![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17586 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.0-arm64-arm-64bit
ChimeraX Version: 1.9.dev202406122300 (2024-06-12 23:00:04 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 510000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"coalitionID" : 2653,
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"build" : "22A380",
"releaseType" : "User"
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"captureTime" : "2025-05-09 02:20:20.6169 +0900",
"incident" : "42C07FF4-F399-43B3-A587-04E125EC3C34",
"pid" : 25534,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-05-08 23:36:44.0116 +0900",
"procStartAbsTime" : 12116743107225,
"procExitAbsTime" : 12352348308677,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "BAD2AE41-161A-1B52-2311-32EA41EAEBF4",
"wakeTime" : 14176,
"sleepWakeUUID" : "6DCA2353-02D1-41CF-A18B-412F2B563DA9",
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"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6621540352,
"size" : 53244,
"uuid" : "886caca0-5762-3640-8db2-3fa3b911c062",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6620786688,
"size" : 421876,
"uuid" : "ae8ea4b2-b8fd-33e3-a0af-0b7485ab97c0",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4505092096,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
}
],
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=4.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 2176K 17 \nActivity Tracing 256K 1 \nCG backing stores 2944K 8 \nCG image 672K 38 \nColorSync 640K 29 \nCoreAnimation 1248K 77 \nCoreGraphics 80K 5 \nCoreUI image data 3392K 46 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 2.6G 442 \nMALLOC guard page 192K 9 \nMALLOC_MEDIUM (reserved) 696.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)\nMach message 64K 4 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.6M 40 \nStack 155.9M 40 \nVM_ALLOCATE 343.0M 432 \nVM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)\n__AUTH 1944K 373 \n__AUTH_CONST 25.1M 605 \n__CTF 756 1 \n__DATA 20.9M 764 \n__DATA_CONST 38.9M 768 \n__DATA_DIRTY 2040K 242 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 792.8M 163 \n__OBJC_CONST 4875K 341 \n__OBJC_RO 65.1M 1 \n__OBJC_RW 1981K 1 \n__TEXT 847.4M 790 \ndyld private memory 304K 3 \nmapped file 248.4M 78 \nshared memory 3296K 31 \n=========== ======= ======= \nTOTAL 6.1G 5369 \nTOTAL, minus reserved VM space 5.2G 5369 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "63582c5f8a53461413999550",
"factorPackIds" : {
"PROACTIVE_MAIL_INTELLIGENCE_SALIENCY" : "636525247ea6e25a76dc2008"
},
"deploymentId" : 240000002
},
{
"rolloutId" : "5f72dc58705eff005a46b3a9",
"factorPackIds" : {
},
"deploymentId" : 240000015
}
],
"experiments" : [
]
},
"reportNotes" : [
"dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
UCSF ChimeraX version: 1.9.dev202406122300 (2024-06-12)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/uijin/Downloads/fold_2025_05_08_23_17/fold_2025_05_08_23_17_model_0.cif
Chain information for fold_2025_05_08_23_17_model_0.cif #1
---
Chain | Description
A | .
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> coulombic
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for fold_2025_05_08_23_17_model_0.cif_A SES surface #1.1:
minimum, -11.42, mean 0.85, maximum 15.01
To also show corresponding color key, enter the above coulombic command and
add key true
> ui tool show "Side View"
> close #1
> open
> /Users/uijin/Desktop/Phenix/SLC46A2/RealSpaceRefine_95/385-coot-6_real_space_refined_095.pdb
> format pdb
Chain information for 385-coot-6_real_space_refined_095.pdb #1
---
Chain | Description
B | No description available
> open /Users/uijin/Desktop/46A2_inward.cif
Summary of feedback from opening /Users/uijin/Desktop/46A2_inward.cif
---
warnings | Unknown polymer entity '1' on line 26
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for 46A2_inward.cif #2
---
Chain | Description
A | No description available
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 385-coot-6_real_space_refined_095.pdb, chain B (#1) with
46A2_inward.cif, chain A (#2), sequence alignment score = 1863.8
RMSD between 118 pruned atom pairs is 0.547 angstroms; (across all 388 pairs:
6.625)
> rainbow
> morph #1 #2
Computed 51 frame morph #3
> coordset #3 1,51
> rainbow
> color byhetero
> hide #!3 models
> show #2 models
> show #!1 models
> hide #2 models
> show #2 models
> hide #!1 models
> show #!1 models
> show #!3 models
> hide #!3 models
> hide #2 models
> show #2 models
> hide #!1 models
> hide #2 models
> show #2 models
> show #!3 models
> hide #2 models
> open "/Users/uijin/Library/Mobile Documents/com~apple~CloudDocs/Yonsei Univ.
