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Opened 6 months ago
Closed 6 months ago
#17523 closed defect (duplicate)
Similar Structures: self.results is None
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa7724.43079/fold_2025_04_30_12_16_model_0.cif
Chain information for fold_2025_04_30_12_16_model_0.cif #1
---
Chain | Description
A B | .
Computing secondary structure
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa7724.43079/fold_2025_04_30_12_16_model_1.cif
Chain information for fold_2025_04_30_12_16_model_1.cif #2
---
Chain | Description
A B | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa7724.43079/fold_2025_04_30_12_16_model_2.cif
Chain information for fold_2025_04_30_12_16_model_2.cif #3
---
Chain | Description
A B | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa7724.43079/fold_2025_04_30_12_16_model_3.cif
Chain information for fold_2025_04_30_12_16_model_3.cif #4
---
Chain | Description
A B | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa7724.43079/fold_2025_04_30_12_16_model_4.cif
Chain information for fold_2025_04_30_12_16_model_4.cif #5
---
Chain | Description
A B | .
Computing secondary structure
[Repeated 3 time(s)]
> ui tool show Matchmaker
> matchmaker #2-5 to #1
Computing secondary structure
[Repeated 4 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2025_04_30_12_16_model_0.cif, chain A (#1) with
fold_2025_04_30_12_16_model_1.cif, chain A (#2), sequence alignment score =
1766.9
RMSD between 345 pruned atom pairs is 0.322 angstroms; (across all 345 pairs:
0.322)
Matchmaker fold_2025_04_30_12_16_model_0.cif, chain A (#1) with
fold_2025_04_30_12_16_model_2.cif, chain A (#3), sequence alignment score =
1742.9
RMSD between 345 pruned atom pairs is 0.355 angstroms; (across all 345 pairs:
0.355)
Matchmaker fold_2025_04_30_12_16_model_0.cif, chain A (#1) with
fold_2025_04_30_12_16_model_3.cif, chain A (#4), sequence alignment score =
1766.9
RMSD between 345 pruned atom pairs is 0.174 angstroms; (across all 345 pairs:
0.174)
Matchmaker fold_2025_04_30_12_16_model_0.cif, chain A (#1) with
fold_2025_04_30_12_16_model_4.cif, chain A (#5), sequence alignment score =
1766.9
RMSD between 345 pruned atom pairs is 0.220 angstroms; (across all 345 pairs:
0.220)
Alignment identifier is 1
> select
> #1/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #2/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #3/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #4/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #5/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
9750 atoms, 9820 bonds, 1290 residues, 5 models selected
> select #1/A-B:243 #2/A-B:243 #3/A-B:243 #4/A-B:243 #5/A-B:243
50 atoms, 40 bonds, 10 residues, 5 models selected
> select #1/A-B:243 #2/A-B:243 #3/A-B:243 #4/A-B:243 #5/A-B:243
50 atoms, 40 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [243] RMSD: 0.390
> color sel blue
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> show #2 models
> hide #1 models
> show #3 models
> hide #2 models
> show #1 models
> show #2 models
> show #4 models
> show #5 models
> select #1/A-B:328-329 #2/A-B:328-329 #3/A-B:328-329 #4/A-B:328-329
> #5/A-B:328-329
150 atoms, 140 bonds, 20 residues, 5 models selected
> select #1/A-B:328-329 #2/A-B:328-329 #3/A-B:328-329 #4/A-B:328-329
> #5/A-B:328-329
150 atoms, 140 bonds, 20 residues, 5 models selected
. [ID: 1] region 10 chains [328-329] RMSD: 0.405
> select #1/A-B:327 #2/A-B:327 #3/A-B:327 #4/A-B:327 #5/A-B:327
70 atoms, 60 bonds, 10 residues, 5 models selected
> select #1/A-B:327-328 #2/A-B:327-328 #3/A-B:327-328 #4/A-B:327-328
> #5/A-B:327-328
130 atoms, 120 bonds, 20 residues, 5 models selected
. [ID: 1] region 10 chains [327-328] RMSD: 0.405
> select #1/A-B:329 #2/A-B:329 #3/A-B:329 #4/A-B:329 #5/A-B:329
90 atoms, 80 bonds, 10 residues, 5 models selected
> select #1/A-B:328-329 #2/A-B:328-329 #3/A-B:328-329 #4/A-B:328-329
> #5/A-B:328-329
150 atoms, 140 bonds, 20 residues, 5 models selected
