Distance decimal place is negative

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open D:\wuda-job\experimental\vip\figure\20250422\5map.cxs format session

Opened cryosparc_P466_J75_map_sharp.mrc-2.mrc as #1, grid size 512,512,512,
pixel 0.84, shown at level 0.0863, step 1, values float32  
Log from Wed Apr 23 19:04:19 2025UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open D:\wuda-job\experimental\vip\figure\S11\VIP1-Ph10.4\PH10.4.cxs format
> session

Opened cryosparc_P466_J75_map_sharp.mrc-2.mrc as #1, grid size 512,512,512,
pixel 0.84, shown at level 0.0863, step 1, values float32  
Log from Thu Nov 21 23:39:46 2024 Startup Messages  
---  
warnings | Data format provider 'LAMMPS coordinates' supplied unknown keywords with format description: {'default_for': '.data'}  
Data format provider 'LAMMPS trajectory' supplied unknown keywords with format
description: {'default_for': '.dump'}  
Data format provider 'LAMMPS coordinates' supplied unknown keywords with
format description: {'default_for': '.data'}  
Data format provider 'LAMMPS trajectory' supplied unknown keywords with format
description: {'default_for': '.dump'}  
  
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:/wuda-
> job/experimental/vip/figure/S11/VIP1-Ph10.4/cryosparc_P466_J75_map_sharp.mrc-2.mrc

Opened cryosparc_P466_J75_map_sharp.mrc-2.mrc as #1, grid size 512,512,512,
pixel 0.84, shown at level 0.0306, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.07848

> surface dust #1 size 8.4

> volume #1 level 0.03639

> volume #1 level 0.04978

> set bgColor white

> open D:/wuda-
> job/experimental/vip/figure/S11/VIP1-Ph10.4/Vip1-Vip2-5-0708-coot-0.pdb

Chain information for Vip1-Vip2-5-0708-coot-0.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
F | No description available  
G | No description available  
H | No description available  
  

> volume #1 level 0.04022

> volume #1 level 0.06126

> volume #1 level 0.05552

> volume #1 level 0.05744

> volume #1 level 0.05935

> volume #1 level 0.06126

> color bychain

> show atoms

> hide atoms

> show cartoons

> hide #!1 models

> select /A

3982 atoms, 4051 bonds, 1 pseudobond, 511 residues, 2 models selected  

> color (#!2 & sel) lime

> select /B

3947 atoms, 4016 bonds, 1 pseudobond, 506 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel sky blue

> color sel light sky blue

> color sel sky blue

> color sel cyan

> select /C

3934 atoms, 4003 bonds, 1 pseudobond, 504 residues, 2 models selected  

> color sel magenta

> select /E

Nothing selected  

> select /F

4004 atoms, 4073 bonds, 1 pseudobond, 514 residues, 2 models selected  

> color sel khaki

> color sel pale goldenrod

> color sel wheat

> color sel bisque

> color sel moccasin

> color sel wheat

> select /G

3989 atoms, 4058 bonds, 1 pseudobond, 512 residues, 2 models selected  

> color sel dark salmon

> color sel salmon

> color sel light salmon

> color sel salmon

[Repeated 1 time(s)]

> select /F

4004 atoms, 4073 bonds, 1 pseudobond, 514 residues, 2 models selected  

> color sel lemon chiffon

[Repeated 1 time(s)]

> color sel wheat

> select /H

3188 atoms, 3241 bonds, 400 residues, 1 model selected  

> color sel forest green

> select #2

23058 atoms, 23442 bonds, 5 pseudobonds, 2961 residues, 2 models selected  

> ~select #2

Nothing selected  

> show #!1 models

> color bychain

[Repeated 2 time(s)]

> undo

[Repeated 2 time(s)]

> hide #!1 models

> show surfaces

> color bychain

[Repeated 2 time(s)]

> hide surfaces

> undo

[Repeated 3 time(s)]

> show surfaces

> color bychain

> undo

> hide surfaces

> show #!1 models

> color zone #1 near #2 distance 5.04

> volume #1 level 0.06509

> volume #1 level 0.08231

> volume #1 level 0.071

> volume #1 level 0.09205

> volume #1 level 0.08248

> lighting soft

> volume #1 level 0.08631

> hide #!2 models

> save D:/wuda-job/experimental/vip/figure/S11/VIP1-Ph10.4/PH10.4.cxs
> includeMaps true

