Opened 5 months ago

Last modified 5 months ago

#17658 assigned defect

Segmentations: volume_viewer is None

Reported by: chimerax-bug-report@… Owned by: Zach Pearson
Priority: normal Milestone:
Component: DICOM Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-15.4.1-arm64-arm-64bit
ChimeraX Version: 1.8.dev202404160016 (2024-04-16 00:16:48 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.8.dev202404160016 (2024-04-16)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/kang/Downloads/cryosparc_P10_J204_008_volume_map.mrc

Opened cryosparc_P10_J204_008_volume_map.mrc as #1, grid size 900,900,900,
pixel 0.847, shown at step 1, values float32  

> volume #1 region 0,0,0,899,899,899 step 4

[Repeated 1 time(s)]

> volume #1 change image level -0.0133,0 level 0.02022,0.8 level 0.2033,1

> volume #1 step 1

> ui tool show "Map Filter"

> volume gaussian #1 sDev 1.69

Opened cryosparc_P10_J204_008_volume_map.mrc gaussian as #2, grid size
900,900,900, pixel 0.847, shown at step 1, values float32  

> volume #1 level 0.02106

> hide #!1 models

> volume #2 level 0.01168

> ui tool show "Segment Map"

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.011678  
Only showing 60 of 471 regions.  
Showing 60 of 471 region surfaces  
1766 watershed regions, grouped to 471 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 471 regions, 60
surfaces  

> hide #!2 models

> hide #!3 models

> show #!2 models

> hide #!2 models

> show #!3 models

> show #!2 models

> hide #!2 models

Ungrouped to 290 regions, but did not show all surfaces, see Options  

> hide #!3 models

> show #!3 models

> close #3

> show #!2 models

> volume #2 level 0.1178

> volume #2 level 0.1376

> ui tool show "Segment Map"

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.137580  
Only showing 60 of 314 regions.  
Showing 60 of 314 region surfaces  
1442 watershed regions, grouped to 314 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 314 regions, 60
surfaces  

> hide #!2 models

> show #!2 models

> close #3

> volume #2 level 0.005435

> ui tool show "Segment Map"

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 7776 regions.  
Showing 60 of 7776 region surfaces  
21246 watershed regions, grouped to 7776 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 7776 regions, 60
surfaces  

> close #3

> ui tool show "Segment Map"

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 7776 regions.  
Showing 60 of 7776 region surfaces  
21246 watershed regions, grouped to 7776 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 7776 regions, 60
surfaces  

> hide #!3 models

> show #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> open /Users/kang/Desktop/20250512HlyBD-TolC/TolC&HlyD_fitted.pdb

Chain information for TolC&HlyD_fitted.pdb #4  
---  
Chain | Description  
A B C | No description available  
D E F G H I | No description available  
  

> hide atoms

> show cartoons

> hide #!3 models

> show #!2 models

> volume #2 color #ffffb277

> color #4 #0096ffff

> ui tool show "Segment Map"

> close #3

> select clear

[Repeated 3 time(s)]

> select /B:473

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

224 atoms, 230 bonds, 30 residues, 1 model selected  

> select up

3782 atoms, 3834 bonds, 493 residues, 1 model selected  

> select up

30492 atoms, 30846 bonds, 3879 residues, 1 model selected  

> select add #2

30492 atoms, 30846 bonds, 3879 residues, 3 models selected  

> select subtract #2

30492 atoms, 30846 bonds, 3879 residues, 1 model selected  

> hide #!2 models

> show #!1 models

> hide #4 models

> select subtract #4

Nothing selected  

> show #!2 models

> hide #!1 models

> volume #1 level 0.0608

> hide #!2 models

> hide #!1 models

> show #!2 models

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 15199 regions.  
Showing 60 of 15199 region surfaces  
21246 watershed regions, grouped to 15199 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 15199 regions, 60
surfaces  

> hide #!3 models

> show #!3 models

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 15417 regions.  
Showing 60 of 15417 region surfaces  
21246 watershed regions, grouped to 15417 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 15417 regions, 60
surfaces  

> select #3.1

1 model selected  

> hide #!2 models

> select add #3.16

2 models selected  

> select add #3.37

3 models selected  

> select add #3.14

4 models selected  

> select add #3.11

5 models selected  
Drag select of 26954, 967 of 174324 triangles, 26976, 617 of 172372 triangles  