. [ID: 1] region 10 chains [328-329] RMSD: 0.405
> select #1/A-B:328 #2/A-B:328 #3/A-B:328 #4/A-B:328 #5/A-B:328
60 atoms, 50 bonds, 10 residues, 5 models selected
> select #1/A-B:328 #2/A-B:328 #3/A-B:328 #4/A-B:328 #5/A-B:328
60 atoms, 50 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [328] RMSD: 0.437
> color sel yellow
> select #1/A-B:335-336 #2/A-B:335-336 #3/A-B:335-336 #4/A-B:335-336
> #5/A-B:335-336
150 atoms, 140 bonds, 20 residues, 5 models selected
> select #1/A-B:335-336 #2/A-B:335-336 #3/A-B:335-336 #4/A-B:335-336
> #5/A-B:335-336
150 atoms, 140 bonds, 20 residues, 5 models selected
. [ID: 1] region 10 chains [335-336] RMSD: 0.298
> select #1/A-B:335 #2/A-B:335 #3/A-B:335 #4/A-B:335 #5/A-B:335
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:335 #2/A-B:335 #3/A-B:335 #4/A-B:335 #5/A-B:335
80 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [335] RMSD: 0.297
> select
> #1/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #2/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #3/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #4/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
> #5/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-195,206-208,227-234,243-246,249-252,280-294,300-305,313-325,336-339
9750 atoms, 9820 bonds, 1290 residues, 5 models selected
> select #1/A-B:334 #2/A-B:334 #3/A-B:334 #4/A-B:334 #5/A-B:334
40 atoms, 30 bonds, 10 residues, 5 models selected
> select #1/A-B:334 #2/A-B:334 #3/A-B:334 #4/A-B:334 #5/A-B:334
40 atoms, 30 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [334] RMSD: 0.237
> select #1/A-B:337 #2/A-B:337 #3/A-B:337 #4/A-B:337 #5/A-B:337
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:337 #2/A-B:337 #3/A-B:337 #4/A-B:337 #5/A-B:337
80 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [337] RMSD: 0.385
> color sel magenta
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> hide #1 models
> show #2 models
> hide #2 models
> show #3 models
> hide #3 models
> show #4 models
> hide #4 models
> show #5 models
> save "C:/Users/Romé/Documents/Back Up/Applications/2022/Projet Blanc AMIDEX
> 2022/Manips/AF prédictions MT Sec Sig Xcp et Hxc/LapA homodimères 1 2 3 AF
> Pred.cxs"
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.47852/fold_2025_04_30_12_15_model_0.cif
Chain information for fold_2025_04_30_12_15_model_0.cif #6
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.47852/fold_2025_04_30_12_15_model_1.cif
Chain information for fold_2025_04_30_12_15_model_1.cif #7
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.47852/fold_2025_04_30_12_15_model_2.cif
Chain information for fold_2025_04_30_12_15_model_2.cif #8
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.47852/fold_2025_04_30_12_15_model_3.cif
Chain information for fold_2025_04_30_12_15_model_3.cif #9
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.47852/fold_2025_04_30_12_15_model_4.cif
Chain information for fold_2025_04_30_12_15_model_4.cif #10
---
Chain | Description
A B | .
C | .
Computing secondary structure
[Repeated 4 time(s)]
> undo
[Repeated 9 time(s)]
> close session
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.890/fold_2025_04_30_12_15_model_0.cif
Chain information for fold_2025_04_30_12_15_model_0.cif #1
---
Chain | Description
A B | .
C | .
Computing secondary structure
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.890/fold_2025_04_30_12_15_model_1.cif
Chain information for fold_2025_04_30_12_15_model_1.cif #2
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.890/fold_2025_04_30_12_15_model_2.cif
Chain information for fold_2025_04_30_12_15_model_2.cif #3
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.890/fold_2025_04_30_12_15_model_3.cif
Chain information for fold_2025_04_30_12_15_model_3.cif #4
---
Chain | Description
A B | .
C | .
> open
> C:/Users/Romé/AppData/Local/Temp/Rar$DRa17636.890/fold_2025_04_30_12_15_model_4.cif
Chain information for fold_2025_04_30_12_15_model_4.cif #5
---
Chain | Description
A B | .
C | .