> (2019.09~)/Project/SLC46A2/SLC46A2.pdb"
Chain information for SLC46A2.pdb #4
---
Chain | Description
A | No description available
> matchmaker #4 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 385-coot-6_real_space_refined_095.pdb, chain B (#1) with
SLC46A2.pdb, chain A (#4), sequence alignment score = 1867.6
RMSD between 143 pruned atom pairs is 0.710 angstroms; (across all 392 pairs:
5.311)
> morph #1, #4, #2
Missing or invalid "structures" argument: only initial part "#1" of atom
specifier valid
> morph #1,4,2
Computed 101 frame morph #5
> coordset #5 1,101
> hide #!3 models
> rainbow
> show #!1 models
> hide H
> hide #!1 models
> open /Users/uijin/Desktop/326.mrc
Opened 326.mrc as #6, grid size 280,280,280, pixel 0.938, shown at level
0.0553, step 2, values float32
> open /Users/uijin/Desktop/326.cif
Summary of feedback from opening /Users/uijin/Desktop/326.cif
---
warnings | Unknown polymer entity '1' on line 603
Atom . is not in the residue template for ACO /A:1
Atom . is not in the residue template for ASP /B:537
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for 326.cif #7
---
Chain | Description
B | No description available
> hide #!5 models
> volume #6 level 0.2266
> volume #6 step 1
> hide H
> volume #6 level 0.1549
> volume #6 level 0.33
> hide #!6 models
> select #7:1-280
1792 atoms, 1840 bonds, 215 residues, 1 model selected
> color sel wheat
> color sel dodger blue
> select #281-1000
Nothing selected
> select #7:281-1000
2006 atoms, 2058 bonds, 257 residues, 1 model selected
> color sel wheat
> color #7:ACO
> color #7:ACO orange
> color #7:ACO byhetero
> color #7:ACO orange
> ui tool show "Color Zone"
> color zone #6 near #7 distance 5.63
> show #!6 models
> volume #6 level 0.1606
> volume #6 level 0.1405
> color zone #6 near #7 distance 3
> color zone #6 near #7 distance 2
> color zone #6 near #7 distance 2.5
> volume splitbyzone #6
Opened 326.mrc 0 as #8.1, grid size 280,280,280, pixel 0.938, shown at level
0.141, step 1, values float32
Opened 326.mrc 1 as #8.2, grid size 280,280,280, pixel 0.938, shown at level
0.141, step 1, values float32
Opened 326.mrc 2 as #8.3, grid size 280,280,280, pixel 0.938, shown at level
0.141, step 1, values float32
Opened 326.mrc 3 as #8.4, grid size 280,280,280, pixel 0.938, shown at level
0.141, step 1, values float32
> hide #!8.1 models
> hide #!8.2 models
> show #!8.2 models
> color #7:ACO byhetero
> select clear
> hide #!8.3 models
> show #!8.3 models
> hide #!8.4 models
> show #!8.4 models
> hide #!8.4 models
> show #!8.4 models
> volume #8.3 level 0.2174
> hide #7 models
> volume #8.4 level 0.2188
> volume #8.4 level 0.2048
> volume #8.2 level 0.1438
> select add #8.2
2 models selected
> surface dust #8.2 size 9.38
> select clear
> lighting soft
> set bgColor white
> color #8.2 #9437ffff models
> color #8.2 #7a81ffff models
> color #8.2 #0096ffff models
> hide #!8.2 models
> show #!8.2 models
> select add #8.2
2 models selected
> volume sel style mesh
> show #7 models
> hide #7/A cartoons
> select clear
> color byhetero
> select clear
> volume #8.4 level 0.1517
> ui tool show "Side View"
> hide #!8.3 models
> hide #!8.2 models
> show #!8.2 models
> hide #!8.4 models
> open 9m0s
9m0s title:
Acetyl-CoA-bound SLC33A1 in a cytoplasm-facing conformation [more info...]
