![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17477 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.4-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff859011b40 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, PIL._imagingmath, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 58)
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{
"uptime" : 670000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 2561,
"osVersion" : {
"train" : "macOS 15.4",
"build" : "24E248",
"releaseType" : "User"
},
"captureTime" : "2025-04-24 16:18:39.1991 +0800",
"codeSigningMonitor" : 0,
"incident" : "6352BF4D-B272-459D-96A4-567329AFAC9A",
"pid" : 46333,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-04-23 20:06:44.0340 +0800",
"procStartAbsTime" : 628391199820821,
"procExitAbsTime" : 673007342470575,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"AF0E444E-37B4-593A-957D-B5CF6828D46F","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F7A40BD4-636A-5D03-BCEB-C22CD08BD04B",
"appleIntelligenceStatus" : {"reasons":["notOptedIn","deviceNotCapable","siriAssetIsNotReady","unableToFetchAvailability"],"state":"unavailable"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"bootSessionUUID" : "6CD3113A-4E35-41C0-8F31-532433568C6F",
"wakeTime" : 1623,
"bridgeVersion" : {"build":"22P4248","train":"9.4"},
"sleepWakeUUID" : "DE4C4CAF-4989-49D4-A86E-4537885A7574",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4340350976\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT (graphics) 102b48000-102b4c000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":46333},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4340350976\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT (graphics) 102b48000-102b4c000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
"threads" : 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===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lijuanyin/project/pol3/job12/c2/job32/c4/run_class001.mrc
Opened run_class001.mrc as #1, grid size 360,360,360, pixel 0.932, shown at
level 0.00801, step 2, values float32
> volume #1 level 0.006797
> volume #1 step 1
> open /Users/lijuanyin/Downloads/6tut.cif
6tut.cif title:
Cryo-EM structure of the RNA Polymerase III-Maf1 complex [more info...]
Chain information for 6tut.cif #2
---
Chain | Description | UniProt
A | DNA-directed RNA polymerase III subunit RPC1 | RPC1_YEAST 1-1460
B | DNA-directed RNA polymerase III subunit RPC2 | RPC2_YEAST 1-1149
C | DNA-directed RNA polymerases I and III subunit RPAC1 | RPAC1_YEAST 1-335
D | DNA-directed RNA polymerase III subunit RPC9 | RPC9_YEAST 1-161
E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | RPAB1_YEAST 1-215
F | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | RPAB2_YEAST 1-155
G | DNA-directed RNA polymerase III subunit RPC8 | RPC8_YEAST 1-212
H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | RPAB3_YEAST 1-146
I | DNA-directed RNA polymerase III subunit RPC10 | RPC10_YEAST 1-110
J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | RPAB5_YEAST 1-70
K | DNA-directed RNA polymerases I and III subunit RPAC2 | RPAC2_YEAST 1-142
L | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | RPAB4_YEAST 1-70
M | DNA-directed RNA polymerase III subunit RPC5 | RPC5_YEAST 1-282