Computing secondary structure
[Repeated 3 time(s)]
> ui tool show Foldseek
> ui tool show Matchmaker
> matchmaker #2-5 to #1
Computing secondary structure
[Repeated 4 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2025_04_30_12_15_model_0.cif, chain A (#1) with
fold_2025_04_30_12_15_model_1.cif, chain A (#2), sequence alignment score =
1771.7
RMSD between 345 pruned atom pairs is 0.588 angstroms; (across all 345 pairs:
0.588)
Matchmaker fold_2025_04_30_12_15_model_0.cif, chain B (#1) with
fold_2025_04_30_12_15_model_2.cif, chain A (#3), sequence alignment score =
1771.1
RMSD between 238 pruned atom pairs is 0.687 angstroms; (across all 345 pairs:
2.200)
Matchmaker fold_2025_04_30_12_15_model_0.cif, chain A (#1) with
fold_2025_04_30_12_15_model_3.cif, chain A (#4), sequence alignment score =
1759.7
RMSD between 205 pruned atom pairs is 0.611 angstroms; (across all 345 pairs:
3.186)
Matchmaker fold_2025_04_30_12_15_model_0.cif, chain A (#1) with
fold_2025_04_30_12_15_model_4.cif, chain A (#5), sequence alignment score =
1759.7
RMSD between 202 pruned atom pairs is 0.592 angstroms; (across all 345 pairs:
3.620)
Alignment identifier is 1
Alignment identifier is 2
> select
> #1/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #2/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #3/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #4/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #5/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
9950 atoms, 10020 bonds, 1330 residues, 5 models selected
> select #1/A-B:242 #2/A-B:242 #3/A-B:242 #4/A-B:242 #5/A-B:242
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:242 #2/A-B:242 #3/A-B:242 #4/A-B:242 #5/A-B:242
80 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [242] RMSD: 26.184
> select
> #1/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #2/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #3/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #4/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #5/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
9950 atoms, 10020 bonds, 1330 residues, 5 models selected
> select #1/A-B:242 #2/A-B:242 #3/A-B:242 #4/A-B:242 #5/A-B:242
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:243 #2/A-B:243 #3/A-B:243 #4/A-B:243 #5/A-B:243
50 atoms, 40 bonds, 10 residues, 5 models selected
> select #1/A-B:243 #2/A-B:243 #3/A-B:243 #4/A-B:243 #5/A-B:243
50 atoms, 40 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [243] RMSD: 21.753
> color sel blue
> select
> #1/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #2/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #3/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #4/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
> #5/A-B:10-13,32-40,44-47,64-78,107-115,121-125,143-155,166-169,187-196,206-208,227-236,243-247,249-252,280-294,300-305,313-325,336-339
9950 atoms, 10020 bonds, 1330 residues, 5 models selected
> select #1/A-B:337 #2/A-B:337 #3/A-B:337 #4/A-B:337 #5/A-B:337
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:337 #2/A-B:337 #3/A-B:337 #4/A-B:337 #5/A-B:337
80 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [337] RMSD: 5.854
> select #1/C:279 #2/C:279 #3/C:279 #4/C:279 #5/C:279
20 atoms, 15 bonds, 5 residues, 5 models selected
> select #1/C:279 #2/C:279 #3/C:279 #4/C:279 #5/C:279
20 atoms, 15 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [279] RMSD: 20.924
> color sel blue
> select #1/C:113 #2/C:113 #3/C:113 #4/C:113 #5/C:113
35 atoms, 30 bonds, 5 residues, 5 models selected
> select #1/C:113 #2/C:113 #3/C:113 #4/C:113 #5/C:113
35 atoms, 30 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [113] RMSD: 28.951
> color sel yellow
> select #1/A-B:243 #2/A-B:243 #3/A-B:243 #4/A-B:243 #5/A-B:243
50 atoms, 40 bonds, 10 residues, 5 models selected
> select #1/A-B:243 #2/A-B:243 #3/A-B:243 #4/A-B:243 #5/A-B:243
50 atoms, 40 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [243] RMSD: 21.753
> color sel yellow
> select #1/C:311 #2/C:311 #3/C:311 #4/C:311 #5/C:311
30 atoms, 25 bonds, 5 residues, 5 models selected
> select #1/C:311 #2/C:311 #3/C:311 #4/C:311 #5/C:311
30 atoms, 25 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [311] RMSD: 22.772
> select #1/A-B:328 #2/A-B:328 #3/A-B:328 #4/A-B:328 #5/A-B:328
60 atoms, 50 bonds, 10 residues, 5 models selected
> select #1/A-B:328 #2/A-B:328 #3/A-B:328 #4/A-B:328 #5/A-B:328
60 atoms, 50 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [328] RMSD: 14.063
> color sel magenta
> select #1/C:219 #2/C:219 #3/C:219 #4/C:219 #5/C:219
35 atoms, 30 bonds, 5 residues, 5 models selected
