 444
81  org.python.python             	0x000000010ab0844a _PyEval_EvalFrameDefault + 25642
82  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
83  org.python.python             	0x000000010aa3fa9a method_vectorcall + 170
84  org.python.python             	0x000000010ab0b60c call_function + 444
85  org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
86  org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
87  org.python.python             	0x000000010aa3fa9a method_vectorcall + 170
88  org.python.python             	0x000000010ab0b60c call_function + 444
89  org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
90  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
91  org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
92  org.python.python             	0x000000010aa3fa9a method_vectorcall + 170
93  org.python.python             	0x000000010ab0b60c call_function + 444
94  org.python.python             	0x000000010ab0846e _PyEval_EvalFrameDefault + 25678
95  org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
96  org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
97  org.python.python             	0x000000010aa3fb7c method_vectorcall + 396
98  org.python.python             	0x000000010aa3cdad PyVectorcall_Call + 109
99  sip.cpython-38-darwin.so      	0x000000011b4309d7 sip_api_call_procedure_method + 199
100 QtWidgets.abi3.so             	0x000000011b59d048 sipQGraphicsView::mouseReleaseEvent(QMouseEvent*) + 104
101 QtWidgets                     	0x000000011baa7dfd QWidget::event(QEvent*) + 445
102 QtWidgets                     	0x000000011bb5058d QFrame::event(QEvent*) + 45
103 QtWidgets                     	0x000000011bdcbb07 QGraphicsView::viewportEvent(QEvent*) + 1191
104 QtWidgets.abi3.so             	0x000000011b59e5df sipQGraphicsView::viewportEvent(QEvent*) + 191
105 QtCore                        	0x000000011929dceb QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 155
106 QtWidgets                     	0x000000011ba6d9d5 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 245
107 QtWidgets                     	0x000000011ba70755 QApplication::notify(QObject*, QEvent*) + 6965
108 QtWidgets.abi3.so             	0x000000011b620db9 sipQApplication::notify(QObject*, QEvent*) + 233
109 QtCore                        	0x000000011929da34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
110 QtWidgets                     	0x000000011ba6e310 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
111 QtWidgets                     	0x000000011bac7022 QWidgetWindow::handleMouseEvent(QMouseEvent*) + 3266
112 QtWidgets                     	0x000000011bac56e9 QWidgetWindow::event(QEvent*) + 233
113 QtWidgets                     	0x000000011ba6d9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
114 QtWidgets                     	0x000000011ba6ee11 QApplication::notify(QObject*, QEvent*) + 497
115 QtWidgets.abi3.so             	0x000000011b620db9 sipQApplication::notify(QObject*, QEvent*) + 233
116 QtCore                        	0x000000011929da34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
117 QtGui                         	0x000000011c0dae2e QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3534
118 QtGui                         	0x000000011c0bfd7b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
119 libqcocoa.dylib               	0x0000000129fb8260 QCocoaEventDispatcherPrivate::processPostedEvents() + 320
120 libqcocoa.dylib               	0x0000000129fb89c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
121 com.apple.CoreFoundation      	0x00007fff2eed7f12 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
122 com.apple.CoreFoundation      	0x00007fff2eed7eb1 __CFRunLoopDoSource0 + 103
123 com.apple.CoreFoundation      	0x00007fff2eed7ccb __CFRunLoopDoSources0 + 209
124 com.apple.CoreFoundation      	0x00007fff2eed69fa __CFRunLoopRun + 927
125 com.apple.CoreFoundation      	0x00007fff2eed5ffe CFRunLoopRunSpecific + 462
126 com.apple.HIToolbox           	0x00007fff2db09abd RunCurrentEventLoopInMode + 292
127 com.apple.HIToolbox           	0x00007fff2db096f4 ReceiveNextEventCommon + 359
128 com.apple.HIToolbox           	0x00007fff2db09579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
129 com.apple.AppKit              	0x00007fff2c154c99 _DPSNextEvent + 883
130 com.apple.AppKit              	0x00007fff2c1534e0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
131 com.apple.AppKit              	0x00007fff2c1451ee -[NSApplication run] + 658
132 libqcocoa.dylib               	0x0000000129fb762f QCocoaEventDispatcher::processEvents(QFlags) + 2495
133 QtCore                        	0x0000000119299acf QEventLoop::exec(QFlags) + 431
134 QtCore                        	0x000000011929e042 QCoreApplication::exec() + 130
135 QtWidgets.abi3.so             	0x000000011b712702 meth_QApplication_exec_(_object*, _object*) + 82
136 org.python.python             	0x000000010aa3d0c2 cfunction_call_varargs + 290
137 org.python.python             	0x000000010aa3ca85 _PyObject_MakeTpCall + 373
138 org.python.python             	0x000000010ab0b665 call_function + 533
139 org.python.python             	0x000000010ab0846e _PyEval_EvalFrameDefault + 25678
140 org.python.python             	0x000000010aa3d3d0 function_code_fastcall + 128
141 org.python.python             	0x000000010aa3fa9a method_vectorcall + 170
142 org.python.python             	0x000000010ab0b60c call_function + 444
143 org.python.python             	0x000000010ab0846e _PyEval_EvalFrameDefault + 25678
144 org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
145 org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
146 org.python.python             	0x000000010ab0b60c call_function + 444
147 org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
148 org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
149 org.python.python             	0x000000010ab01f44 PyEval_EvalCode + 100
150 org.python.python             	0x000000010aaff332 builtin_exec + 626
151 org.python.python             	0x000000010aa795ff cfunction_vectorcall_FASTCALL + 175
152 org.python.python             	0x000000010ab0b60c call_function + 444
153 org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
154 org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
155 org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
156 org.python.python             	0x000000010ab0b60c call_function + 444
157 org.python.python             	0x000000010ab08505 _PyEval_EvalFrameDefault + 25829
158 org.python.python             	0x000000010ab0c454 _PyEval_EvalCodeWithName + 2804
159 org.python.python             	0x000000010aa3d56e _PyFunction_Vectorcall + 270
160 org.python.python             	0x000000010aa3cdad PyVectorcall_Call + 109
161 org.python.python             	0x000000010ab6eeb3 pymain_run_module + 195
162 org.python.python             	0x000000010ab6e585 Py_RunMain + 1413
163 org.python.python             	0x000000010ab6ebdf pymain_main + 223
164 org.python.python             	0x000000010ab6eaeb Py_Main + 43
165 edu.ucsf.cgl.ChimeraX         	0x000000010aa13dc8 main + 120
166 libdyld.dylib                 	0x00007fff68f54cc9 start + 1