> select clear

Drag select of 26950, 341490 of 357936 triangles, 26945, 3786 of 187688
triangles, 26953, 74 of 197952 triangles, 26954, 126086 of 174324 triangles,
26976, 141815 of 172372 triangles, 26951, 19529 of 147328 triangles, 26958,
86801 of 139252 triangles, 26959, 63720 of 133840 triangles, 26966, 81041 of
140048 triangles, 26956, 1864 of 131304 triangles, 26974, 18 of 117764
triangles, 26969, 10120 of 91204 triangles, 26980, 13210 of 92864 triangles,
26991, 26977, 343 of 76976 triangles, 26975, 1355 of 87380 triangles, 26971,
20573 of 69268 triangles, 26989, 545 of 60572 triangles, 26729, 21754 of 51056
triangles  

> select clear

> select #3.18

1 model selected  
Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 16446 regions.  
Showing 60 of 16446 region surfaces  
21246 watershed regions, grouped to 16446 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 16446 regions, 60
surfaces  
Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 15552 regions.  
Showing 60 of 15552 region surfaces  
21246 watershed regions, grouped to 15552 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 15552 regions, 60
surfaces  
Drag select of 26679, 94167 of 209592 triangles, 26686, 118239 of 191000
triangles, 26691, 50245 of 127372 triangles, 26680, 23615 of 117256 triangles,
26699, 3856 of 98924 triangles, 26711, 53541 of 99756 triangles, 26734, 61915
of 77816 triangles, 26735, 38776 of 69384 triangles, 26754, 53266 of 69440
triangles  
Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 15342 regions.  
Showing 60 of 15342 region surfaces  
21246 watershed regions, grouped to 15342 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 15342 regions, 60
surfaces  

> select #3.1

1 model selected  

> select clear

Drag select of 27078, 253655 of 427944 triangles, 27091, 175800 of 276100
triangles, 27088, 228160 of 277328 triangles, 27081, 18089 of 215396
triangles, 27082, 45228 of 202440 triangles, 27083, 12269 of 195540 triangles,
27086, 12669 of 138612 triangles, 27096, 17249 of 113024 triangles, 27105,
26729, 1970 of 51056 triangles, 17063, 1762 of 12908 triangles, 25002, 98 of
13024 triangles  

> select add #3.6

13 models selected  

> select add #3.7

14 models selected  

> select subtract #3.10

13 models selected  

> select subtract #3.9

12 models selected  

> select add #3.9

13 models selected  

> select add #3.10

14 models selected  

> select subtract #3.6

13 models selected  

> select subtract #3.13

12 models selected  

> select add #3.13

13 models selected  

> select add #3.27

14 models selected  

> select add #3.6

15 models selected  
Drag select of 27091, 4681 of 276100 triangles, 27088, 3849 of 277328
triangles, 27082, 2039 of 202440 triangles, 27083, 1974 of 195540 triangles,
27100, 3434 of 92260 triangles  

> select clear

Drag select of 27078, 310204 of 427944 triangles, 27091, 27088, 27079, 126440
of 257004 triangles, 27084, 81064 of 234508 triangles, 27081, 73111 of 215396
triangles, 27082, 153456 of 202440 triangles, 27083, 167898 of 195540
triangles, 27086, 88304 of 138612 triangles, 27098, 5847 of 134352 triangles,
27103, 39940 of 142144 triangles, 27097, 90934 of 115884 triangles, 27096,
104289 of 113024 triangles, 27095, 31969 of 106912 triangles, 27094, 41414 of
100668 triangles, 27102, 24074 of 83688 triangles, 27105, 27100, 81957 of
92260 triangles, 27104, 6797 of 69460 triangles, 26729, 11489 of 51056
triangles, 27107, 5636 of 38656 triangles, 25001, 17063, 25002, 24962  

> select clear

Segmenting cryosparc_P10_J204_008_volume_map.mrc gaussian, density threshold
0.005435  
Only showing 60 of 15417 regions.  
Showing 60 of 15417 region surfaces  
21246 watershed regions, grouped to 15417 regions  
Showing cryosparc_P10_J204_008_volume_map gaussian.seg - 15417 regions, 60
surfaces  
Drag select of 26950, 331574 of 357936 triangles, 26945, 24475 of 187688
triangles, 26953, 4927 of 197952 triangles, 26943, 25684 of 194888 triangles,
26954, 169764 of 174324 triangles, 26976, 172339 of 172372 triangles, 26951,
28631 of 147328 triangles, 26946, 44701 of 131460 triangles, 26958, 111425 of
139252 triangles, 26959, 42336 of 133840 triangles, 26966, 116697 of 140048
triangles, 26956, 68089 of 131304 triangles, 26974, 15301 of 117764 triangles,
26969, 40196 of 91204 triangles, 26980, 37552 of 92864 triangles, 26979, 2002
of 82524 triangles, 26991, 26975, 53137 of 87380 triangles, 26971, 41737 of
69268 triangles, 26984, 17624 of 68112 triangles, 26989, 2815 of 60572
triangles, 26982, 39201 of 62520 triangles, 26729, 14448 of 51056 triangles,
26990, 1292 of 58528 triangles, 26983, 5826 of 51932 triangles, 26985, 20409
of 47860 triangles, 26986, 6381 of 46624 triangles, 26993, 11207 of 50972
triangles  