Chain information for 9m0s #9
---
Chain | Description | UniProt
A | Acetyl-coenzyme A transporter 1 | ACATN_HUMAN 1-549
Non-standard residues in 9m0s #9
---
ACO — acetyl coenzyme *A
> matchmaker #9 to #7
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 326.cif, chain B (#7) with 9m0s, chain A (#9), sequence alignment
score = 2257.5
RMSD between 363 pruned atom pairs is 0.934 angstroms; (across all 424 pairs:
3.240)
> color #9 silver
> color #9:ACO blue
> color byhetero
> select clear
> hide #9/A atoms
> show #9:ACO blue
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #9:ACO
> select clear
> hide #!9.1 models
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1f' for virtual key 125 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> open /Users/uijin/Downloads/emd_63562.map
Opened emd_63562.map as #10, grid size 256,256,256, pixel 0.83, shown at level
0.0932, step 1, values float32
> hide #!9 models
> hide #!10 models
> show #!10 models
> show #!8.3 models
> hide #!8.3 models
> hide #!8 models
> hide #7 models
> open 9m0s
9m0s title:
Acetyl-CoA-bound SLC33A1 in a cytoplasm-facing conformation [more info...]
Chain information for 9m0s #11
---
Chain | Description | UniProt
A | Acetyl-coenzyme A transporter 1 | ACATN_HUMAN 1-549
Non-standard residues in 9m0s #11
---
ACO — acetyl coenzyme *A
> volume #10 level 0.5324
> volume #10 step 2
> color #10 silver models
> volume #10 level 0.3648
> surface dust #10 size 8.3
> volume #10 level 0.3648
> volume #10 step 1
> volume #10 level 0.2209
> volume #10 level 0.4481
> hide #!11.1 models
> show #!8 models
> show #!8.1 models
> hide #!8.1 models
> show #!8.3 models
> show #!8.4 models
> hide #!11 models
> hide #!10 models
> hide #!8.4 models
> hide #!8.3 models
> hide #!8.2 models
> hide #!8 models
> show #!10 models
> show #!11 models
> rainbow #10
> rainbow #11
> volume #10 level 0.2664
> hide #!11 models
> show #!11 models
> volume #10 level 0.3951
> volume #10 level 0.2285
> volume #10 level 0.2436
> volume #10 level 0.1982
> volume #10 level 0.4481
> volume #10 level 0.486
> hide #!11 models
> hide #!10 models
> show #!8.2 models
> show #7 models
> interfaces #7 & ~solvent
1 buried areas: B A 396
> select clear
> select #7:ACO
85 atoms, 87 bonds, 1 residue, 1 model selected
> show sel atoms
> color byhetero
> hide H
> select clear
> show #7:229 atoms
> show #7:418 atoms
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> show #7:328 atoms
> show #7:345 atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.9.dev202406122300 (2024-06-12)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: Z11C001DKKH/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8419.41.10
OS Loader Version: 8419.41.10
Software:
System Software Overview:
System Version: macOS 13.0 (22A380)
Kernel Version: Darwin 22.1.0
Time since boot: 29 days, 8 hours, 21 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
LG FULL HD:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 75.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.13
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.2
ChimeraX-AtomicLibrary: 14.1.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9.dev202406122300
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-DeepMutationalScan: 1.0
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.4
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.1.5
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.12.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.6
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.2
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.32.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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