Thread 1:
0   libsystem_kernel.dylib        	0x00007fff69098882 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fff69159425 _pthread_cond_wait + 698
2   libopenblas.0.dylib           	0x000000010c58227b blas_thread_server + 507
3   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
4   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 2:
0   libsystem_kernel.dylib        	0x00007fff69098882 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fff69159425 _pthread_cond_wait + 698
2   libopenblas.0.dylib           	0x000000010c58227b blas_thread_server + 507
3   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
4   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 3:
0   libsystem_kernel.dylib        	0x00007fff69098882 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fff69159425 _pthread_cond_wait + 698
2   libopenblas.0.dylib           	0x000000010c58227b blas_thread_server + 507
3   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
4   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 4:: ThreadPoolServiceThread
0   libsystem_kernel.dylib        	0x00007fff6909eb96 kevent64 + 10
1   QtWebEngineCore               	0x000000011f76ce6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2   QtWebEngineCore               	0x000000011f76ccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
5   QtWebEngineCore               	0x000000011f700a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
7   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
9   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 5:: ThreadPoolForegroundWorker
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f70a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4   QtWebEngineCore               	0x000000011f70b150 base::internal::WorkerThread::RunWorker() + 1024
5   QtWebEngineCore               	0x000000011f70acd4 base::internal::WorkerThread::RunPooledWorker() + 20
6   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
8   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 6:: ThreadPoolBackgroundWorker
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f70a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4   QtWebEngineCore               	0x000000011f70b150 base::internal::WorkerThread::RunWorker() + 1024
5   QtWebEngineCore               	0x000000011f70ac44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
8   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 7:: Chrome_IOThread
0   libsystem_kernel.dylib        	0x00007fff6909eb96 kevent64 + 10
1   QtWebEngineCore               	0x000000011f76ce6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2   QtWebEngineCore               	0x000000011f76ccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
5   QtWebEngineCore               	0x0000000123639f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
7   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
9   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 8:: NetworkConfigWatcher
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f68a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
7   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
8   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
10  libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 9:: ThreadPoolForegroundWorker
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f70a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4   QtWebEngineCore               	0x000000011f70b150 base::internal::WorkerThread::RunWorker() + 1024
5   QtWebEngineCore               	0x000000011f70acd4 base::internal::WorkerThread::RunPooledWorker() + 20
6   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
8   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 10:: ThreadPoolForegroundWorker
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f70a778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4   QtWebEngineCore               	0x000000011f70b150 base::internal::WorkerThread::RunWorker() + 1024
5   QtWebEngineCore               	0x000000011f70acd4 base::internal::WorkerThread::RunPooledWorker() + 20
6   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
8   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 11:: CompositorTileWorker1
0   libsystem_kernel.dylib        	0x00007fff69098882 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fff69159425 _pthread_cond_wait + 698
2   QtWebEngineCore               	0x000000011f759e18 base::ConditionVariable::Wait() + 104
3   QtWebEngineCore               	0x0000000120a115f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
6   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 12:: Chrome_InProcGpuThread
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f68a20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
6   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
7   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
9   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 13:: Chrome_ChildIOThread
0   libsystem_kernel.dylib        	0x00007fff6909eb96 kevent64 + 10
1   QtWebEngineCore               	0x000000011f76ce6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2   QtWebEngineCore               	0x000000011f76ccc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
5   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
6   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
8   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 14:: NetworkConfigWatcher
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f68a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
7   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
8   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
10  libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 15:: VizCompositorThread
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f68a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
7   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
8   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
10  libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 16:: NetworkConfigWatcher
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f68a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
7   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
8   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
10  libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 17:: ThreadPoolSingleThreadForegroundBlocking0
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f70a76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5   QtWebEngineCore               	0x000000011f70b150 base::internal::WorkerThread::RunWorker() + 1024
6   QtWebEngineCore               	0x000000011f70ad34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
9   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 18:: MemoryInfra
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f68a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
7   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
8   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
10  libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 19:: NetworkConfigWatcher
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f68a1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5   QtWebEngineCore               	0x000000011f6f562b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6   QtWebEngineCore               	0x000000011f6b97cb base::RunLoop::Run() + 395
7   QtWebEngineCore               	0x000000011f714a7d base::Thread::ThreadMain() + 413
8   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
10  libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 20:: com.apple.NSEventThread
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   com.apple.CoreFoundation      	0x00007fff2eed80b5 __CFRunLoopServiceMachPort + 247
3   com.apple.CoreFoundation      	0x00007fff2eed6b82 __CFRunLoopRun + 1319
4   com.apple.CoreFoundation      	0x00007fff2eed5ffe CFRunLoopRunSpecific + 462
5   com.apple.AppKit              	0x00007fff2c2f65b4 _NSEventThread + 132
6   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
7   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 21:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0   libsystem_kernel.dylib        	0x00007fff69095dfa mach_msg_trap + 10
1   libsystem_kernel.dylib        	0x00007fff69096170 mach_msg + 60
2   QtWebEngineCore               	0x000000011f762492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3   QtWebEngineCore               	0x000000011f7622cf base::WaitableEvent::Wait() + 31
4   QtWebEngineCore               	0x000000011f70a76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5   QtWebEngineCore               	0x000000011f70ae3d base::internal::WorkerThread::RunWorker() + 237
6   QtWebEngineCore               	0x000000011f70ac74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7   QtWebEngineCore               	0x000000011f75de07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8   libsystem_pthread.dylib       	0x00007fff69159109 _pthread_start + 148
9   libsystem_pthread.dylib       	0x00007fff69154b8b thread_start + 15