> select /A

3982 atoms, 4051 bonds, 1 pseudobond, 511 residues, 2 models selected  

> show #!2 models

> ui tool show "Color Actions"

> color sel chartreuse

> color sel lawn green

> color zone #1 near sel & #2 distance 5.04

[Repeated 1 time(s)]

> undo

[Repeated 1 time(s)]

> select #1

2 models selected  

> color zone #1 near #2 distance 5.04

> ~select #1

Nothing selected  

> hide #!1 models

> show #!1 models

> hide #!2 models

> save D:/wuda-job/experimental/vip/figure/S11/VIP1-Ph10.4/PH4.tif width 2300
> height 1345 supersample 3

> turn x 90

> save D:/wuda-job/experimental/vip/figure/S11/VIP1-Ph10.4/PH4-B.tif width
> 2300 height 1345 supersample 3

> turn x -90

> save D:/wuda-job/experimental/vip/figure/S11/VIP1-Ph10.4/PH4-A.tif width
> 2300 height 1345 supersample 3

> save D:/wuda-job/experimental/vip/figure/S11/VIP1-Ph10.4/PH10.4.cxs
> includeMaps true

——— End of log from Thu Nov 21 23:39:46 2024 ———

opened ChimeraX session  

> select #2.1

5 pseudobonds, 1 model selected  

> hide #!1 models

> show #!2 models

> turn x -90

[Repeated 2 time(s)]

> ~select #2.1

Nothing selected  

> select #2.1

5 pseudobonds, 1 model selected  

> hide #!2 models

> show #!2 models

> select #2

23058 atoms, 23442 bonds, 5 pseudobonds, 2961 residues, 2 models selected  

> ~select #2

6 models selected  

> select #2.1

5 pseudobonds, 1 model selected  

> select #2.2

3982 atoms, 511 residues, 1 model selected  

> color #2.2 #ffffcc transparency 0

> color #2.2 pink transparency 0

> color #2.3 #ffaa88 transparency 0

> color #2.3 salmon transparency 0

> ui tool show "Color Actions"

> color sel light pink

> color #2.2 #daebf9 transparency 0

> color #2.2 #222222 transparency 0

> color #2.2 #ffffcc transparency 0

> color #2.2 pink transparency 0

> select #2.3

3947 atoms, 506 residues, 1 model selected  

> show #!1 target m

[Repeated 1 time(s)]

> hide #!1 target m

> ~select #2.3

1 model selected  

> select #2.3

3947 atoms, 506 residues, 1 model selected  

> show #!1 target m

[Repeated 1 time(s)]

> hide #!1 target m

> color #2.4 #ee66ee transparency 0

> color #2.4 lavender transparency 0

> select #2.4

3934 atoms, 504 residues, 1 model selected  

> select #2.5

4004 atoms, 514 residues, 1 model selected  

> color #2.5 #eeeeee transparency 0

> color #2.5 palegoldenrod transparency 0

> select #2.7

3188 atoms, 400 residues, 1 model selected  

> select #2.6

3989 atoms, 512 residues, 1 model selected  

> color #2.6 #ffffee transparency 0

> color #2.6 mistyrose transparency 0

> color sel #ffe4e1

> select #2.2

3982 atoms, 511 residues, 1 model selected  

> color sel #ffc0cb

> select #2.3

3947 atoms, 506 residues, 1 model selected  

> color sel #fa8072

> select #2.4

3934 atoms, 504 residues, 1 model selected  

> color sel #e6e6fa

> select #2.5

4004 atoms, 514 residues, 1 model selected  

> color sel #eee8aa

> show #!1 models

> select #1

2 models selected  

> color zone #1 near #2 distance 5.04

> ~select #1

Nothing selected  

> select #1

2 models selected  

> ~select #1

Nothing selected  

> select #2

23058 atoms, 23442 bonds, 5 pseudobonds, 2961 residues, 2 models selected  

> ~select #2

6 models selected  

> hide #!2 models

> save D:/wuda-job/experimental/vip/figure/20250422/5top.tif width 2300 height
> 1345 supersample 3 transparentBackground true