> select #1/C:219 #2/C:219 #3/C:219 #4/C:219 #5/C:219
35 atoms, 30 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [219] RMSD: 19.580
> select #1/C:218 #2/C:218 #3/C:218 #4/C:218 #5/C:218
35 atoms, 30 bonds, 5 residues, 5 models selected
> select #1/C:218 #2/C:218 #3/C:218 #4/C:218 #5/C:218
35 atoms, 30 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [218] RMSD: 22.105
> color sel magenta
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> select #1/C:113 #2/C:113 #3/C:113 #4/C:113 #5/C:113
35 atoms, 30 bonds, 5 residues, 5 models selected
> select #1/C:113 #2/C:113 #3/C:113 #4/C:113 #5/C:113
35 atoms, 30 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [113] RMSD: 28.951
> color sel blue
> hide #5 models
> hide #4 models
> hide #3 models
> hide #2 models
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> select #1/A
2510 atoms, 2567 bonds, 345 residues, 1 model selected
> select #2/A
2510 atoms, 2567 bonds, 345 residues, 1 model selected
> select #3/A
2510 atoms, 2567 bonds, 345 residues, 1 model selected
> select add #2
10068 atoms, 10282 bonds, 1356 residues, 2 models selected
> select add #1
17626 atoms, 17997 bonds, 2367 residues, 3 models selected
> select add #3
22674 atoms, 23145 bonds, 3033 residues, 3 models selected
> select add #4
30232 atoms, 30860 bonds, 4044 residues, 4 models selected
> select add #5
37790 atoms, 38575 bonds, 5055 residues, 5 models selected
> view #3 clip false
> select subtract #1
30232 atoms, 30860 bonds, 4044 residues, 4 models selected
> select subtract #2
22674 atoms, 23145 bonds, 3033 residues, 3 models selected
> select subtract #3
15116 atoms, 15430 bonds, 2022 residues, 2 models selected
> select subtract #4
7558 atoms, 7715 bonds, 1011 residues, 1 model selected
> select subtract #5
Nothing selected
> hide #1 models
> hide #2 models
> hide #3 models
> hide #4 models
> select #1/A-B:344-345 #2/A-B:344-345 #3/A-B:344-345 #4/A-B:344-345
> #5/A-B:344-345
190 atoms, 190 bonds, 20 residues, 5 models selected
> select #1/A-B #2/A-B #3/A-B #4/A-B #5/A-B
25100 atoms, 25670 bonds, 3450 residues, 5 models selected
. [ID: 1] region 10 chains [1-345] RMSD: 47.098
> show #4 models
> show #3 models
> show #2 models
> show #1 models
> select add #1
27638 atoms, 28251 bonds, 3771 residues, 5 models selected
> select add #2
30176 atoms, 30832 bonds, 4092 residues, 5 models selected
> select add #3
32714 atoms, 33413 bonds, 4413 residues, 5 models selected
> select add #4
35252 atoms, 35994 bonds, 4734 residues, 5 models selected
> select add #5
37790 atoms, 38575 bonds, 5055 residues, 5 models selected
> select subtract #5
30232 atoms, 30860 bonds, 4044 residues, 4 models selected
> select subtract #4
22674 atoms, 23145 bonds, 3033 residues, 3 models selected
> select subtract #3
15116 atoms, 15430 bonds, 2022 residues, 2 models selected
> select subtract #2
7558 atoms, 7715 bonds, 1011 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/C:113 #2/C:113 #3/C:113 #4/C:113 #5/C:113
35 atoms, 30 bonds, 5 residues, 5 models selected
> color sel yellow
> select add #1
7586 atoms, 7739 bonds, 1015 residues, 5 models selected
> select subtract #1
28 atoms, 24 bonds, 4 residues, 4 models selected
> select add #2
7579 atoms, 7733 bonds, 1014 residues, 4 models selected
> select subtract #2
21 atoms, 18 bonds, 3 residues, 3 models selected
> select add #3
7572 atoms, 7727 bonds, 1013 residues, 3 models selected
> select subtract #3
14 atoms, 12 bonds, 2 residues, 2 models selected
> select add #4
7565 atoms, 7721 bonds, 1012 residues, 2 models selected
> select subtract #4
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #5
7558 atoms, 7715 bonds, 1011 residues, 1 model selected
> select subtract #5
Nothing selected
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> select #1/C:315 #2/C:315 #3/C:315 #4/C:315 #5/C:315
40 atoms, 35 bonds, 5 residues, 5 models selected
> select #1/C:315 #2/C:315 #3/C:315 #4/C:315 #5/C:315
40 atoms, 35 bonds, 5 residues, 5 models selected
. [ID: 2] region 5 chains [315] RMSD: 26.848
> select #1/A-B:330 #2/A-B:330 #3/A-B:330 #4/A-B:330 #5/A-B:330
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:330 #2/A-B:330 #3/A-B:330 #4/A-B:330 #5/A-B:330
80 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [330] RMSD: 12.069
> select #1/A-B:337 #2/A-B:337 #3/A-B:337 #4/A-B:337 #5/A-B:337
80 atoms, 70 bonds, 10 residues, 5 models selected
> select #1/A-B:337 #2/A-B:337 #3/A-B:337 #4/A-B:337 #5/A-B:337
80 atoms, 70 bonds, 10 residues, 5 models selected
. [ID: 1] region 10 chains [337] RMSD: 5.854
> color sel blue
> hide #5 models
> hide #4 models
> hide #3 models