Thread 22:
0   libsystem_pthread.dylib       	0x00007fff69154b68 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x000000011257ddc0  rcx: 0x000000010aefa418  rdx: 0x0000000000000000
  rdi: 0x0000000000000307  rsi: 0x0000000000000006  rbp: 0x000000010aefa440  rsp: 0x000000010aefa418
   r8: 0x000000010aefaf48   r9: 0x8ba0f38a28300b78  r10: 0x000000011257ddc0  r11: 0x0000000000000246
  r12: 0x0000000000000307  r13: 0x0000000146b253c8  r14: 0x0000000000000006  r15: 0x0000000000000016
  rip: 0x00007fff6909c33a  rfl: 0x0000000000000246  cr2: 0x000000010aef98c0
  
Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133


Binary Images:
       0x10aa13000 -        0x10aa13ff3 +edu.ucsf.cgl.ChimeraX (1.2.5 - 1.2.5.0)  /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
       0x10aa1c000 -        0x10ac52ff7 +org.python.python (3.8.8, [c] 2001-2019 Python Software Foundation. - 3.8.8)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/Python
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       0x10b257000 -        0x10b258ff7 +_random.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_random.cpython-38-darwin.so
       0x10b37b000 -        0x10b380fff +_json.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_json.cpython-38-darwin.so
       0x10b3ca000 -        0x10b3deff7 +_ssl.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ssl.cpython-38-darwin.so
       0x10b3f7000 -        0x10b44ffff +libssl.1.1.dylib (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libssl.1.1.dylib
       0x10b47e000 -        0x10b694da7 +libcrypto.1.1.dylib (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libcrypto.1.1.dylib
       0x10b732000 -        0x10b73ffff +_socket.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_socket.cpython-38-darwin.so
       0x10b7cc000 -        0x10b7cfff7 +select.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
       0x10b7d9000 -        0x10b7defff +_struct.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_struct.cpython-38-darwin.so
       0x10b7eb000 -        0x10b7effff +binascii.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/binascii.cpython-38-darwin.so
       0x10b838000 -        0x10b83bff7 +_hashlib.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_hashlib.cpython-38-darwin.so
       0x10b845000 -        0x10b84bfff +_blake2.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_blake2.cpython-38-darwin.so
       0x10b855000 -        0x10b865fff +_sha3.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha3.cpython-38-darwin.so
       0x10b8ef000 -        0x10b8fefff +_datetime.cpython-38-darwin.so (0)  /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_datetime.cpython-38-darwin.so
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    0x7fff67e6c000 -     0x7fff67e6fff3  libpmenergy.dylib (214.100.2)  /usr/lib/libpmenergy.dylib
    0x7fff67e70000 -     0x7fff67e72fff  libpmsample.dylib (214.100.2)  /usr/lib/libpmsample.dylib
    0x7fff67ea1000 -     0x7fff67eb9fff  libresolv.9.dylib (67.40.1)  /usr/lib/libresolv.9.dylib
    0x7fff67ebb000 -     0x7fff67effff7  libsandbox.1.dylib (1217.101.2)  /usr/lib/libsandbox.1.dylib
    0x7fff67f00000 -     0x7fff67f12ff7  libsasl2.2.dylib (213)  /usr/lib/libsasl2.2.dylib
    0x7fff67f13000 -     0x7fff67f14ff7  libspindump.dylib (281.3)  /usr/lib/libspindump.dylib
    0x7fff67f15000 -     0x7fff680ffff7  libsqlite3.dylib (308.4)  /usr/lib/libsqlite3.dylib
    0x7fff681f3000 -     0x7fff68220ffb  libssl.46.dylib (47.100.4)  /usr/lib/libssl.46.dylib
    0x7fff682f5000 -     0x7fff6834fff8  libusrtcp.dylib (1880.100.30)  /usr/lib/libusrtcp.dylib
    0x7fff68350000 -     0x7fff68353ffb  libutil.dylib (57)  /usr/lib/libutil.dylib
    0x7fff68354000 -     0x7fff68361ff7  libxar.1.dylib (425.2)  /usr/lib/libxar.1.dylib
    0x7fff68367000 -     0x7fff68449ff7  libxml2.2.dylib (33.3)  /usr/lib/libxml2.2.dylib
    0x7fff6844d000 -     0x7fff68475fff  libxslt.1.dylib (16.9)  /usr/lib/libxslt.1.dylib
