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May 14, 2025:

10:18 PM Ticket #17683 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:02 PM Ticket #17680 ('ScaledGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
5:49 PM Ticket #17682 (Convert preferences category chooser from menu to side list) created by Zach Pearson: Could we do a side category list? Would that be too much of a 90s-00s …
4:10 PM Ticket #17681 (Reading volume data: OSError: Operation canceled) created by chimerax-bug-report@…: […]
3:45 PM Ticket #17680 ('ScaledGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
11:37 AM Ticket #17679 (Feedback & Issue with ChimeraX1.9) created by shantanukhatri007@…: […] Screenshot 2025-05-14 235544.png …
11:36 AM Ticket #17676 (Device loss detected in Present()) closed by Tom Goddard: nonchimerax
11:35 AM Ticket #17678 (Find Cavities crash) closed by Eric Pettersen: duplicate: Hi Elizabeth, Thanks for reporting this problem. It was fixed about …
11:29 AM Ticket #17677 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Eric Pettersen: limitation: Remote display
11:25 AM Ticket #17675 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: duplicate
11:22 AM Ticket #17674 (chimerax.modeller missing) closed by Eric Pettersen: can't reproduce: Modeller is indeed missing from the list of installed packages in the …
11:16 AM Ticket #17673 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard: nonchimerax: Probably graphics driver bug, but could be machine only has 4 GB of …
11:14 AM Ticket #17668 (measure center: Array argument has non-numeric values) closed by Tom Goddard: duplicate: This bug with the measure center command is fixed in the ChimeraX …
11:10 AM Ticket #17672 (Safesave: file missing) closed by Eric Pettersen: duplicate: Duplicate of #16631
11:07 AM Ticket #17671 (Crash moving window between screens) closed by Eric Pettersen: duplicate
11:05 AM Ticket #17669 (Crash using open/save dialog) closed by Tom Goddard: duplicate: That graphics/view.py in the tracebacks suggests it was drawing the …
11:05 AM Ticket #17670 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: German locale. Crash accessing a structure property during redraw.
10:59 AM Ticket #17663 (Graphics hardware encountered an error and was reset:) closed by Tom Goddard: nonchimerax: This is a known ChimeraX crash. The bug report panel now tells you …
10:39 AM Ticket #17667 (Modeller web service) closed by Eric Pettersen: not a bug: Hi Bhargy, The backend web-service infrastructure that the Modeller …
10:30 AM Ticket #17666 (Error setting cavity color) closed by Eric Pettersen: duplicate: Duplicate of #16362
9:53 AM Ticket #17678 (Find Cavities crash) created by efishman1006@…: […]
9:43 AM Ticket #17677 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…: […]
9:13 AM Ticket #17665 (Unknown error) closed by Eric Pettersen: can't reproduce
8:41 AM Ticket #17676 (Device loss detected in Present()) created by chimerax-bug-report@…: […]
8:32 AM Ticket #17675 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]
6:42 AM Ticket #17674 (chimerax.modeller missing) created by chimerax-bug-report@…: […]
5:33 AM Ticket #17673 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…: […]
3:54 AM Ticket #17672 (Safesave: file missing) created by chimerax-bug-report@…: […]
12:33 AM Ticket #17671 (Crash moving window between screens) created by chimerax-bug-report@…: […]

May 13, 2025:

11:09 PM Ticket #17670 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
11:00 PM Ticket #17669 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
10:42 PM Ticket #17668 (measure center: Array argument has non-numeric values) created by blz208813@…: […]
9:39 PM Ticket #17667 (Modeller web service) created by bhargy.sharma@…: […]
8:59 PM Ticket #17666 (Error setting cavity color) created by chimerax-bug-report@…: […]
8:42 PM Ticket #17665 (Unknown error) created by chimerax-bug-report@…: […]
6:29 PM Ticket #17664 (superqt TypeError: 'float' object cannot be interpreted as an integer) created by chimerax-bug-report@…: […]
6:14 PM Ticket #17663 (Graphics hardware encountered an error and was reset:) created by glander@…: […]
4:14 PM Ticket #17519 (Show non-amino/nucleic chains initially) closed by Eric Pettersen: fixed: Daily build only. Fix: …
2:47 PM Ticket #17661 (Opening IHM model "open 8zza": No mmCIF models found) closed by Tom Goddard: fixed: In ChimeraX 1.10 or daily builds Use "open 8zza from pdbihm" or "open …
1:25 PM Ticket #17657 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by Eric Pettersen: duplicate
1:23 PM Ticket #17656 (Distance decimal place is negative) closed by Eric Pettersen: can't reproduce
12:28 PM Ticket #17662 (Segmentations: 'chimerax' misspelled) created by chimerax-bug-report@…: […]
11:51 AM Ticket #17655 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
10:49 AM Ticket #17661 (Opening IHM model "open 8zza": No mmCIF models found) created by goddard@…: […]
10:24 AM Ticket #17651 (Unknown OpenGL version) closed by Tom Goddard: nonchimerax: OpenGL driver problem.
10:03 AM Ticket #17654 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
10:02 AM Ticket #17660 (Crash opening mmCIF) created by chimerax-bug-report@…: […]
9:53 AM Ticket #17653 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce: Doesn't really line up with the log, where the last command is "close".
9:42 AM Ticket #17649 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by Eric Pettersen: duplicate: Duplicate of #17637
9:40 AM Ticket #17648 (Crash handling event) closed by Eric Pettersen: can't reproduce: There were also some of the Greg shape-drawing bugs in the log, but I …
9:25 AM Ticket #17645 (traceback closing and opening a model with Boltz tool present) closed by Eric Pettersen: duplicate: Indeed, should work in today's builds.
9:24 AM Ticket #17644 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Eric Pettersen: limitation: Remote display
9:21 AM Ticket #17643 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce
9:11 AM Ticket #17659 (Crash opening mmCIF) created by chimerax-bug-report@…: […]
8:41 AM Ticket #17658 (Segmentations: volume_viewer is None) created by chimerax-bug-report@…: […]
8:26 AM Ticket #17657 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by chimerax-bug-report@…: […]
8:01 AM Ticket #17656 (Distance decimal place is negative) created by chimerax-bug-report@…: […]
6:02 AM Ticket #17655 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
6:00 AM Ticket #17654 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
3:48 AM Ticket #17653 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
2:55 AM Ticket #17652 (libchutil on MacOS) created by Tristan Croll: […]
2:10 AM Ticket #17651 (Unknown OpenGL version) created by chimerax-bug-report@…: […]
1:11 AM Ticket #17650 (XMAS: KeyError: 'PSMID') created by chimerax-bug-report@…: […]
12:33 AM Ticket #17649 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by chimerax-bug-report@…: […]
12:32 AM Ticket #17648 (Crash handling event) created by chimerax-bug-report@…: […]

May 12, 2025:

11:48 PM Ticket #17647 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
9:51 PM Ticket #17646 (Problems with imports on Linux) created by chimerax-bug-report@…: […]
6:06 PM Ticket #17641 (Qt/OpenGL problems when ChimeraX starts on (sleeping?) display) closed by Tom Goddard: nonchimerax: It looks like ChimeraX tried to start maybe when the display was …
6:05 PM Ticket #17645 (traceback closing and opening a model with Boltz tool present) created by Elaine Meng: […]
4:59 PM Ticket #17644 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…: […]
4:54 PM Ticket #17643 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
3:51 PM Ticket #17642 (Prevent reporting of useless bug reports) created by Tom Goddard: In the 1.10 daily builds we reenabled reporting of Windows crashes. …
3:46 PM Dev2025-5-12 edited by Tom Goddard: (diff)
3:03 PM Dev2025-5-12 created by Tom Goddard
3:02 PM DeveloperMeetings edited by Tom Goddard: (diff)
2:58 PM ChangeLog edited by Eric Pettersen: (diff)
2:53 PM Ticket #17637 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by Eric Pettersen: fixed: Hi Manjila, Thanks for reporting this problem. I have just committed …
2:12 PM Ticket #17639 ('BoltzPredictionGUI' object has no attribute '_save_option_defaults') closed by Tom Goddard: fixed
2:04 PM Ticket #17641 (Qt/OpenGL problems when ChimeraX starts on (sleeping?) display) created by Tony Schaefer: […]
2:00 PM Ticket #17638 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by Eric Pettersen: duplicate
1:59 PM Ticket #17631 (Crash in QCursor.pos()) closed by Tom Goddard: can't reproduce: Crashed asking Qt the cursor position.
1:57 PM Ticket #17630 (glBufferData: out of memory) closed by Tom Goddard: nonchimerax: OpenGL out of memory allocating about 1.5 Mbytes at startup for …
1:39 PM Ticket #17625 (Crash in Qt event loop during AlphaFold prediction) closed by Tom Goddard: can't reproduce: This ChimeraX crash report shows the crash in the Qt window toolkit …
1:33 PM Ticket #17636 (Crash handling event) closed by Eric Pettersen: can't reproduce
1:30 PM Ticket #17634 (Crash in garbage collection) closed by Eric Pettersen: duplicate
1:27 PM Ticket #17633 (Crash moving window between screens) closed by Eric Pettersen: duplicate
1:19 PM Ticket #17629 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Eric Pettersen: can't reproduce
1:18 PM Ticket #17628 (Crash using open dialog) closed by Eric Pettersen: can't reproduce
1:09 PM Ticket #17627 (Crash in garbage collection) closed by Eric Pettersen: duplicate
1:05 PM Ticket #17624 (Could not create OpenGL context) closed by Eric Pettersen: limitation: Remote display
1:04 PM Ticket #17623 (Crash on exit destroying OpenGL contexts) closed by Eric Pettersen: duplicate: From before the code was fixed
12:00 PM Ticket #17622 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
12:00 PM Ticket #17640 (Tug mouse mode: There is no registered Platform called "OpenCL") closed by Tom Goddard: fixed: Fixed. We switched to using the new PyPi OpenMM and our code was …
11:59 AM Ticket #17621 (Add Charge: boron) closed by Eric Pettersen: limitation: Hi Nisha, The underlying AMBER program that Add Charge uses …
11:55 AM Ticket #17640 (Tug mouse mode: There is no registered Platform called "OpenCL") created by goddard@…: […]
11:51 AM Ticket #17639 ('BoltzPredictionGUI' object has no attribute '_save_option_defaults') created by howell@…: […]
11:46 AM Ticket #17620 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce: With standard 1hdq and pubchem:6274 (histidine), no crash.
11:28 AM Ticket #17619 (Crash using open dialog) closed by Eric Pettersen: can't reproduce
11:05 AM Ticket #17638 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by manjila.bhusalp1@…: […]
11:04 AM Ticket #17637 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by manjila.bhusalp1@…: […]
10:48 AM Ticket #17618 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce: Probably a bad PDB file; don't know how that causes chem_group to crash
10:46 AM Ticket #17617 (Maestro: KeyError: 'i_m_residue_number') closed by Eric Pettersen: duplicate: Duplicate of #9215
10:44 AM Ticket #17616 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:42 AM Ticket #17615 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
10:36 AM Ticket #17582 (Problem saving session after adding trajectory coordinates) closed by Eric Pettersen: nonchimerax: Glad you worked it out. --Eric
10:23 AM Ticket #17613 (Crash in event loop) closed by Eric Pettersen: can't reproduce
10:22 AM Ticket #17612 (Crash in event loop) closed by Eric Pettersen: can't reproduce
10:21 AM Ticket #17611 (Crash in event loop) closed by Eric Pettersen: can't reproduce
10:20 AM Ticket #17610 (Crash using open dialog) closed by Eric Pettersen: can't reproduce
9:31 AM Ticket #17636 (Crash handling event) created by chimerax-bug-report@…: […]
8:55 AM ChangeLog edited by Elaine Meng: (diff)
8:19 AM Ticket #17635 (pyproject.toml: more flexible library name search on Windows) created by Tristan Croll: […]
8:01 AM Ticket #17634 (Crash in garbage collection) created by chimerax-bug-report@…: […]
7:31 AM Ticket #17633 (Crash moving window between screens) created by chimerax-bug-report@…: […]
7:25 AM Ticket #17632 (pyproject.toml: Windows libraries location) created by Tristan Croll: […]
7:18 AM Ticket #17631 (Crash in QCursor.pos()) created by chimerax-bug-report@…: […]
7:17 AM Ticket #17630 (glBufferData: out of memory) created by chimerax-bug-report@…: […]
6:58 AM Ticket #17629 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…: […]
6:06 AM Ticket #17628 (Crash using open dialog) created by chimerax-bug-report@…: […]
5:26 AM Ticket #17627 (Crash in garbage collection) created by chimerax-bug-report@…: […]
4:42 AM Ticket #17626 (ArtiaX: glTexImage3D: out of memory) created by pavol.harar@…: […]
4:26 AM Ticket #17625 (Crash in Qt event loop during AlphaFold prediction) created by zryzry0801@…: […]
3:34 AM Ticket #17624 (Could not create OpenGL context) created by chimerax-bug-report@…: […]
12:57 AM Ticket #17623 (Crash on exit destroying OpenGL contexts) created by chimerax-bug-report@…: […]

May 11, 2025:

11:08 PM Ticket #17622 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
11:06 AM Ticket #17621 (Add Charge: boron) created by nishaofficial19@…: […]
10:16 AM Ticket #17620 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
10:15 AM Ticket #17619 (Crash using open dialog) created by chimerax-bug-report@…: […]
9:42 AM Ticket #17618 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:04 AM Ticket #17617 (Maestro: KeyError: 'i_m_residue_number') created by chimerax-bug-report@…: […]

May 10, 2025:

11:49 PM Ticket #17616 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:00 PM Ticket #17615 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
11:06 AM Ticket #17614 (DSSP in ChimeraX) created by r.joosten@…: […]
4:52 AM Ticket #17613 (Crash in event loop) created by chimerax-bug-report@…: […]
4:41 AM Ticket #17612 (Crash in event loop) created by chimerax-bug-report@…: […]
4:19 AM Ticket #17611 (Crash in event loop) created by chimerax-bug-report@…: […]

May 9, 2025:

8:27 PM Ticket #17610 (Crash using open dialog) created by chimerax-bug-report@…: […]
6:50 PM Ticket #17609 (Add a Stop button the the Boltz prediction tool) closed by Tom Goddard: fixed: Done. Stop button only appears when a prediction starts and …
6:47 PM Ticket #17609 (Add a Stop button the the Boltz prediction tool) created by goddard@…: […]
6:25 PM Ticket #17608 (Make a Boltz gui single save default options button) closed by Tom Goddard: fixed: Done in 1.10. Save default options saves all the setting in the Boltz …
6:18 PM Ticket #17608 (Make a Boltz gui single save default options button) created by goddard@…: […]
5:56 PM Ticket #17605 (Open temporary Chrome download file: UnicodeDecodeError) closed by Eric Pettersen: not a bug
5:42 PM Ticket #17607 (Include non-main atoms in kvfinder receptor) created by alexander.muhleip@…: I am checking out the new kvfinder tool in ChimeraX. I was wondering …
4:39 PM Ticket #15942 (Restore session: LZ4F_decompress failed with code: ...) closed by Greg Couch: fixed: Nothing we can do, so eliminated the traceback when this occurs.
4:17 PM Ticket #17606 (Install Boltz with the correct CUDA version) created by Tom Goddard: Currently the Boltz tool installs the PyPi Boltz which on Windows …
3:51 PM Ticket #17605 (Open temporary Chrome download file: UnicodeDecodeError) created by chimerax-bug-report@…: […]
1:45 PM Ticket #17602 (color different chain using terminal and looping) closed by Eric Pettersen: not a bug: Hi Jinchao, The "color" commands in your script are wrong because …
1:30 PM Ticket #17604 (Don't spam the file history when opening a cluster in the similar ...) closed by Tom Goddard: fixed: Fixed. Structure is only added to the file history if just one …
1:26 PM Ticket #17604 (Don't spam the file history when opening a cluster in the similar ...) created by goddard@…: […]
1:15 PM Ticket #17603 (Open all structures for a cluster in the similar structures tool) closed by Tom Goddard: fixed: Added to ChimeraX 1.10 and daily build. I added an entry to the …
1:09 PM Ticket #17603 (Open all structures for a cluster in the similar structures tool) created by Kliment.Verba@…: Klim Verba wants to open the similar structures for a specific …
11:43 AM Ticket #17602 (color different chain using terminal and looping) created by jg0428@…: […]
11:37 AM Ticket #17601 (Make boltz results directory use [name] instead of [N]) closed by Tom Goddard: fixed: Done in 1.10. For compatibility with older boltz tool where users may …
11:25 AM Ticket #17601 (Make boltz results directory use [name] instead of [N]) created by meng@…: When specifying the results directory in the Boltz tool Options pane …
10:19 AM Ticket #17591 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: What we know about this ChimeraX crash was described in the bug report …
10:04 AM Ticket #17600 (Crash in chem_group on Windows) closed by Eric Pettersen: duplicate
10:03 AM Ticket #17599 (Crash in chem_group on Windows) closed by Eric Pettersen: duplicate
9:53 AM Ticket #17597 (remotecontrol: BrokenPipeError) closed by Eric Pettersen: can't reproduce
9:50 AM Ticket #17596 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce
9:46 AM Ticket #17592 (Crash using menus) closed by Eric Pettersen: can't reproduce
9:43 AM Ticket #17590 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:41 AM Ticket #17589 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
9:38 AM Ticket #17588 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
9:36 AM Ticket #17587 (Crash moving window between screens) closed by Eric Pettersen: duplicate
7:48 AM Ticket #17600 (Crash in chem_group on Windows) created by aishamatadar005@…: […]
4:30 AM Ticket #17599 (Crash in chem_group on Windows) created by aishamatadar005@…: […]
3:30 AM Ticket #17598 (Crash in chem_group on Windows) created by aishamatadar005@…: […] H bonds.txt
2:27 AM Ticket #17597 (remotecontrol: BrokenPipeError) created by chimerax-bug-report@…: […]

May 8, 2025:

10:14 PM Ticket #17596 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
7:05 PM Ticket #17595 (boltz dialog uses "directory" keyword but option is "resultsDirectory") closed by Tom Goddard: fixed: Fixed in 1.10 release and daily build. Oops. I guess I renamed that …
6:55 PM Ticket #17595 (boltz dialog uses "directory" keyword but option is "resultsDirectory") created by Elaine Meng: Trying to specify a nondefault directory in the Boltz dialog options …
5:34 PM Ticket #17594 (Use a ChimeraX fork of the Boltz github repository to improve Boltz ...) created by Tom Goddard: It might be useful to have ChimeraX Boltz install use a fork of the …
5:25 PM Ticket #16868 (AtomicShapeDrawing selection sometimes inaccurate) closed by Greg Couch: fixed: Shapes added with selected atoms will start out selected
5:05 PM Ticket #16558 (Cannot 'pip install pyKVFinger') closed by Zach Pearson: fixed: Works as of some updates from the kvfinder team.
5:01 PM Ticket #17549 (Crash opening mmCIF) closed by Greg Couch: fixed: Went ahead and made changes to make this more robust.
4:42 PM Ticket #17524 (Bad version string; slow failure on dependency mismatch) closed by Zach Pearson: fixed: Thank you for investigating/reporting this. I was looking around Plato …
4:37 PM Ticket #17357 (pip install failure ("invalid requirement")) closed by Zach Pearson: fixed: I deleted pyKVFinder out of my 1.11 build user site directory and …
4:32 PM Ticket #17593 (Boltz 1.0 install fails on Mac) closed by Tom Goddard: fixed: Fixed in 1.10. Pinned Boltz install to use version 0.4.1. Also …
4:31 PM Ticket #17578 ("Webservices job finished" message issued prematurely and multiple times) closed by Zach Pearson: fixed: The wrong indentation made this run on every invocation of …
4:21 PM Ticket #17593 (Boltz 1.0 install fails on Mac) created by goddard@…: […]
3:48 PM Ticket #17592 (Crash using menus) created by chimerax-bug-report@…: […]
3:06 PM Ticket #17591 (Crash on Mac waking from sleep) created by chkaiser@…: […]
2:02 PM Ticket #17580 (alphafold pae: JSONDecodeError) closed by Tom Goddard: fixed: Fixed. The user tried to open the alphafold database settings json …
1:49 PM Ticket #17590 (Crash in event loop) created by chimerax-bug-report@…: […]
1:39 PM Ticket #17589 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
12:55 PM Ticket #17588 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
12:10 PM Ticket #17579 (Save movie: No space left on device) closed by Tom Goddard: limitation: While it would be nicer to omit tracebacks and say "out of disk space" …
12:02 PM Ticket #17586 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
12:01 PM Ticket #17585 (Crash moving window between screens) closed by Eric Pettersen: duplicate
12:01 PM Ticket #17584 (Crash moving window between screens) closed by Eric Pettersen: duplicate
12:00 PM Ticket #17583 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
11:52 AM Ticket #17587 (Crash moving window between screens) created by chimerax-bug-report@…: […]
10:20 AM Ticket #17586 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:28 AM Ticket #17585 (Crash moving window between screens) created by chimerax-bug-report@…: […]
8:09 AM Ticket #17584 (Crash moving window between screens) created by chimerax-bug-report@…: […]
7:37 AM Ticket #17583 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:13 AM Ticket #17582 (Problem saving session after adding trajectory coordinates) created by alexandra.zahradnikova@…: […]
3:51 AM Ticket #17581 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by chimerax-bug-report@…: […]
2:36 AM Ticket #17580 (alphafold pae: JSONDecodeError) created by chimerax-bug-report@…: […]

May 7, 2025:

5:36 PM Ticket #17277 (D-amino acids assigned wrong atom types) closed by Eric Pettersen: fixed: Fix: …
5:22 PM Ticket #17579 (Save movie: No space left on device) created by chimerax-bug-report@…: […]
3:50 PM Ticket #17576 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
3:49 PM Ticket #17575 (Similar Structures / foldseek errors) closed by Tom Goddard: duplicate: These Foldseek errors were fixed in the daily build several months ago.
12:11 PM Ticket #17578 ("Webservices job finished" message issued prematurely and multiple times) created by Eric Pettersen: […]
9:24 AM Ticket #17577 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:21 AM Ticket #17574 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: From before the fix went in
9:19 AM Ticket #17571 (Problem restoring StructureSeq from session) closed by Eric Pettersen: can't reproduce
2:03 AM Ticket #17577 (Crash in event loop) created by chimerax-bug-report@…: […]
12:30 AM Ticket #5319 (bundle_info.xml needs a doctype) closed by Greg Couch: wontfix: Moving to pyproject.toml files.
12:09 AM Ticket #17576 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

May 6, 2025:

8:50 PM Ticket #17575 (Similar Structures / foldseek errors) created by chimerax-bug-report@…: […]
7:50 PM Ticket #17574 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
7:31 PM Ticket #17573 (Make boltz install pytorch with cuda support on Windows with nvidia ...) created by Tom Goddard: Currently the boltz install command will install boltz which has a …
7:06 PM Ticket #17572 (Make Boltz use Nvidia GPU on Windows if available) closed by Tom Goddard: fixed: Done. I made the boltz predict command check that torch has cuda …
7:02 PM Ticket #17572 (Make Boltz use Nvidia GPU on Windows if available) created by Tom Goddard: If Boltz has torch installed with cuda support and the user has Nvidia …
5:50 PM Ticket #17571 (Problem restoring StructureSeq from session) created by chimerax-bug-report@…: […]
1:34 PM Ticket #17527 (pyproject.toml does not check existence of source files) closed by Zach Pearson: fixed: OK, I updated bundle builder so that if it encounters a glob like …
1:20 PM Ticket #17565 (Mac ChimeraX build fails on spacenavigator) closed by Zach Pearson: fixed: You can now put 'optional = true' in [tool.chimerax.extension.foo] …
12:51 PM Ticket #17564 (Don't report known crash if no email provided) closed by Tom Goddard: fixed: Fixed in ChimeraX 1.10. If user presses Submit button on bug report …
12:46 PM Ticket #17570 (Test of crash reporter with known crash.) closed by Tom Goddard: not a bug: Seems to be working.
12:45 PM Ticket #17570 (Test of crash reporter with known crash.) created by goddard@…: […]
12:44 PM Ticket #17569 (Testing anonymous crash reporting for not-known crash.) closed by Tom Goddard: not a bug
12:43 PM Ticket #17568 (Test of crash reporter for known crashes.) closed by Tom Goddard: not a bug
12:40 PM Ticket #17567 (Test of crash reporter for known crashes) closed by Tom Goddard: not a bug
12:39 PM Ticket #17569 (Testing anonymous crash reporting for not-known crash.) created by chimerax-bug-report@…: […]
12:29 PM Ticket #17568 (Test of crash reporter for known crashes.) created by chimerax-bug-report@…: […]
12:24 PM Ticket #17567 (Test of crash reporter for known crashes) created by chimerax-bug-report@…: […]
12:22 PM Ticket #17566 (Testing crash reporter) closed by Tom Goddard: not a bug
12:21 PM Ticket #17566 (Testing crash reporter) created by chimerax-bug-report@…: […]
11:39 AM Ticket #17563 (Crash moving window between screens) closed by Tom Goddard: duplicate: Duplicate of #17562, same reporter.
11:38 AM Ticket #17562 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX bug report panel explained what we know about this crash …
11:34 AM Ticket #17565 (Mac ChimeraX build fails on spacenavigator) created by Tom Goddard: Building ChimeraX on a Mac (make build-from-scratch) now fails if …
11:02 AM Ticket #17559 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: duplicate
10:59 AM Ticket #17564 (Don't report known crash if no email provided) created by Tom Goddard: In ChimeraX 1.9 we had crash reporter detect known crashes and report …
10:55 AM Ticket #17558 (Crash moving window between screens) closed by Eric Pettersen: duplicate
10:28 AM Ticket #17556 (Crash in Bug Reporter startup: No space left on device) closed by Tom Goddard: limitation: As the messages say "No space left on device". If they don't …
10:23 AM Ticket #17563 (Crash moving window between screens) created by mrafiq@…: […]
10:01 AM Ticket #17562 (Crash on Mac waking from sleep) created by mrafiq@…: […]
9:58 AM Ticket #17561 (blob recognize: user provided file name instead of model ID) created by chimerax-bug-report@…: […]
6:51 AM Ticket #17560 (QPainter::begin: Paint device returned engine == 0, type: 2) created by chimerax-bug-report@…: […]
12:59 AM Ticket #17559 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]

May 5, 2025:

11:38 PM Ticket #17558 (Crash moving window between screens) created by chimerax-bug-report@…: […]
11:16 PM Ticket #15814 (ToolInstance.bundle_info is None) closed by Greg Couch: fixed: I believe Zach fixed this already.
11:14 PM Ticket #17557 (SEQCROW: 'Session' object has no attribute 'log') created by ud21003@…: […] GDOTHH.xyz
11:03 PM Ticket #17556 (Crash in Bug Reporter startup: No space left on device) created by chimerax-bug-report@…: […]
6:35 PM Ticket #17545 (Ribbon break at PTR) closed by Eric Pettersen: fixed: The PDB file was helpful and I have fixed the problem. PDB files …
6:31 PM Ticket #17555 (Optimize Boltz predictions for large structures) created by Tom Goddard: Boltz runs out of memory or takes a very long time predicting …
5:24 PM Ticket #16547 (Save X3D failure saving 2D labels) closed by Greg Couch: fixed: Fixed was easier that I expected. It will be in the next daily build.
4:55 PM Ticket #17554 (Test crash) closed by Eric Pettersen: not a bug: Crash via os.abort() having used open dialog once and save dialog …
4:54 PM Ticket #17553 (Test crash) closed by Eric Pettersen: not a bug: Crash via os.abort having used open dialog once. Still looks fine.
4:53 PM Ticket #17552 (Test crash) closed by Eric Pettersen: not a bug: Crashed via os.abort() with no preceding activity -- looks fine.
4:48 PM Ticket #17554 (Test crash) created by Eric Pettersen: […]
4:47 PM Ticket #17553 (Test crash) created by Eric Pettersen: […]
4:45 PM Ticket #17552 (Test crash) created by Eric Pettersen: […]
4:30 PM Dev2025-5-5 edited by Tom Goddard: (diff)
3:31 PM Ticket #17551 (RFE: label residues with color-coded grid of column prevalences from ...) created by Elaine Meng: Idea is to label residues with color-coded grids like we already have …
2:58 PM Dev2025-5-5 edited by Tom Goddard: (diff)
2:58 PM Dev2025-5-5 edited by Tom Goddard: (diff)
2:56 PM Dev2025-5-5 edited by Tom Goddard: (diff)
2:56 PM DeveloperMeetings edited by Tom Goddard: (diff)
2:52 PM Ticket #17550 (Improve Boltz structure prediction usability) created by Tom Goddard: I added a Boltz structure prediction tool to ChimeraX described here …
2:29 PM Ticket #16690 (Should ChimeraX structure prediction focus on Boltz-1, Chai-1, ...) closed by Tom Goddard: fixed: I made a Boltz-1 prediction tool in ChimeraX that installs Boltz on …
2:22 PM Ticket #17548 (Shader errors) closed by Tom Goddard: nonchimerax: Probably a graphics error, although the Windows Error code suggest …
2:06 PM Ticket #17547 (Segmentation cursor is None) closed by Eric Pettersen: duplicate: Duplicate of #17004
2:05 PM Ticket #17546 (Segmentation cursor is None) closed by Eric Pettersen: duplicate: Duplicate of #17004
12:55 PM Ticket #17542 (Measure center: Array argument has non-numeric values) closed by Tom Goddard: fixed: Fixed. The "measure center #21" command on a map gave this error …
11:03 AM Ticket #17549 (Crash opening mmCIF) created by khusema@…: […]
10:57 AM Ticket #17502 (libtheora is not installable) closed by Greg Couch: fixed: Updated package requirements for both Ubuntu and Red hat.
10:53 AM Ticket #17544 (Bad PDB file) closed by Eric Pettersen: not a bug
10:51 AM Ticket #17543 (Crash in event loop after "lighting soft") closed by Eric Pettersen: can't reproduce
10:46 AM Ticket #17541 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:03 AM Ticket #17548 (Shader errors) created by chimerax-bug-report@…: […]
8:13 AM Ticket #17547 (Segmentation cursor is None) created by chimerax-bug-report@…: […]
8:13 AM Ticket #17546 (Segmentation cursor is None) created by chimerax-bug-report@…: […]
6:42 AM Ticket #17545 (Ribbon break at PTR) created by mukundan.ragavan@…: […] PTR.png
6:25 AM Ticket #17544 (Bad PDB file) created by chimerax-bug-report@…: […]