> hide #2 models
> select add #1
7622 atoms, 7771 bonds, 1019 residues, 5 models selected
> select add #2
15164 atoms, 15472 bonds, 2028 residues, 5 models selected
> select subtract #1
7606 atoms, 7757 bonds, 1017 residues, 4 models selected
> select add #1
15164 atoms, 15472 bonds, 2028 residues, 5 models selected
> select subtract #1
7606 atoms, 7757 bonds, 1017 residues, 4 models selected
> select subtract #2
48 atoms, 42 bonds, 6 residues, 3 models selected
> select add #3
7590 atoms, 7743 bonds, 1015 residues, 3 models selected
> select subtract #3
32 atoms, 28 bonds, 4 residues, 2 models selected
> select add #4
7574 atoms, 7729 bonds, 1013 residues, 2 models selected
> select subtract #4
16 atoms, 14 bonds, 2 residues, 1 model selected
> select add #5
7558 atoms, 7715 bonds, 1011 residues, 1 model selected
> select subtract #5
Nothing selected
> hide #1 models
> show #2 models
> show #3 models
> hide #2 models
> hide #3 models
> show #4 models
> hide #4 models
> show #5 models
> save "C:/Users/Romé/Documents/Back Up/Applications/2022/Projet Blanc AMIDEX
> 2022/Manips/AF prédictions MT Sec Sig Xcp et Hxc/LapA LapA HxcK 1 2 3 AF
> Pred.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\tools.py", line 278, in take_snapshot
if not tool_inst.SESSION_SAVE:
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE
return len(self.hits) > 0
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 101, in hits
return self.results.hits
^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'hits'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x0000027BB7B36910>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
ValueError: error processing: 'tools' -> : Error while saving session data for
'tools' ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\tools.py", line 278, in take_snapshot
if not tool_inst.SESSION_SAVE:
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE
return len(self.hits) > 0
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 101, in hits
return self.results.hits
^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'hits'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save
return cxs_save(session, path, **kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x0000027BB7B36910>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
ValueError: error processing: 'tools' -> : Error while saving session data for
'tools' ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
> save "C:/Users/Romé/Documents/Back Up/Applications/2022/Projet Blanc AMIDEX
> 2022/Manips/AF prédictions MT Sec Sig Xcp et Hxc/LapA LapA HxcK 1 2 3 AF
> Pred.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\tools.py", line 278, in take_snapshot
if not tool_inst.SESSION_SAVE:
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE
return len(self.hits) > 0
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 101, in hits
return self.results.hits
^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'hits'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x0000027BB7B36910>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
ValueError: error processing: 'tools' -> : Error while saving session data for
'tools' ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\tools.py", line 278, in take_snapshot
if not tool_inst.SESSION_SAVE:
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE
return len(self.hits) > 0
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\similarstructures\gui.py", line 101, in hits
return self.results.hits
^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'hits'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save
return cxs_save(session, path, **kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x0000027BB7B36910>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x0000027BB7B36910>
ValueError: error processing: 'tools' -> : Error while saving session data for
'tools' ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 31.0.101.2134
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel
Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows
Manufacturer: Dell Inc.
Model: Latitude 7300
OS: Microsoft Windows 10 Professionnel (Build 19045)
Memory: 8,391,450,624
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz
OSLanguage: fr-FR
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.8.30
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pywin32: 306
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Structure Comparison |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Similar Structures: self.results is None |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Duplicate of #16698