    0x7fff68476000 -     0x7fff68488ff3  libz.1.dylib (76)  /usr/lib/libz.1.dylib
    0x7fff68d36000 -     0x7fff68d3bff3  libcache.dylib (83)  /usr/lib/system/libcache.dylib
    0x7fff68d3c000 -     0x7fff68d47fff  libcommonCrypto.dylib (60165)  /usr/lib/system/libcommonCrypto.dylib
    0x7fff68d48000 -     0x7fff68d4ffff  libcompiler_rt.dylib (101.2)  /usr/lib/system/libcompiler_rt.dylib
    0x7fff68d50000 -     0x7fff68d59ff7  libcopyfile.dylib (166.40.1)  /usr/lib/system/libcopyfile.dylib
    0x7fff68d5a000 -     0x7fff68decfe3  libcorecrypto.dylib (866.100.30)  /usr/lib/system/libcorecrypto.dylib
    0x7fff68ef9000 -     0x7fff68f39ff0  libdispatch.dylib (1173.100.2)  /usr/lib/system/libdispatch.dylib
    0x7fff68f3a000 -     0x7fff68f70fff  libdyld.dylib (750.5)  /usr/lib/system/libdyld.dylib
    0x7fff68f71000 -     0x7fff68f71ffb  libkeymgr.dylib (30)  /usr/lib/system/libkeymgr.dylib
    0x7fff68f72000 -     0x7fff68f7eff3  libkxld.dylib (6153.101.6)  /usr/lib/system/libkxld.dylib
    0x7fff68f7f000 -     0x7fff68f7fff7  liblaunch.dylib (1738.100.39)  /usr/lib/system/liblaunch.dylib
    0x7fff68f80000 -     0x7fff68f85ff7  libmacho.dylib (959.0.1)  /usr/lib/system/libmacho.dylib
    0x7fff68f86000 -     0x7fff68f88ff3  libquarantine.dylib (110.40.3)  /usr/lib/system/libquarantine.dylib
    0x7fff68f89000 -     0x7fff68f8aff7  libremovefile.dylib (48)  /usr/lib/system/libremovefile.dylib
    0x7fff68f8b000 -     0x7fff68fa2ff3  libsystem_asl.dylib (377.60.2)  /usr/lib/system/libsystem_asl.dylib
    0x7fff68fa3000 -     0x7fff68fa3ff7  libsystem_blocks.dylib (74)  /usr/lib/system/libsystem_blocks.dylib
    0x7fff68fa4000 -     0x7fff6902bfff  libsystem_c.dylib (1353.100.2)  /usr/lib/system/libsystem_c.dylib
    0x7fff6902c000 -     0x7fff6902fffb  libsystem_configuration.dylib (1061.101.1)  /usr/lib/system/libsystem_configuration.dylib
    0x7fff69030000 -     0x7fff69033fff  libsystem_coreservices.dylib (114)  /usr/lib/system/libsystem_coreservices.dylib
    0x7fff69034000 -     0x7fff6903cfff  libsystem_darwin.dylib (1353.100.2)  /usr/lib/system/libsystem_darwin.dylib
    0x7fff6903d000 -     0x7fff69044fff  libsystem_dnssd.dylib (1096.100.3)  /usr/lib/system/libsystem_dnssd.dylib
    0x7fff69045000 -     0x7fff69046ffb  libsystem_featureflags.dylib (17)  /usr/lib/system/libsystem_featureflags.dylib
    0x7fff69047000 -     0x7fff69094ff7  libsystem_info.dylib (538)  /usr/lib/system/libsystem_info.dylib
    0x7fff69095000 -     0x7fff690c1ff7  libsystem_kernel.dylib (6153.101.6)  /usr/lib/system/libsystem_kernel.dylib
    0x7fff690c2000 -     0x7fff69109fff  libsystem_m.dylib (3178)  /usr/lib/system/libsystem_m.dylib
    0x7fff6910a000 -     0x7fff69131fff  libsystem_malloc.dylib (283.100.5)  /usr/lib/system/libsystem_malloc.dylib
    0x7fff69132000 -     0x7fff6913fffb  libsystem_networkextension.dylib (1095.100.29)  /usr/lib/system/libsystem_networkextension.dylib
    0x7fff69140000 -     0x7fff69149ff7  libsystem_notify.dylib (241.100.2)  /usr/lib/system/libsystem_notify.dylib
    0x7fff6914a000 -     0x7fff69152fef  libsystem_platform.dylib (220.100.1)  /usr/lib/system/libsystem_platform.dylib
    0x7fff69153000 -     0x7fff6915dfff  libsystem_pthread.dylib (416.100.3)  /usr/lib/system/libsystem_pthread.dylib
    0x7fff6915e000 -     0x7fff69162ff3  libsystem_sandbox.dylib (1217.101.2)  /usr/lib/system/libsystem_sandbox.dylib
    0x7fff69163000 -     0x7fff69165fff  libsystem_secinit.dylib (62.100.2)  /usr/lib/system/libsystem_secinit.dylib
    0x7fff69166000 -     0x7fff6916dffb  libsystem_symptoms.dylib (1238.100.26)  /usr/lib/system/libsystem_symptoms.dylib
    0x7fff6916e000 -     0x7fff69184ff2  libsystem_trace.dylib (1147.100.8)  /usr/lib/system/libsystem_trace.dylib
    0x7fff69186000 -     0x7fff6918bff7  libunwind.dylib (35.4)  /usr/lib/system/libunwind.dylib
    0x7fff6918c000 -     0x7fff691c1ffe  libxpc.dylib (1738.100.39)  /usr/lib/system/libxpc.dylib