> hide #!3 models

> show #4 models

> hide #4 models

> show #!3 models

> select add #3.33

29 models selected  

> select add #3.38

30 models selected  

> select subtract #3.38

29 models selected  

> select subtract #3.31

28 models selected  

> select add #3.31

29 models selected  

> select subtract #3.4

28 models selected  

> select subtract #3.31

27 models selected  

> select subtract #3.18

26 models selected  

> select subtract #3.35

25 models selected  

> select subtract #3.7

24 models selected  

> select subtract #3.55

23 models selected  

> select subtract #3.13

22 models selected  

> select subtract #3.47

21 models selected  

> select subtract #3.24

20 models selected  

> select subtract #3.6

19 models selected  

> select subtract #3.12

18 models selected  

> select subtract #3.46

17 models selected  

> select subtract #3.44

16 models selected  

> select add #3.44

17 models selected  

> select add #3.47

18 models selected  

> select add #3.38

19 models selected  

> select add #3.28

20 models selected  

> select subtract #3.28

19 models selected  
Grouped 19 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #3.5 models

> show #3.5 models

> hide #3.1 models

> show #3.1 models

> hide #3.1 models

> show #3.1 models

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> select add #3.2

2 models selected  

> select subtract #3.2

1 model selected  

> select add #3.2

2 models selected  

> select subtract #3.2

1 model selected  

> select subtract #3.1

Nothing selected  

> select add #3.1

1 model selected  

> select subtract #3.1

Nothing selected  

> select add #3.1

1 model selected  
Opened cryosparc_P10_J204_008_volume_map_imasked as #5, grid size 900,900,900,
pixel 0.847, shown at step 1, values float32  

> volume #5 level 0.06633

Cell requested for row 4 is out of bounds for table with 47 rows! Resizing
table model.  

> show #!5 models

> hide #!3 models

> select add #3

43 models selected  

> select subtract #3

Nothing selected  

> show #4 models

> hide #4 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!1 models

> hide #!1 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #4 models

> hide #4 models

> show #!5 models

> hide #!5 models

> show #4 models

> close #4

> show #!5 models

> close #5

> show #!3 models

> ui tool show "Segment Map"

> select clear

[Repeated 1 time(s)]Drag select of 26943, 4566 of 194888 triangles, 26946,
10371 of 131460 triangles, 26956, 10528 of 131304 triangles, 26964, 7717 of
108468 triangles, 26993, 1131 of 50972 triangles, 27076, 580038 of 1123132
triangles  

> select #3.28

1 model selected  

> select #3.1

1 model selected  

> select clear

Drag select of 27076, 266534 of 1123132 triangles  
Opened cryosparc_P10_J204_008_volume_map_imasked as #4, grid size 900,900,900,
pixel 0.847, shown at step 1, values float32  

> hide #!3 models

> hide #!4 models

> show #!4 models

> volume #4 level 0.06714

> volume #4 level 0.02013

> close #4

> show #!3 models

> select clear

> select #3.1

1 model selected  
Deleted 15398 regions  

> select clear

> hide #!3 models

> show #!3 models

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

[Repeated 2 time(s)]No map chosen to save  

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

No map chosen to save  

> select #3.1

1 model selected  
No map chosen to save  

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

Already setting window visible!  

> hide #!3 models

> show #!3 models

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

Cell requested for row 2 is out of bounds for table with 4 rows! Resizing
table model.  

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> select clear

> ui tool show Segmentations

> ui view fourup

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1306, in
_surfaceChosen  
self._add_axis_to_volume_viewer(volume_viewer, v)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1306, in
_surfaceChosen  
self._add_axis_to_volume_viewer(volume_viewer, v)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1306, in
_surfaceChosen  
self._add_axis_to_volume_viewer(volume_viewer, v)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1306, in
_surfaceChosen  
self._add_axis_to_volume_viewer(volume_viewer, v)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1306, in
_surfaceChosen  
self._add_axis_to_volume_viewer(volume_viewer, v)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1306, in
_surfaceChosen  
self._add_axis_to_volume_viewer(volume_viewer, v)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
AttributeError: 'NoneType' object has no attribute 'thresholds_panel'  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1352, in
_add_axis_to_volume_viewer  
tp = volume_viewer.thresholds_panel  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

[Repeated 2 time(s)]Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1116, in
mouseMoveEvent  
self.moveSegmentationPuck(x, y, record_seg=False)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1034, in
moveSegmentationPuck  
rel_top, rel_bottom, rel_left, rel_right = self.mousePercentOffsetsFromEdges(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
  
See log for complete Python traceback.  
  