N | DNA-directed RNA polymerase III subunit RPC4 | RPC4_YEAST 1-422
O | DNA-directed RNA polymerase III subunit RPC3 | RPC3_YEAST 1-654
P | DNA-directed RNA polymerase III subunit RPC6 | RPC6_YEAST 1-317
Q | DNA-directed RNA polymerase III subunit RPC7 | RPC7_YEAST 1-1258
R | Repressor of RNA polymerase III transcription MAF1,Repressor of RNA polymerase III transcription MAF1 | MAF1_YEAST 2-194 195-395
Non-standard residues in 6tut.cif #2
---
ZN — zinc ion
> show cartoons
> hide atoms
> select /O:453
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
107 atoms, 107 bonds, 15 residues, 1 model selected
> select up
1683 atoms, 1712 bonds, 207 residues, 1 model selected
> select up
1747 atoms, 1776 bonds, 215 residues, 1 model selected
> select up
4433 atoms, 4501 bonds, 551 residues, 1 model selected
> select up
40324 atoms, 41048 bonds, 5091 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-41.285,0,1,0,-87.997,0,0,1,-101.28
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.085798,-0.21538,-0.97275,384.29,-0.97456,0.22105,0.037015,228.61,0.20705,0.95118,-0.22887,-80.843
> view matrix models
> #2,-0.56319,-0.26834,-0.78154,445.07,-0.7858,0.4665,0.40609,77.607,0.25562,0.84284,-0.47359,-22.705
> view matrix models
> #2,-0.47188,-0.31818,-0.82225,445.4,-0.8679,0.33177,0.36969,124.71,0.15517,0.88808,-0.4327,-20.534
> view matrix models
> #2,-0.79722,0.060282,-0.60067,392.19,-0.5265,0.41738,0.74067,-24.909,0.29536,0.90673,-0.30101,-74.945
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.79722,0.060282,-0.60067,414.09,-0.5265,0.41738,0.74067,42.583,0.29536,0.90673,-0.30101,16.026
> fitmap #2 inMap #1
Fit molecule 6tut.cif (#2) to map run_class001.mrc (#1) using 40324 atoms
average map value = 0.01182, steps = 184
shifted from previous position = 17.6
rotated from previous position = 14.2 degrees
atoms outside contour = 11776, contour level = 0.0067971
Position of 6tut.cif (#2) relative to run_class001.mrc (#1) coordinates:
Matrix rotation and translation
-0.63243648 0.01576692 -0.77445174 432.99947023
-0.67999172 0.46753974 0.56481665 99.56087192
0.37099238 0.88383143 -0.28496782 -11.09420771
Axis 0.23156609 -0.83145371 -0.50503651
Axis point 230.22769237 0.00000000 66.91231334
Rotation angle (degrees) 136.46321467
Shift along axis 23.09072007
> open /Users/lijuanyin/project/pol3/job12/c1/job27/c25/run_class001.mrc
Opened run_class001.mrc as #3, grid size 160,160,160, pixel 2.8, shown at
level 0.0237, step 1, values float32
> hide #!2 models
> volume #3 level 0.01029
> open
> /Users/lijuanyin/project/ctmito/cu182_184/j391_39s/deposit/state_unknown_7_cp/tRNA_2-coot-0.pdb
Chain information for tRNA_2-coot-0.pdb #4
---
Chain | Description
CE | No description available
> select #4/CE:1-76
1638 atoms, 1831 bonds, 76 residues, 1 model selected
> color sel bynucleotide
> ui tool show "Show Sequence Viewer"
> sequence chain #4/CE
Alignment identifier is 4/CE
> select #4/CE:74
20 atoms, 21 bonds, 1 residue, 1 model selected
> select #4/CE:70-74
105 atoms, 116 bonds, 5 residues, 1 model selected
> select #4/CE:1-2
40 atoms, 44 bonds, 2 residues, 1 model selected
> select #4/CE:1-73
1576 atoms, 1762 bonds, 73 residues, 1 model selected
> open /Users/lijuanyin/Downloads/cryosparc_P1_J479_class_00_00300_volume.mrc