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 40
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 8046292
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=3.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.8G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework              1024K        8 
Activity Tracing                   256K        1 
CG backing stores                 1768K        6 
CG image                           568K       26 
CoreAnimation                     1596K      259 
CoreGraphics                         8K        1 
CoreImage                           40K        6 
CoreUI image data                 1432K       24 
Foundation                           4K        1 
Kernel Alloc Once                    8K        1 
MALLOC                             3.0G      561 
MALLOC guard page                   32K        8 
MALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
Mach message                        24K        3 
Memory Tag 242                      12K        1 
Memory Tag 251                      12K        1 
OpenGL GLSL                        384K        5 
STACK GUARD                         88K       22 
Stack                            146.7M       23 
Stack Guard                       56.0M        1 
VM_ALLOCATE                      216.9M      185 
VM_ALLOCATE (reserved)            32.0M        1         reserved VM address space (unallocated)
__DATA                            54.0M      562 
__DATA_CONST                        76K        4 
__FONT_DATA                          4K        1 
__GLSLBUILTINS                    5176K        1 
__LINKEDIT                       481.6M      146 
__OBJC_RO                         32.2M        1 
__OBJC_RW                         1892K        2 
__TEXT                           546.0M      522 
__UNICODE                          564K        1 
mapped file                      406.3M       53 
shared memory                     2848K       24 
===========                     =======  ======= 
TOTAL                              5.4G     2463 
TOTAL, minus reserved VM space     5.0G     2463 



Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Users/hperrett/Dropbox (Scripps Research)/Ward
> Lab/Manuscripts/Philip/LASV EMPEM/Figures
> (working)/misc/lasv_empem_monomer_fit.cxs"

Opened cryosparc_P330_J1236_001_volume_map_sharp (1).mrc z flip as #14, grid
size 540,540,540, pixel 0.725, shown at level 0.0355, step 1, values float32  
Log from Thu Jun 15 17:14:49 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Users/hperrett/Dropbox (Scripps Research)/Ward
> Lab/Manuscripts/Philip/LASV EMPEM/monoclonal_empem_FITTTTTTTTT.cxs"

Opened LASV_J777_gpc-a_csparc_reprocess_1_flip.mrc as #4, grid size
256,256,256, pixel 1.42, shown at level 0.156, step 1, values float32  
Opened cryosparc_P330_J1198_002_volume_map_sharp.mrc as #9, grid size
440,440,440, pixel 0.725, shown at level 0.052, step 1, values float32  
Opened cryosparc_P330_J1236_001_volume_map_sharp.mrc as #10, grid size
540,540,540, pixel 0.725, shown at level 0.0698, step 1, values float32  
Opened cryosparc_P330_J1235_001_volume_map_sharp.mrc as #11, grid size
540,540,540, pixel 0.725, shown at level 0.0793, step 1, values float32  
Opened cryosparc_P330_J1235_001_volume_map_sharp (1).mrc as #12, grid size
540,540,540, pixel 0.725, shown at level 0.0762, step 1, values float32  
Opened cryosparc_P330_J1236_001_volume_map_sharp (1).mrc as #13, grid size
540,540,540, pixel 0.725, shown at level 0.0467, step 1, values float32  
Opened cryosparc_P330_J1236_001_volume_map_sharp (1).mrc z flip as #14, grid
size 540,540,540, pixel 0.725, shown at level 0.0443, step 1, values float32  
Opened cryosparc_P330_J1177_006_volume_map_sharp.mrc as #17, grid size
440,440,440, pixel 0.725, shown at level 0.016, step 2, values float32  
Opened cryosparc_P330_J1177_006_volume_map_sharp.mrc z flip as #18, grid size
440,440,440, pixel 0.725, shown at level 0.0684, step 1, values float32  
Opened cryosparc_P330_J1217_005_volume_map_sharp.mrc as #19, grid size
440,440,440, pixel 0.725, shown at level 0.0608, step 1, values float32  
Opened cryosparc_P330_J1217_005_volume_map_sharp.mrc z flip as #20, grid size
440,440,440, pixel 0.725, shown at level 0.0684, step 1, values float32  
Log from Thu Jun 15 16:55:04 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Users/hperrett/Dropbox (Scripps Research)/Ward
> Lab/Manuscripts/Philip/LASV EMPEM/Figures (working)/misc/gpc-a-
> like_epitope_compare_w_2510C_and_361F.cxs"