May 4, 2025:

11:57 PM Ticket #17543 (Crash in event loop after "lighting soft") created by chimerax-bug-report@…: […]
1:36 PM Ticket #17542 (Measure center: Array argument has non-numeric values) created by zg2234@…: […]

May 3, 2025:

2:44 AM Ticket #17541 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

May 2, 2025:

5:39 PM Ticket #17540 (Crash accessing StructureSeq.structure) closed by Eric Pettersen: duplicate: Duplicate of #17013
5:19 PM Ticket #17539 (Crash in event loop under remote control) closed by Eric Pettersen: can't reproduce
5:15 PM Ticket #17540 (Crash accessing StructureSeq.structure) created by chimerax-bug-report@…: […]
2:29 PM Ticket #17539 (Crash in event loop under remote control) created by chimerax-bug-report@…: […]
2:27 PM DeveloperMeetings edited by Greg Couch: (diff)
11:46 AM Ticket #17538 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce
10:51 AM Ticket #17538 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
9:10 AM Ticket #17537 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:03 AM Ticket #17536 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: using pyKVFinder 0.7.1
8:58 AM Ticket #17535 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: 1.7.1, but still conceivably fixed by that same change
8:55 AM Ticket #17534 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: From before the fix for this went in.
8:52 AM Ticket #17533 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:50 AM Ticket #17532 (Crash de-iconifying from dock) closed by Eric Pettersen: can't reproduce
6:56 AM Ticket #17537 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:44 AM Ticket #17536 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
2:23 AM Ticket #17535 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
1:28 AM Ticket #17534 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]

May 1, 2025:

9:57 PM Ticket #17533 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:54 PM Ticket #17532 (Crash de-iconifying from dock) created by chimerax-bug-report@…: […]
5:48 PM Ticket #17529 (Qt thread/timer crash after (much) earlier Boltz error) closed by Tom Goddard: can't reproduce: The crash looks unrelated to Boltz and is caused by use of Qt in a …
5:09 PM Ticket #17531 (Crash moving window between screens) closed by Tom Goddard: duplicate: This ChimeraX crash is from a Qt window toolkit bug on Mac with …
4:55 PM Ticket #17530 (glViewport: invalid enumerant) closed by Tom Goddard: nonchimerax: Defective graphics. The same user reported this yesterday.
4:26 PM Ticket #17528 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
4:13 PM Ticket #17525 (Crash in Qt event loop after opening EMDB entry) closed by Tom Goddard: can't reproduce: No indication of why it crashed.
4:11 PM Ticket #17520 (cartoon style #1 worm true) closed by Tom Goddard: fixed: Fixed. The worm option (true or false) to the cartoon style command …
4:01 PM Ticket #17523 (Similar Structures: self.results is None) closed by Eric Pettersen: duplicate: Duplicate of #16698
1:46 PM Ticket #17531 (Crash moving window between screens) created by pngoi@…: […]
1:26 PM Ticket #17522 ("graphics quality" → out of memory) closed by Tom Goddard: limitation: Your graphics quality command requests 750 bond triangles, ribbon …
12:00 PM Ticket #17530 (glViewport: invalid enumerant) created by chimerax-bug-report@…: […]
11:33 AM Ticket #17529 (Qt thread/timer crash after (much) earlier Boltz error) created by chimerax-bug-report@…: […]
11:00 AM Ticket #17521 (Crash showing status) closed by Eric Pettersen: can't reproduce: Version 1.3 (release candidate even!)
9:34 AM Ticket #17528 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:23 AM Ticket #17527 (pyproject.toml does not check existence of source files) created by Tristan Croll: […]
6:54 AM Ticket #17526 (MemoryError/XMLSyntaxError opening session files) created by nadine.hellmold@…: […]
6:43 AM Ticket #17525 (Crash in Qt event loop after opening EMDB entry) created by chimerax-bug-report@…: […]
6:35 AM Ticket #17524 (Bad version string; slow failure on dependency mismatch) created by Tristan Croll: […] pyproject.toml
1:43 AM Ticket #17523 (Similar Structures: self.results is None) created by chimerax-bug-report@…: […]
12:36 AM Ticket #17522 ("graphics quality" → out of memory) created by saverio.lemme@…: […]

Apr 30, 2025:

10:05 PM Ticket #17521 (Crash showing status) created by chimerax-bug-report@…: […]
6:38 PM Ticket #17520 (cartoon style #1 worm true) created by ddrichma@…: […]
10:03 AM Ticket #17514 (Crash opening mmCIF) closed by Greg Couch: duplicate: Fixed in daily build.
9:59 AM Ticket #17500 (Crash in chem_group on Windows) closed by Eric Pettersen: fixed: I'm glad to hear that the latest version works for you. --Eric
9:57 AM Ticket #17366 (ChimeraX1.9 problem) closed by Eric Pettersen: fixed: That's great! --Eric
9:39 AM Ticket #17518 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: duplicate
9:38 AM Ticket #17517 (Crash at startup) closed by Eric Pettersen: can't reproduce: Looks like remote display
9:37 AM Ticket #17516 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce
9:23 AM Ticket #17515 (Error setting cavity color) closed by Eric Pettersen: duplicate: Duplicate of #16362
8:03 AM Ticket #17519 (Show non-amino/nucleic chains initially) created by Tristan Croll: […]
5:32 AM Ticket #17518 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]

Apr 29, 2025:

10:44 PM Ticket #17517 (Crash at startup) created by chimerax-bug-report@…: […]
4:44 PM Ticket #17516 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
2:37 PM ChangeLog edited by Elaine Meng: (diff)
1:35 PM Ticket #17515 (Error setting cavity color) created by chimerax-bug-report@…: […]
1:23 PM ChangeLog edited by Elaine Meng: (diff)
1:21 PM Ticket #17514 (Crash opening mmCIF) created by chimerax-bug-report@…: […] output.cif
11:27 AM Ticket #17513 (glClearColor: invalid enumerant) closed by Tom Goddard: nonchimerax: ChimeraX is not working on your laptop because the graphics driver has …
10:37 AM Ticket #17513 (glClearColor: invalid enumerant) created by devbrat.phd@…: […]
10:23 AM Ticket #17508 (Crash restoring "xr true" session) closed by Tom Goddard: duplicate: Duplicate of #17507
10:14 AM 2025-5-1 created by Tom Goddard
10:13 AM Dev2025-5-5 created by Tom Goddard
10:12 AM Dev2025-4-28 edited by Tom Goddard: (diff)
10:11 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:09 AM 2025-4-24 edited by Tom Goddard: (diff)
10:06 AM Dev2025-4-28 edited by Tom Goddard: (diff)
9:29 AM Ticket #17512 (Crash moving window between screens) closed by Eric Pettersen: duplicate
9:28 AM Ticket #17511 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:26 AM Ticket #17509 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: duplicate
9:16 AM Ticket #17505 (Crash saving PDB file) closed by Eric Pettersen: can't reproduce
7:43 AM Ticket #17512 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:04 AM Ticket #17511 (Crash in event loop) created by chimerax-bug-report@…: […]

Apr 28, 2025:

11:51 PM Ticket #17510 (Handle Boltz prediction out of memory) closed by Tom Goddard: fixed: Fixed. Added error message when "ran out of memory" detected in stdout.
11:06 PM Ticket #17510 (Handle Boltz prediction out of memory) created by goddard@…: […]
8:14 PM Ticket #17509 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]
7:35 PM Ticket #17508 (Crash restoring "xr true" session) created by chimerax-bug-report@…: […]
7:31 PM Ticket #17507 (Restoring "xr true" session: SessionNotRunningError) created by chimerax-bug-report@…: […]
5:11 PM Ticket #17506 ("devel build" run twice, crashes) created by Tony Schaefer: […]
3:47 PM Ticket #17505 (Crash saving PDB file) created by chimerax-bug-report@…: […]
12:11 PM Ticket #17504 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Hi Mike, The KVFinder authors just released a new version of the …
12:06 PM Ticket #17304 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: fixed: The KVFinder authors just released a new version of the pyKVFinder …
12:04 PM Ticket #17504 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by banco.miket@…: […]
11:36 AM Ticket #17503 (glClear failure) closed by Tom Goddard: can't reproduce: glClear() on the status line fails on startup during an expose event. …
11:33 AM Ticket #17481 (Boltz: process_chem_name() arg is None) closed by Tom Goddard: fixed: Fixed. Showing Boltz gui with PDB file opened that has no chain …
11:30 AM Dev2025-4-28 edited by Eric Pettersen: (diff)
11:25 AM Ticket #17486 (VR: CompositorError_TextureUsesUnsupportedFormat) closed by Tom Goddard: can't reproduce: I suspect this errors is from SteamVR not being connected to a headset.
11:24 AM Ticket #17501 (Crash in garbage collection) closed by Eric Pettersen: duplicate
11:18 AM Ticket #17499 (Crash destroying the widgets of a tool or dialog) closed by Eric Pettersen: can't reproduce
11:15 AM Ticket #17498 (Crash in QListWidgetitem.text()) closed by Eric Pettersen: can't reproduce: ...or possibly in QListWidget.selectedItems()
10:48 AM Ticket #17497 (flip_matrix: 'NoneType' object is not subscriptable) closed by Eric Pettersen: duplicate: Duplicate of #17378
10:46 AM Ticket #17496 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:37 AM Ticket #17494 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: Duplicate of #17265; this version predates the workaround
10:34 AM Ticket #17492 (Inadequate OpenGL) closed by Eric Pettersen: not a bug
10:32 AM Ticket #17491 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
10:31 AM Ticket #17490 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:18 AM Ticket #17488 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
10:17 AM Ticket #17487 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate: 6.8.1, not 6.8.2
10:10 AM Ticket #17485 (Crash at startup / in event loop) closed by Eric Pettersen: can't reproduce: Also looks like remote display
10:08 AM Ticket #17484 (Crash at startup / in event loop) closed by Eric Pettersen: can't reproduce: Looks like remote display
10:07 AM Ticket #17483 (Crash issuing warning while reading PDB file) closed by Eric Pettersen: can't reproduce
10:01 AM Ticket #17482 (Crash at startup / in event loop) closed by Eric Pettersen: can't reproduce
9:10 AM Ticket #17503 (glClear failure) created by chimerax-bug-report@…: […]
6:40 AM Ticket #17502 (libtheora is not installable) created by bshaanan@…: […] daily-install.out
6:13 AM Ticket #17501 (Crash in garbage collection) created by chimerax-bug-report@…: […]
5:52 AM Ticket #17500 (Crash in chem_group on Windows) created by amaillard@…: […]
2:41 AM Ticket #17499 (Crash destroying the widgets of a tool or dialog) created by chimerax-bug-report@…: […]
1:56 AM Ticket #17498 (Crash in QListWidgetitem.text()) created by chimerax-bug-report@…: […]
12:44 AM Ticket #17371 (Crash in ExtractMolecule::connect_residue_by_template) closed by Greg Couch: fixed: Don't connect residues by template if all atoms are already bonded.

Apr 27, 2025:

10:38 PM Ticket #17497 (flip_matrix: 'NoneType' object is not subscriptable) created by chimerax-bug-report@…: […]
10:02 PM Ticket #17496 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:43 PM Ticket #17495 (Read ORCA output: first arg of complex() is None) created by chimerax-bug-report@…: […]
8:16 PM Ticket #17494 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
8:11 AM Ticket #17493 (isolde start sim: RuntimeError: clEnqueueReadBuffer) created by lehuetalex@…: […]
6:50 AM Ticket #17492 (Inadequate OpenGL) created by chimerax-bug-report@…: […]
1:27 AM Ticket #17491 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
1:26 AM Ticket #17490 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Apr 26, 2025:

8:10 PM Ticket #17489 (ArtiaX: save particle list: KeyError: 'rlnTomoName') created by chimerax-bug-report@…: […]
1:58 AM Ticket #17488 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]

Apr 25, 2025:

3:56 PM Ticket #17487 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:50 PM Ticket #17486 (VR: CompositorError_TextureUsesUnsupportedFormat) created by chimerax-bug-report@…: […]
1:05 PM Ticket #17485 (Crash at startup / in event loop) created by chimerax-bug-report@…: […]
10:54 AM Ticket #14761 (Crash opening mmCIF file) closed by Greg Couch: fixed: Thanks again for the wonderfully bad mmCIF files. In addition to the …
10:11 AM Ticket #17484 (Crash at startup / in event loop) created by chimerax-bug-report@…: […]
4:02 AM Ticket #17483 (Crash issuing warning while reading PDB file) created by chimerax-bug-report@…: […]
2:54 AM Ticket #17482 (Crash at startup / in event loop) created by chimerax-bug-report@…: […]