Opened cryosparc_P1_J479_class_00_00300_volume.mrc as #5, grid size 64,64,64,
pixel 5.24, shown at level 1.62, step 1, values float32
> volume #5 level 1.142
> open /Users/lijuanyin/Downloads/cryosparc_P1_J480_class_00_00300_volume.mrc
Opened cryosparc_P1_J480_class_00_00300_volume.mrc as #6, grid size 64,64,64,
pixel 5.24, shown at level 1.84, step 1, values float32
> volume #6 level 1.037
> open /Users/lijuanyin/Downloads/cryosparc_P1_J479_class_00_00500_volume.mrc
Opened cryosparc_P1_J479_class_00_00500_volume.mrc as #7, grid size 64,64,64,
pixel 5.24, shown at level 1.72, step 1, values float32
> volume #7 level 0.8646
> open /Users/lijuanyin/Downloads/cryosparc_P1_J480_class_00_final_volume.mrc
Opened cryosparc_P1_J480_class_00_final_volume.mrc as #8, grid size
120,120,120, pixel 2.8, shown at level 0.812, step 1, values float32
> volume #8 level 0.3837
> open /Users/lijuanyin/Downloads/cryosparc_P1_J482_003_volume_map.mrc
Opened cryosparc_P1_J482_003_volume_map.mrc as #9, grid size 120,120,120,
pixel 2.8, shown at level 0.959, step 1, values float32
> volume #9 level 0.2231
> volume #9 level 0.7794
> volume #9 level 0.07957
> volume #9 level 0.4026
> open /Users/lijuanyin/Downloads/cryosparc_P1_J483_002_volume_map.mrc
Opened cryosparc_P1_J483_002_volume_map.mrc as #10, grid size 120,120,120,
pixel 2.8, shown at level 0.906, step 1, values float32
> volume #10 level 0.5398
> open
> /Users/lijuanyin/Downloads/fold_2025_04_23_21_06/fold_2025_04_23_21_06_model_0.cif
Chain information for fold_2025_04_23_21_06_model_0.cif #11
---
Chain | Description
A | .
B | .
C | .
D | .
E | .
F | .
G | .
H | .
I | .
J | .
K | .
L | .
> show sel cartoons
> hide sel atoms
> select clear
> show #4,11 cartoons
> hide #4,11 atoms
> open /Users/lijuanyin/project/lyar/cu200/j463/run_it009_half2_class001.mrc
Opened run_it009_half2_class001.mrc as #12, grid size 160,160,160, pixel 2.8,
shown at level 0.0437, step 1, values float32
> hide #11 models
> volume #12 level 0.006943
> volume #12 level 0.02116
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_0.cif
Chain information for fold_maf_pol3_model_0.cif #13
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_1.cif
Chain information for fold_maf_pol3_model_1.cif #14
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_2.cif
Chain information for fold_maf_pol3_model_2.cif #15
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_3.cif
Chain information for fold_maf_pol3_model_3.cif #16
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_4.cif
Chain information for fold_maf_pol3_model_4.cif #17
---
Chain | Description
A | .
B | .
> close
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_0.cif
Chain information for fold_maf_pol3_model_0.cif #1
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_1.cif
Chain information for fold_maf_pol3_model_1.cif #2
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_2.cif
Chain information for fold_maf_pol3_model_2.cif #3
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_3.cif
Chain information for fold_maf_pol3_model_3.cif #4
---
Chain | Description
A | .
B | .
> open /Users/lijuanyin/Downloads/fold_maf_pol3/fold_maf_pol3_model_4.cif
Chain information for fold_maf_pol3_model_4.cif #5
---
Chain | Description
A | .
B | .