Opened LASV_J777_gpc-a_csparc_reprocess_1_flip.mrc as #4, grid size
256,256,256, pixel 1.42, shown at level 0.156, step 1, values float32  
Log from Mon Jun 12 13:54:49 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open /Users/hperrett/Desktop/gpc-a-like_epitope_compare.cxs

Opened LASV_J777_gpc-a_csparc_reprocess_1_flip.mrc as #4, grid size
256,256,256, pixel 1.42, shown at level 0.156, step 1, values float32  
Log from Mon Jun 12 13:32:19 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open /Users/hperrett/Desktop/base_fig_gaussian.cxs format session

Opened base_1_cryosparc_P330_J561_map_sharp_zflip.mrc as #5, grid size
320,320,320, pixel 0.833, shown at level 0.154, step 2, values float32  
Opened base_2_cryosparc_P330_J622 zflip.mrc as #6, grid size 320,320,320,
pixel 0.833, shown at level 0.132, step 2, values float32  
Opened base_1_cryosparc_P330_J561_map_sharp_zflip.mrc gaussian as #7, grid
size 320,320,320, pixel 0.833, shown at level 0.092, step 1, values float32  
Opened base_1_cryosparc_P330_J561_map_sharp_zflip.mrc gaussian as #8, grid
size 320,320,320, pixel 0.833, shown at level 0.113, step 1, values float32  
Opened base_2_cryosparc_P330_J622 zflip.mrc gaussian as #9, grid size
320,320,320, pixel 0.833, shown at level 0.115, step 1, values float32  
Opened base_2_cryosparc_P330_J622 zflip.mrc gaussian as #10, grid size
320,320,320, pixel 0.833, shown at level 0.104, step 1, values float32  
Opened base_1_cryosparc_P330_J561_map_sharp_zflip.mrc gaussian 0 as #13.1,
grid size 320,320,320, pixel 0.833, shown at level 0.092, step 1, values
float32  
Opened base_1_cryosparc_P330_J561_map_sharp_zflip.mrc gaussian 1 as #13.2,
grid size 320,320,320, pixel 0.833, shown at level 0.092, step 1, values
float32  
Opened base_1_cryosparc_P330_J561_map_sharp_zflip.mrc gaussian 2 as #13.3,
grid size 320,320,320, pixel 0.833, shown at level 0.092, step 1, values
float32  
Log from Sun Jun 11 12:49:00 2023

> graphics silhouettes true

> lighting soft

UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/hperrett/Downloads/cryosparc_P330_J1157_class_00_final_volume.mrc

Opened cryosparc_P330_J1157_class_00_final_volume.mrc as #1, grid size
256,256,256, pixel 1.25, shown at level 0.0299, step 1, values float32  

> open
> /Users/hperrett/Downloads/cryosparc_P330_J1157_class_01_final_volume.mrc

Opened cryosparc_P330_J1157_class_01_final_volume.mrc as #2, grid size
256,256,256, pixel 1.25, shown at level 0.0175, step 1, values float32  

> open
> /Users/hperrett/Downloads/cryosparc_P330_J1157_class_02_final_volume.mrc

Opened cryosparc_P330_J1157_class_02_final_volume.mrc as #3, grid size
256,256,256, pixel 1.25, shown at level 0.0194, step 1, values float32  

> hide #!2 models

> hide #!3 models

> volume #1 level 0.06474

> volume #1 level 0.07504

> show #!2 models

> volume #2 level 0.07028

> hide #!1 models

> show #!3 models

> hide #!2 models

> volume #3 level 0.05485

> hide #!3 models

> show #!1 models

> open "/Users/hperrett/Downloads/cryosparc_P330_J1157_class_03_final_volume
> (1).mrc"

Opened cryosparc_P330_J1157_class_03_final_volume (1).mrc as #4, grid size
256,256,256, pixel 1.25, shown at level 0.0191, step 1, values float32  

> volume #4 level 0.0582

> hide #!1 models

> volume #4 level 0.1398

> show #!1 models

> volume #1 level 0.1231

> volume #1 level 0.05003

> hide #!1 models

> show #!2 models

> volume #2 level 0.04004

> volume #2 level 0.0233

> volume #2 level 0.09088

> hide #!2 models

> show #!3 models

> volume #3 level 0.1161

> hide #!3 models

> show #!4 models

> volume #4 level 0.1088

> volume #4 level 0.07775

> close #1-4

> open "/Users/hperrett/Dropbox (Scripps Research)/Ward
> Lab/Manuscripts/Philip/LASV EMPEM/Maps and models for
> submission/8.9F/Josiah_89F_v4.pdb"

Chain information for Josiah_89F_v4.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
H | No description available  
L | No description available  
a | No description available  
b | No description available  
c | No description available  
  