> close #4-6

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 850, in event  
self.enterEvent()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 874, in enterEvent  
self.segmentation_tool.make_puck_visible(self.axis)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/segmentations.py", line 994, in
make_puck_visible  
self.segmentation_cursors[axis].display = True  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 345, in _set_display  
Drawing.set_display(self, display)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 392, in set_display  
dp = self.display_positions  
^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 406, in get_display_positions  
dp = ones((len(self._positions),), bool)  
^^^^^^^^^^^^^^^^^^^^  
TypeError: object of type 'NoneType' has no len()  
  
Error in sys.excepthook:  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 852, in event  
self.leaveEvent()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 879, in leaveEvent  
self.segmentation_tool.make_puck_invisible(self.axis)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/segmentations.py", line 998, in
make_puck_invisible  
self.segmentation_cursors[axis].display = False  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 345, in _set_display  
Drawing.set_display(self, display)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 392, in set_display  
dp = self.display_positions  
^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 406, in get_display_positions  
dp = ones((len(self._positions),), bool)  
^^^^^^^^^^^^^^^^^^^^  
TypeError: object of type 'NoneType' has no len()  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
exception set  
  
The above exception was the direct cause of the following exception:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 311, in ehook  
self.session.ui.thread_safe(self.report_exception, exc_info=exc_info)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 391, in thread_safe  
func(*args, **kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 473, in report_exception  
self.bug(err_msg.replace("\n", "<br>"), is_html=True)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 365, in bug  
self._log(Log.LEVEL_BUG, msg, add_newline, image, is_html,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 522, in _log  
if log.log(*args):  
^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/log/tool.py", line 342, in log  
self.session.ui.thread_safe(f)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 391, in thread_safe  
func(*args, **kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/log/tool.py", line 341, in <lambda>  
f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/log/tool.py", line 262, in show_error_message  
ed.showMessage(msg)  
SystemError: <built-in method showMessage of BiggerErrorDialog object at
0x16ed73eb0> returned a result with an exception set  
  
Original exception was:  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 850, in event  
self.enterEvent()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 874, in enterEvent  
self.segmentation_tool.make_puck_visible(self.axis)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/segmentations.py", line 994, in
make_puck_visible  
self.segmentation_cursors[axis].display = True  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 266, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 345, in _set_display  
Drawing.set_display(self, display)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 392, in set_display  
dp = self.display_positions  
^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/drawing.py", line 406, in get_display_positions  
dp = ones((len(self._positions),), bool)  
^^^^^^^^^^^^^^^^^^^^  
TypeError: object of type 'NoneType' has no len()  

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> ui tool show "Segment Map"

Saving 1 regions to mrc file...  
Opened HlyD_part_LP.mrc as #4, grid size 183,171,360, pixel 0.847, shown at
step 1, values float32  
Wrote HlyD_part_LP.mrc  

Cell requested for row 2 is out of bounds for table with 4 rows! Resizing
table model.  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,6
      Model Number: Z1760005VLL/A
      Chip: Apple M2 Max
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 64 GB
      System Firmware Version: 11881.101.1
      OS Loader Version: 11881.101.1

Software:

    System Software Overview:

      System Version: macOS 15.4.1 (24E263)
      Kernel Version: Darwin 24.4.0
      Time since boot: 15 days, 1 hour, 33 minutes

Graphics/Displays:

    Apple M2 Max:

      Chipset Model: Apple M2 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 38
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        ASUS VG278:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported
        BenQ GW2780:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.14.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.16
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.4.3
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.5
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.56.1
    ChimeraX-AtomicLibrary: 14.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8.dev202404160016
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.9
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.15
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.4
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.37.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.51.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.2
    jedi: 0.19.1
    Jinja2: 3.1.3
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.10
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.3.0
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.0
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4
    traitlets: 5.14.2
    typing-extensions: 4.11.0
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.10

Change History (1)

comment:1 by Eric Pettersen, 5 months ago

Component: UnassignedDICOM
Owner: set to Zach Pearson
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionSegmentations: volume_viewer is None
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