> show #!2 models

> hide #!1 models

> lighting full

[Repeated 1 time(s)]

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting soft

> graphics silhouettes true

> lighting soft

[Repeated 1 time(s)]

> graphics silhouettes false

> lighting soft

[Repeated 2 time(s)]

> lighting simple

> lighting soft

> lighting flat

> lighting shadows true intensity 0.5

> lighting soft

> graphics silhouettes false

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting soft

> save D:/wuda-job/experimental/vip/figure/20250422/5top-1.tif width 2300
> height 1345 supersample 3 transparentBackground true

> turn x -90

> show #!1 models

> hide #!2 models

> save D:/wuda-job/experimental/vip/figure/20250422/side5.tif width 2300
> height 1345 supersample 3 transparentBackground true

> hide #!1 models

> show #!2 models

> save D:/wuda-job/experimental/vip/figure/20250422/side5-1.tif width 2300
> height 1345 supersample 3 transparentBackground true

> save D:/wuda-job/experimental/vip/figure/20250422/5map.cxs includeMaps true

——— End of log from Wed Apr 23 19:04:19 2025 ———

opened ChimeraX session  

> ui tool show Distances

> select #2/H:73@CB #1/C:455@CE1

1 atom, 1 residue, 1 model selected  
Exactly two atoms must be selected!  

> select #2/H:73@CB #2/C:455@CE1

2 atoms, 2 residues, 1 model selected  

> distance /H:73@CB /C:455@CE1

Traceback (most recent call last):  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 265, in _create_distance  
run(self.session, "distance %s %s" % tuple(a.string(style="command") for a in
sel_atoms))  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\cmd.py", line 146, in distance  
session.logger.info(("Distance between %s and %s: " +
session.pb_dist_monitor.distance_format)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
ValueError: unsupported format character '-' (0x2d) at index 30  
  
ValueError: unsupported format character '-' (0x2d) at index 30  
  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\cmd.py", line 146, in distance  
session.logger.info(("Distance between %s and %s: " +
session.pb_dist_monitor.distance_format)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-packages\chimerax\core\triggerset.py",
line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\monitor.py", line 126, in _changes_handler  
self._update_distances(pseudobonds=[pb])  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\monitor.py", line 158, in _update_distances  
label_settings['text'] = fmt % pb.length  
~~~~^~~~~~~~~~~  
ValueError: unsupported format character '-' (0x2d) at index 2  
  
Error processing trigger "changes":  
ValueError: unsupported format character '-' (0x2d) at index 2  
  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\monitor.py", line 158, in _update_distances  
label_settings['text'] = fmt % pb.length  
~~~~^~~~~~~~~~~  
  
See log for complete Python traceback.  
  

> show sel atoms

> distance style symbol true

[Repeated 2 time(s)]Traceback (most recent call last):  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 213, in make_callback  
self._callback(self)  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 534, in <lambda>  
run(ses, "distance style " + cmd_suffix  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\cmd.py", line 264, in distance_style  
session.pb_dist_monitor.show_units = symbol  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\monitor.py", line 104, in _set_show_units  
self._update_distances()  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\monitor.py", line 158, in _update_distances  
label_settings['text'] = fmt % pb.length  
~~~~^~~~~~~~~~~  
ValueError: unsupported format character '-' (0x2d) at index 2  
  
ValueError: unsupported format character '-' (0x2d) at index 2  
  
File "D:\soft\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\dist_monitor\monitor.py", line 158, in _update_distances  
label_settings['text'] = fmt % pb.length  
~~~~^~~~~~~~~~~  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 462.30
OpenGL renderer: GeForce MX250/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: zh_CN.cp936
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows

Manufacturer: LENOVO
Model: 81RS
OS: Microsoft Windows 10 家庭中文版 (Build 19045)
Memory: 16,910,639,104
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-1035G1 CPU @ 1.00GHz
OSLanguage: zh-CN

Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2024.8.30
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.5
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pywin32: 306
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
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    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
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    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
    WMI: 1.5.1