> hide atoms

> show cartoons

> select /A:187

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

93 atoms, 93 bonds, 12 residues, 1 model selected  

> select up

1786 atoms, 1842 bonds, 212 residues, 1 model selected  

> select add /C:224

1794 atoms, 1849 bonds, 213 residues, 1 model selected  

> select up

1853 atoms, 1909 bonds, 220 residues, 1 model selected  

> select up

3605 atoms, 3720 bonds, 427 residues, 1 model selected  

> select add /B:153

3613 atoms, 3727 bonds, 428 residues, 1 model selected  

> select up

3633 atoms, 3747 bonds, 431 residues, 1 model selected  

> select up

5403 atoms, 5574 bonds, 641 residues, 1 model selected  

> color sel #d0d8e0ff

> select clear

> select /c:418

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

193 atoms, 195 bonds, 23 residues, 1 model selected  

> select up

1434 atoms, 1475 bonds, 171 residues, 1 model selected  

> select add /b:412

1441 atoms, 1481 bonds, 172 residues, 1 model selected  

> select up

1599 atoms, 1640 bonds, 191 residues, 1 model selected  

> select up

2831 atoms, 2912 bonds, 337 residues, 1 model selected  

> select add /a:412

2838 atoms, 2918 bonds, 338 residues, 1 model selected  

> select up

3033 atoms, 3116 bonds, 361 residues, 1 model selected  

> select up

4215 atoms, 4335 bonds, 501 residues, 1 model selected  

> color sel #676b6fff

> select clear

> select clear

> select /H:94

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

22 atoms, 21 bonds, 3 residues, 1 model selected  

> select up

1070 atoms, 1099 bonds, 138 residues, 1 model selected  

> color sel #5c59d0ff

> select clear

> select /L:66

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

42 atoms, 42 bonds, 6 residues, 1 model selected  

> select up

803 atoms, 820 bonds, 109 residues, 1 model selected  

> color sel #4b51b3ff

> color sel #7c90dcff

> select clear

> select /H:102

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

37 atoms, 38 bonds, 4 residues, 1 model selected  

> select up

1070 atoms, 1099 bonds, 138 residues, 1 model selected  

> color sel #4b51b3ff

> select clear

> alias licorice car style protein modeh default arrows f xsect oval width 1
> thick 1

> alias licorice car style protein modeh default arrows f xsect oval width 1.5
> thick 1.5

> licorice

> preset cartoons/nucleotides ribbons/slabs

Changed 10337 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> select add /H:100M

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select add /H:100K

8 atoms, 6 bonds, 2 residues, 1 model selected  

> select add /H:100L

17 atoms, 14 bonds, 3 residues, 1 model selected  

> select add /H:100J

31 atoms, 29 bonds, 4 residues, 1 model selected  

> select add /H:100I

38 atoms, 35 bonds, 5 residues, 1 model selected  

> select add /H:100H

46 atoms, 42 bonds, 6 residues, 1 model selected  

> select add /H:100G

54 atoms, 49 bonds, 7 residues, 1 model selected  

> select add /H:100F

63 atoms, 57 bonds, 8 residues, 1 model selected  

> select add /H:100E

75 atoms, 69 bonds, 9 residues, 1 model selected  

> select add /H:100D

87 atoms, 81 bonds, 10 residues, 1 model selected  

> select add /H:100C

99 atoms, 93 bonds, 11 residues, 1 model selected  

> select add /H:100B

107 atoms, 100 bonds, 12 residues, 1 model selected  

> select add /H:100A

115 atoms, 107 bonds, 13 residues, 1 model selected  

> select add /H:100

120 atoms, 111 bonds, 14 residues, 1 model selected  

> select add /H:99

127 atoms, 117 bonds, 15 residues, 1 model selected  

> show sel atoms

> color sel byhetero

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1154 atoms, 1210 bonds, 89 residues, 1 model selected  

> show sel atoms

> color sel #efd56dff

> color sel byhetero

> color sel byhetero

> color sel bychain

> color sel #edb359ff

> color sel #efd56dff

> color sel #efd56d99

> color sel #efd56d9a

> color sel #efd56d9e

> color sel #efd56dc1

> color sel #efd56dff

> select clear

> select /A:119

8 atoms, 7 bonds, 1 residue, 1 model selected  

> show sel atoms

> color sel byhetero

> select clear

> lighting soft

> ui tool show "Side View"

> lighting simple

Drag select of 179 atoms, 51 residues, 186 bonds  

> select clear

Drag select of 864 atoms, 1018 residues, 3 pseudobonds, 904 bonds  

> select clear

Drag select of 848 atoms, 1001 residues, 3 pseudobonds, 888 bonds  

> select clear

Drag select of 700 atoms, 887 residues, 2 pseudobonds, 729 bonds  

> hide (#!1 & sel) target a

> cartoon hide (#!1 & sel)