> mmaker #2-5 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_maf_pol3_model_0.cif, chain A (#1) with
fold_maf_pol3_model_1.cif, chain A (#2), sequence alignment score = 2112.4
RMSD between 194 pruned atom pairs is 0.608 angstroms; (across all 427 pairs:
19.307)
Matchmaker fold_maf_pol3_model_0.cif, chain A (#1) with
fold_maf_pol3_model_2.cif, chain A (#3), sequence alignment score = 2120.2
RMSD between 177 pruned atom pairs is 0.448 angstroms; (across all 427 pairs:
27.508)
Matchmaker fold_maf_pol3_model_0.cif, chain A (#1) with
fold_maf_pol3_model_3.cif, chain A (#4), sequence alignment score = 2132.2
RMSD between 207 pruned atom pairs is 0.530 angstroms; (across all 427 pairs:
20.256)
Matchmaker fold_maf_pol3_model_0.cif, chain A (#1) with
fold_maf_pol3_model_4.cif, chain A (#5), sequence alignment score = 2095.6
RMSD between 197 pruned atom pairs is 0.536 angstroms; (across all 427 pairs:
23.144)
> hide #5 models
> hide #4 models
> hide #3 models
> hide #2 models
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> hide #5 models
> hide #4 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class001.mrc
Opened run_it106_class001.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0237, step 1, values float32
> close
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class001.mrc
Opened run_it106_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0237, step 1, values float32
> volume #1 level 0.04298
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class002.mrc
Opened run_it106_class002.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.023, step 1, values float32
> volume #2 level 0.03023
> volume #1 level 0.02457
> volume #2 level 0.0157
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class003.mrc
Opened run_it106_class003.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0233, step 1, values float32
> volume #3 level 0.003029
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class004.mrc
Opened run_it106_class004.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0226, step 1, values float32
> volume #4 level 0.006087
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class005.mrc
Opened run_it106_class005.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0234, step 1, values float32
> volume #5 level 0.01695
> volume #5 level 0.008597
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c1346/job54_in/run_it106_class006.mrc
Opened run_it106_class006.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0231, step 1, values float32
> volume #6 level 0.01103
> volume #6 level 0.003577
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job56/run_it200_class001.mrc
Opened run_it200_class001.mrc as #7, grid size 160,160,160, pixel 2.8, shown
at level 0.0135, step 1, values float32
> volume #7 level 0.02137
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job56/run_it200_class002.mrc
Opened run_it200_class002.mrc as #8, grid size 160,160,160, pixel 2.8, shown
at level 0.0179, step 1, values float32
> volume #8 level 0.02956
> volume #8 level 0.01759
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job56/run_it200_class003.mrc
Opened run_it200_class003.mrc as #9, grid size 160,160,160, pixel 2.8, shown
at level 0.0198, step 1, values float32
> volume #9 level 0.02488
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job56/run_it200_class004.mrc
Opened run_it200_class004.mrc as #10, grid size 160,160,160, pixel 2.8, shown
at level 0.0175, step 1, values float32
> volume #10 level 0.02435
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job56/run_it200_class005.mrc
Opened run_it200_class005.mrc as #11, grid size 160,160,160, pixel 2.8, shown
at level 0.0185, step 1, values float32
> volume #11 level 0.02541
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job56/run_it200_class006.mrc
Opened run_it200_class006.mrc as #12, grid size 160,160,160, pixel 2.8, shown
at level 0.012, step 1, values float32
> volume #12 level 0.01495
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class001.mrc
Opened run_it204_class001.mrc as #13, grid size 120,120,120, pixel 2.8, shown
at level 0.0134, step 1, values float32
> close
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class001.mrc
Opened run_it204_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0134, step 1, values float32
> volume #1 level 0.02132
> volume #1 level 0.03398
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class002.mrc
Opened run_it204_class002.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0139, step 1, values float32
> volume #2 level 0.03768
> volume #2 level 0.02202
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class003.mrc
Opened run_it204_class003.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0178, step 1, values float32
> volume #3 level 0.03172
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class004.mrc
Opened run_it204_class004.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0138, step 1, values float32
> volume #4 level 0.02813
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class005.mrc
Opened run_it204_class005.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0191, step 1, values float32