Apr 24, 2025:

9:02 PM Ticket #17481 (Boltz: process_chem_name() arg is None) created by chimerax-bug-report@…: […]
5:32 PM Ticket #17422 (Error setting cavity color) closed by Eric Pettersen: duplicate: Duplicate of #16362
3:16 PM Ticket #17252 (Remove "computing secondary structure" log output from matchmaker) closed by Eric Pettersen: fixed: The message is no longer output if the secondary structure is being …
2:08 PM Ticket #17480 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX bug report panel explained what we know about this bug: …
1:12 PM Ticket #17479 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:01 PM Ticket #17480 (Crash on Mac waking from sleep) created by sphulera@…: […]
11:36 AM Ticket #17479 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:53 AM Ticket #17478 (Crash moving window between screens) closed by Tom Goddard: duplicate: The ChimeraX bug report panel explained what we know about this crash: …
10:42 AM Ticket #17477 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:41 AM Ticket #17476 (Molecular Dynamics Viewer: list index out of range) closed by Eric Pettersen: limitation: Hi Yossef, The Molecular Dynamics Viewer plugin can only handle a …
10:32 AM DeveloperMeetings edited by Tom Ferrin: Small editing tweeks (diff)
10:26 AM Ticket #17475 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:25 AM Ticket #17474 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:24 AM Ticket #17473 (Modeller update sequence menus: list.remove(x): x not in list) closed by Eric Pettersen: can't reproduce: It would seem like the only way for this to happen is if the sequence …
10:24 AM DeveloperMeetings edited by Tom Ferrin: Add placeholder for Greg's 4/3/25 presentation (diff)
10:16 AM 2025-2-20 edited by Tom Ferrin: Create link to Greg's slides (diff)
8:16 AM Ticket #17478 (Crash moving window between screens) created by sadik@…: […]
1:29 AM Ticket #17477 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:50 AM Ticket #17476 (Molecular Dynamics Viewer: list index out of range) created by yossef.delossantos@…: […]
12:17 AM Ticket #17475 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Apr 23, 2025:

11:18 PM Ticket #17474 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:58 PM Ticket #17473 (Modeller update sequence menus: list.remove(x): x not in list) created by chimerax-bug-report@…: […]
5:52 PM Ticket #17472 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
5:18 PM Ticket #17472 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:06 PM 2025-4-24 edited by Tom Goddard: (diff)
1:17 PM Ticket #17265 (Crash destroying OpenGL context on exit) closed by Tom Goddard: fixed: Fixed. I put in a work-around to avoid this crash on exit on Mac in …
12:13 PM Ticket #17471 (Crash moving window between screens) closed by Tom Goddard: duplicate: The ChimeraX bug report dialog explained (in red text) what we know …
11:51 AM Ticket #17470 (Crash at exit) closed by Eric Pettersen: duplicate
11:45 AM Ticket #17460 (glDrawBuffer: invalid operation) closed by Tom Goddard: can't reproduce: Have seen this glDrawBuffer(GL_BACK) error a few dozen times over the …
11:37 AM Ticket #17468 (Alt-tab → crash) closed by Eric Pettersen: can't reproduce
11:30 AM Ticket #17467 (Crash showing command-history dialog) closed by Eric Pettersen: can't reproduce: The command history does come up tiny though. Will have to look into …
10:41 AM Ticket #17471 (Crash moving window between screens) created by kstachowski@…: […]
10:04 AM Ticket #17470 (Crash at exit) created by chimerax-bug-report@…: […]
9:59 AM Ticket #17466 (GTP N3) closed by Eric Pettersen: limitation: Hi Owen, Thanks for reporting this problem. It seems that ChimeraX …
9:40 AM Ticket #17469 (Offer to stop long-running tasks) created by Tristan Croll: […]
9:25 AM Ticket #17464 (Unknown crash) closed by Eric Pettersen: can't reproduce: 1.2.5
9:24 AM Ticket #17463 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:22 AM Ticket #17462 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:21 AM Ticket #17461 (Crash executing a command) closed by Eric Pettersen: can't reproduce: Also remote display
9:19 AM Ticket #17459 (Crash executing a command) closed by Eric Pettersen: can't reproduce: Wasn't the last command in the log AFAICT from trying to reproduce it.
6:40 AM Ticket #17468 (Alt-tab → crash) created by chimerax-bug-report@…: […]
6:11 AM Ticket #17467 (Crash showing command-history dialog) created by chimerax-bug-report@…: […]
6:03 AM Ticket #17466 (GTP N3) created by owen.donohoe@…: […]
5:39 AM Ticket #17465 (PermissionError writing temp file) created by zzml4925@…: […]
5:36 AM Ticket #17464 (Unknown crash) created by chimerax-bug-report@…: […]
2:52 AM Ticket #17463 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Apr 22, 2025:

7:22 PM Ticket #17462 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
1:11 PM 2025-4-24 created by Tom Goddard
1:09 PM Dev2025-4-28 created by Tom Goddard
1:08 PM DeveloperMeetings edited by Tom Goddard: (diff)
12:53 PM Ticket #17461 (Crash executing a command) created by chimerax-bug-report@…: […]
12:52 PM Ticket #17460 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…: […]
12:52 PM Ticket #17459 (Crash executing a command) created by chimerax-bug-report@…: […]
12:47 PM Ticket #17458 (QRhiGles2: Failed to make context current) closed by Tom Goddard: can't reproduce: The QRhiGles2 error is from Qt which is failing in using OpenGL. I …
11:29 AM Ticket #17458 (QRhiGles2: Failed to make context current) created by chimerax-bug-report@…: […]
11:01 AM Ticket #17455 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX bug report panel explained what we know about this crash …
10:35 AM Ticket #17457 (More prominent "supersedes" info) created by Elaine Meng: If it's a pain to implement, however, it may not be worth doing. …
10:27 AM Ticket #17456 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:24 AM Ticket #17454 (Tool instance no longer in window list) closed by Eric Pettersen: can't reproduce: No idea why the user is opening the same UniProt multiple times.
10:19 AM Ticket #17453 (Crash in garbage collection) closed by Eric Pettersen: duplicate
6:54 AM Ticket #17456 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:12 AM Ticket #17455 (Crash on Mac waking from sleep) created by fry@…: […]
4:28 AM Ticket #17454 (Tool instance no longer in window list) created by chimerax-bug-report@…: […]

Apr 21, 2025:

9:45 PM Ticket #17453 (Crash in garbage collection) created by chimerax-bug-report@…: […]
5:16 PM Ticket #17452 (File history thumbnail: Framebuffer image capture creation failed) closed by Tom Goddard: can't reproduce: Looks like failed X windows remote display on Linux.
5:12 PM Ticket #17451 (Crash destroying OpenGL context at exit) closed by Eric Pettersen: duplicate
4:58 PM Ticket #17449 (Crash in Qt event loop after vop gaussian) closed by Tom Goddard: can't reproduce: User had open a somewhat large map 1366,1366,260. The same user …
4:55 PM Ticket #17448 (OpenGL context/textures problem) closed by Tom Goddard: can't reproduce
4:36 PM Ticket #17441 (Movie encode: "which ffmpeg" does not work on Windows) closed by Zach Pearson: fixed
4:35 PM Ticket #14644 (Faster DICOM map registration) closed by Zach Pearson: fixed: I think this ticket was probably addressed as part of the performance …
4:32 PM Ticket #17198 (Tech preview: ffmpeg: Permission denied) closed by Zach Pearson: fixed: For some reason ffmpeg was not executable. I added some code to make …
4:24 PM Dev2025-4-21 edited by Tom Goddard: (diff)
3:23 PM Ticket #17452 (File history thumbnail: Framebuffer image capture creation failed) created by chimerax-bug-report@…: […]
3:06 PM Dev2025-4-21 created by Tom Goddard
3:05 PM DeveloperMeetings edited by Tom Goddard: (diff)
2:56 PM Ticket #17450 (Graphics hardware encountered an error and was reset:) closed by Eric Pettersen: duplicate
2:53 PM Ticket #17451 (Crash destroying OpenGL context at exit) created by chimerax-bug-report@…: […]
2:52 PM Ticket #17447 (Regular PDB file opened in MD Viewer) closed by Eric Pettersen: duplicate
2:35 PM Ticket #17446 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
2:30 PM Ticket #17444 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
2:24 PM Ticket #17443 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
2:23 PM Ticket #17442 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Hi Ulrich, Thanks for reporting this problem. The issue is with the …
2:19 PM Ticket #17450 (Graphics hardware encountered an error and was reset:) created by chimerax-bug-report@…: […]
1:55 PM Ticket #17433 (Windows build fails due to symbolic link docs/devel/apps) closed by Zach Pearson: fixed: Should be fixed as of …
1:49 PM Ticket #17438 (Suppress tethers) closed by Eric Pettersen: not a bug: Hi Roden, That is a "tether", showing that the CA is connected to / …
1:43 PM Ticket #17437 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:40 PM Ticket #17436 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: duplicate
1:22 PM Ticket #17425 (Alphafold contacts: pseudobond group or endpoint atom(s) is None) closed by Tom Goddard: invalid: ChimeraX 1.7 is being used to show AlphaFold 3 PAE values for contacts …
1:17 PM Ticket #17430 (Restore session: invalid MRC header value) closed by Tom Goddard: duplicate: The error message indicates your MRC file has invalid header data. …
1:12 PM Ticket #17429 (Log blank) closed by Tom Goddard: can't reproduce: I sometimes see ChimeraX on Windows show the Log as all black. I …
1:03 PM Ticket #17421 (DLL load failed while importing _ribbons) closed by Tom Goddard: can't reproduce: ChimeraX 1.8. Must be something specific about this user's Windows 10 …
12:59 PM Ticket #17418 (Crash destroying OpenGL context at exit) closed by Tom Goddard: duplicate: This is a known bug in Qt 6.8.2 that quiting ChimeraX from the Mac …
12:55 PM Ticket #17433 (Windows build fails due to symbolic link docs/devel/apps) reopened by Tom Goddard: The Windows build does not work on our development machine because of …
12:44 PM Ticket #17432 (Crash moving window between screens) closed by Tom Goddard: duplicate: The ChimeraX bug report dialog explained what we know about this crash …
12:42 PM Ticket #17431 (Graphics crash in glClear, macOS 12.7.4, NVIDIA GeForce GT 755M) closed by Tom Goddard: nonchimerax: Apple Nvidia graphics driver crash.
11:59 AM Ticket #17449 (Crash in Qt event loop after vop gaussian) created by chimerax-bug-report@…: […]
11:45 AM Ticket #17435 (ISOLDE: crash after 'isolde sim start') closed by Eric Pettersen: can't reproduce: Not much info to go on; old version of ISOLDE
11:41 AM Ticket #17434 (ChimeraX asking to reregister. Supposed to only require registering once.) closed by Eric Pettersen: duplicate: Duplicate of #5239; adding milestone to that ticket instead.
11:30 AM Ticket #17428 (Windows fatal exception: access violation) closed by Eric Pettersen: duplicate: Duplicate of #17390
11:29 AM Ticket #17427 (Windows fatal exception: access violation) closed by Eric Pettersen: duplicate
11:28 AM Ticket #17426 (Windows fatal exception: access violation) closed by Eric Pettersen: duplicate
11:12 AM Ticket #17424 (Crash running modal dialog) closed by Eric Pettersen: can't reproduce
11:09 AM Ticket #17423 (Crash in event loop) closed by Eric Pettersen: can't reproduce: Possible remote display issue
11:04 AM Ticket #17448 (OpenGL context/textures problem) created by chimerax-bug-report@…: […]
11:04 AM Ticket #17447 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…: […]
10:31 AM Ticket #17420 (Crash showing main window) closed by Eric Pettersen: can't reproduce: At least, a crash showing the main window is what the Python traceback …
10:19 AM Ticket #17419 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:16 AM Ticket #17416 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
10:15 AM Ticket #17415 (Crash in python_instances_of_class) closed by Eric Pettersen: duplicate
10:14 AM Ticket #17414 (Crash in python_instances_of_class) closed by Eric Pettersen: duplicate
8:16 AM Ticket #17446 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:33 AM Ticket #17445 (SEQCROW: mol_builder: 'NoneType' object has no attribute 'group') created by chimerax-bug-report@…: […]
5:52 AM Ticket #17444 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by ubaumann@…: […]
5:34 AM Ticket #17443 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:25 AM Ticket #17442 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by ubaumann@…: […]
3:57 AM Ticket #17441 (Movie encode: "which ffmpeg" does not work on Windows) created by chimerax-bug-report@…: […]
12:38 AM Ticket #17440 (Boltz install stalls in nogui mode) closed by Tom Goddard: fixed: Fixed. Made nogui mode boltz install and predict wait for subprocess …

Apr 20, 2025:

11:46 PM Ticket #17440 (Boltz install stalls in nogui mode) created by Tom Goddard: When I execute "boltz install ~/boltz" on linux it return and logs no …
11:03 PM GroupMeetings2024 edited by Piet Rottinghuis: 07/18 Piet presentation slides. (diff)
10:59 PM 2025-2-13 edited by Piet Rottinghuis: (diff)
10:21 PM Ticket #17433 (Windows build fails due to symbolic link docs/devel/apps) closed by Greg Couch: limitation
3:17 PM Ticket #17439 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
12:29 PM Ticket #17438 (Suppress tethers) created by Roden Deng Luo: […] ChimeraX Rendering artifact.png
8:13 AM Ticket #17437 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Apr 19, 2025:

10:10 AM Ticket #17436 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]
12:25 AM Ticket #17435 (ISOLDE: crash after 'isolde sim start') created by chimerax-bug-report@…: […]

Apr 18, 2025:

3:28 PM Ticket #17434 (ChimeraX asking to reregister. Supposed to only require registering once.) created by goddard@…: […]
3:27 PM Ticket #17433 (Windows build fails due to symbolic link docs/devel/apps) created by Tom Goddard: Building ChimeraX on Windows 11 (vizvault.cgl.ucsf.edu) fails …
2:16 PM Ticket #17432 (Crash moving window between screens) created by bicoid@…: […]
12:44 PM DeveloperMeetings edited by Zach Pearson: (diff)
11:52 AM Ticket #17431 (Graphics crash in glClear, macOS 12.7.4, NVIDIA GeForce GT 755M) created by chimerax-bug-report@…: […]
10:21 AM Ticket #17430 (Restore session: invalid MRC header value) created by andysen@…