> select /C:258

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

119 atoms, 119 bonds, 13 residues, 1 model selected  

> select up

1819 atoms, 1878 bonds, 215 residues, 1 model selected  

> select down

119 atoms, 119 bonds, 13 residues, 1 model selected  

> select clear

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> select clear

> select /a:414

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

202 atoms, 204 bonds, 24 residues, 1 model selected  

> select up

1384 atoms, 1423 bonds, 164 residues, 1 model selected  

> select add /b:316

1395 atoms, 1434 bonds, 165 residues, 1 model selected  

> select up

1542 atoms, 1583 bonds, 182 residues, 1 model selected  

> select up

2781 atoms, 2860 bonds, 330 residues, 1 model selected  

> select add /c:409

2789 atoms, 2867 bonds, 331 residues, 1 model selected  

> select up

2974 atoms, 3055 bonds, 353 residues, 1 model selected  

> select up

4215 atoms, 4335 bonds, 501 residues, 1 model selected  

> hide sel atoms

> hide sel cartoons

> select clear

Drag select of 82 atoms, 329 residues, 84 bonds  

> select clear

Drag select of 86 atoms, 382 residues, 90 bonds  

> hide sel atoms

> hide sel cartoons

> select clear

Drag select of 29 residues  

> hide sel atoms

> hide sel cartoons

> show sel atoms

> hide sel atoms

> select clear

> hide pseudobonds

> select /H:54

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /H:55

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select add /H:54

10 atoms, 8 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel byhetero

> select clear

> select /H:73

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select add /H:72

15 atoms, 13 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel byhetero

> select clear

> select /C:259

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select add /C:258

17 atoms, 15 bonds, 2 residues, 1 model selected  

> select add /C:257

28 atoms, 25 bonds, 3 residues, 1 model selected  

> select add /C:256

39 atoms, 35 bonds, 4 residues, 1 model selected  

> select add /C:255

45 atoms, 40 bonds, 5 residues, 1 model selected  

> select add /C:254

53 atoms, 47 bonds, 6 residues, 1 model selected  

> select add /C:253

65 atoms, 59 bonds, 7 residues, 1 model selected  

> select add /A:121

71 atoms, 64 bonds, 8 residues, 1 model selected  

> select add /A:120

79 atoms, 71 bonds, 9 residues, 1 model selected  

> select add /A:122

87 atoms, 78 bonds, 10 residues, 1 model selected  

> select add /A:123

92 atoms, 82 bonds, 11 residues, 1 model selected  

> select add /A:124

102 atoms, 92 bonds, 12 residues, 1 model selected  

> select add /A:125

111 atoms, 100 bonds, 13 residues, 1 model selected  

> select add /A:126

120 atoms, 108 bonds, 14 residues, 1 model selected  

> show sel atoms

> color sel byhetero

> select clear

> select add /C:253@CA

1 atom, 1 residue, 1 model selected  

> select add /C:254@CA

2 atoms, 2 residues, 1 model selected  

> select add /A:124

12 atoms, 10 bonds, 3 residues, 1 model selected  

> select add /A:123

17 atoms, 14 bonds, 4 residues, 1 model selected  

> select add /A:120

25 atoms, 21 bonds, 5 residues, 1 model selected  

> hide sel atoms

> select clear

> select /A:1214@C1

1 atom, 1 residue, 1 model selected  

> select up

14 atoms, 14 bonds, 1 residue, 1 model selected  

> select up

1786 atoms, 1842 bonds, 212 residues, 1 model selected  

> select down

14 atoms, 14 bonds, 1 residue, 1 model selected  

> select add /A:1218@C2

15 atoms, 14 bonds, 2 residues, 1 model selected  

> select up

28 atoms, 29 bonds, 2 residues, 1 model selected  

[deletd a lot to fit within ticket limits]

    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/a TYR 278 CD1  7s8h #3/a CYS 279 N                                                                                                    1.010    3.990
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/a TYR 369 CD2  7s8h #3/a CYS 385 CA                                                                                                   1.010    3.990
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/a VAL 298 C    7s8h #3/a CYS 301 SG                                                                                                   1.010    3.990
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/A GLU 76 CD    7tyv #2/A GLU 76 C                                                                                                     1.010    3.990
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/a TYR 366 CD2  7tyv #2/a TYR 366 OH                                                                                                   1.010    3.990
    7tyv #2/D SER 50 OG                                                                                                   gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/H ALA 31 O      1.010    3.990
    7tyv #2/D TYR 57 N                                                                                                    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/H ALA 53 C      1.010    3.990
    7tyv #2/D TYR 59 CE2                                                                                                  gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/L ALA 95 CA     1.010    3.990
    7tyv #2/D TYR 60 N                                                                                                    7s8h #3/B GLU 51 OE2                                                                                                   1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/a GLN 324 CG   7tyv #2/a ILE 323 C                                                                                                    1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/A TYR 94 CD2   7tyv #2/A HIS 230 CB                                                                                                   1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/A MET 96 O     7tyv #2/A LEU 84 C                                                                                                     1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/A LYS 88 CA    7s8h #3/A GLN 232 N                                                                                                    1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/A GLY 160 O    7s8h #3/A GLY 160 N                                                                                                    1.009    3.991
    7tyv #2/E ASN 33 C                                                                                                    7s8h #3/C TYR 51 CB                                                                                                    1.009    3.991
    7tyv #2/D ILE 58 CG1                                                                                                  gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/H ALA 55 O      1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/A HIS 131 CG   7s8h #3/A HIS 131 O                                                                                                    1.009    3.991
    gpc-a-like_alanine_reversion_chainname-coot-6_relax4_0012_noH_coot7_relax5_0089_noH_coot8_final.pdb #1/a GLN 331 C    7s8h #e

Change History (2)

comment:1 by pett, 2 years ago

Component: Unassigned → Graphics
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Graphics hardware encountered an error and was reset

comment:2 by Tom Goddard, 2 years ago

Resolution: → nonchimerax
Status: assigned → closed
Summary: Graphics hardware encountered an error and was reset → Graphics crash, macOS 10.15.4, Intel

Apple Intel graphics driver crash.

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