> volume #5 level 0.02412
> volume #5 level 0.0308
> open /Users/lijuanyin/project/pol3/job12/c4/job53_in/run_it204_class006.mrc
Opened run_it204_class006.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0111, step 1, values float32
> volume #6 level 0.02875
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class001.mrc
Opened run_it200_class001.mrc as #7, grid size 120,120,120, pixel 2.8, shown
at level 0.0554, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class002.mrc
Opened run_it200_class002.mrc as #8, grid size 120,120,120, pixel 2.8, shown
at level 0.0594, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class003.mrc
Opened run_it200_class003.mrc as #9, grid size 120,120,120, pixel 2.8, shown
at level 0.0576, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class006.mrc
Opened run_it200_class006.mrc as #10, grid size 120,120,120, pixel 2.8, shown
at level 0.0576, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class004.mrc
Opened run_it200_class004.mrc as #11, grid size 120,120,120, pixel 2.8, shown
at level 0.0635, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class005.mrc
Opened run_it200_class005.mrc as #12, grid size 120,120,120, pixel 2.8, shown
at level 0.0577, step 1, values float32
> volume #7 level 0.02934
> volume #7 level 0.02111
> volume #7 level 0.03276
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it200_class001.mrc
Opened run_it200_class001.mrc as #13, grid size 120,120,120, pixel 2.8, shown
at level 0.0596, step 1, values float32
> volume #13 level 0.02429
> volume #7 level 0.02728
> volume #8 level 0.0292
> volume #9 level 0.02092
> volume #8 level 0.02038
> volume #10 level 0.02349
> volume #11 level 0.03641
> volume #12 level 0.02714
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class001.mrc
Opened run_it009_class001.mrc as #14, grid size 120,120,120, pixel 2.8, shown
at level 0.0675, step 1, values float32
> close
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class001.mrc
Opened run_it009_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0675, step 1, values float32
> volume #1 level 0.006682
> volume #1 level 0.01498
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class002.mrc
Opened run_it009_class002.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0561, step 1, values float32
> volume #2 level 0.007571
> volume #2 level 0.01671
> volume #2 level 0.02901
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class003.mrc
Opened run_it009_class003.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0539, step 1, values float32
> volume #3 level 0.0213
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class004.mrc
Opened run_it009_class004.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0634, step 1, values float32
> volume #4 level 0.005949
> volume #4 level 0.02541
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class005.mrc
Opened run_it009_class005.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0553, step 1, values float32
> volume #5 level 0.01791
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it009_class006.mrc
Opened run_it009_class006.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0567, step 1, values float32
> volume #6 level 0.01768
> volume #6 level 0.01815
> volume #6 level 0.01157
> volume #4 level 0.06609
> open /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/run_class001.mrc
Opened run_class001.mrc as #7, grid size 160,160,160, pixel 2.8, shown at
level 0.0277, step 1, values float32
> volume #7 level 0.01283
> volume #7 level 0.003449
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class001.mrc
Opened run_it024_class001.mrc as #8, grid size 120,120,120, pixel 2.8, shown
at level 0.0671, step 1, values float32
> close
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class001.mrc
Opened run_it024_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0671, step 1, values float32
> volume #1 level 0.02224
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class002.mrc
Opened run_it024_class002.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0567, step 1, values float32
> volume #2 level 0.02141
> volume #2 level 0.01536
> volume #2 level 0.02847
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class003.mrc
Opened run_it024_class003.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.05, step 1, values float32
> volume #3 level 0.02692
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class004.mrc
Opened run_it024_class004.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0657, step 1, values float32
> volume #4 level 0.01436
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class005.mrc
Opened run_it024_class005.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.055, step 1, values float32
> volume #5 level 0.02578
> volume #5 level 0.01312
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it024_class006.mrc
Opened run_it024_class006.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.056, step 1, values float32
> volume #6 level 0.007797
> volume #6 level 0.03071
> volume #4 level 0.0507
> volume #1 level 0.03213
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/run_it036_class001.mrc
Opened run_it036_class001.mrc as #7, grid size 160,160,160, pixel 2.8, shown
at level 0.0914, step 1, values float32
> volume #7 level 0.03278
> volume #7 level 0.008773
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/run_it036_class002.mrc
Opened run_it036_class002.mrc as #8, grid size 160,160,160, pixel 2.8, shown
at level 0.0963, step 1, values float32
> volume #8 level 0.01036
> volume #8 level 0.02953
> volume #8 level 0.01817
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/run_it036_class003.mrc
Opened run_it036_class003.mrc as #9, grid size 160,160,160, pixel 2.8, shown
at level 0.0772, step 1, values float32
> volume #9 level 0.02317
> volume #9 level 0.01966
> volume #9 level 0.01545
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/run_it036_class004.mrc
Opened run_it036_class004.mrc as #10, grid size 160,160,160, pixel 2.8, shown
at level 0.0407, step 1, values float32
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/run_it036_class005.mrc
Opened run_it036_class005.mrc as #11, grid size 160,160,160, pixel 2.8, shown
at level 0.0506, step 1, values float32
> volume #11 level 0.02952
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/run_it036_class006.mrc
Opened run_it036_class006.mrc as #12, grid size 160,160,160, pixel 2.8, shown
at level 0.0406, step 1, values float32
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/job64/run_it064_class001.mrc
Opened run_it064_class001.mrc as #13, grid size 160,160,160, pixel 2.8, shown
at level 0.0173, step 1, values float32
> volume #13 level 0.01652
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/job64/run_it064_class002.mrc
Opened run_it064_class002.mrc as #14, grid size 160,160,160, pixel 2.8, shown
at level 0.0199, step 1, values float32
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/job64/run_it064_class003.mrc
Opened run_it064_class003.mrc as #15, grid size 160,160,160, pixel 2.8, shown
at level 0.0235, step 1, values float32
> volume #15 level 0.03217
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/job64/run_it064_class004.mrc
Opened run_it064_class004.mrc as #16, grid size 160,160,160, pixel 2.8, shown
at level 0.0174, step 1, values float32
> volume #16 level 0.02465
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/job64/run_it064_class005.mrc
Opened run_it064_class005.mrc as #17, grid size 160,160,160, pixel 2.8, shown
at level 0.0134, step 1, values float32
> volume #17 level 0.0206
> open
> /Users/lijuanyin/project/pol3/job12/c1/job27/c25/job51/job64/run_it064_class006.mrc
Opened run_it064_class006.mrc as #18, grid size 160,160,160, pixel 2.8, shown
at level 0.0143, step 1, values float32
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it051_class001.mrc
Opened run_it051_class001.mrc as #19, grid size 120,120,120, pixel 2.8, shown
at level 0.067, step 1, values float32
> volume #19 level 0.009613
> volume #19 level 0.0252
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it051_class002.mrc
Opened run_it051_class002.mrc as #20, grid size 120,120,120, pixel 2.8, shown
at level 0.0574, step 1, values float32
> volume #20 level 0.02857
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it051_class003.mrc
Opened run_it051_class003.mrc as #21, grid size 120,120,120, pixel 2.8, shown
at level 0.0496, step 1, values float32
> volume #21 level 0.02475
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it051_class004.mrc
Opened run_it051_class004.mrc as #22, grid size 120,120,120, pixel 2.8, shown
at level 0.0658, step 1, values float32
> volume #22 level 0.02331
> volume #22 level 0.02048
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it051_class005.mrc
Opened run_it051_class005.mrc as #23, grid size 120,120,120, pixel 2.8, shown
at level 0.0562, step 1, values float32
> volume #23 level 0.02209
> volume #23 level 0.01559
> volume #23 level 0.02101
> volume #23 level 0.01071
> open /Users/lijuanyin/project/pol3/ret1/j482/job9/run_it051_class006.mrc
Opened run_it051_class006.mrc as #24, grid size 120,120,120, pixel 2.8, shown
at level 0.0559, step 1, values float32
> volume #24 level 0.02493
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lijuanyin/project/lyar/cu200/j462/job71/c1/run_class001.mrc
Opened run_class001.mrc as #1, grid size 160,160,160, pixel 2.8, shown at
level 0.0878, step 1, values float32
OpenGL version: 4.1 ATI-7.0.3
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2,3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 64 GB
System Firmware Version: 2075.101.2.0.0 (iBridge: 22.16.14248.0.0,0)
OS Loader Version: 583~900
Software:
System Software Overview:
System Version: macOS 15.4 (24E248)
Kernel Version: Darwin 24.4.0
Time since boot: 10天5小时33分钟
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-020
Option ROM Version: 113-D32206U1-020
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
C34H89x:
Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
UI Looks like: 3440 x 1440 @ 50.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: H1AK500000
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Adapter Firmware Version: ff.c8
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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