![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17462 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.4-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff859011b40 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, PIL._imagingmath, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 60)
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{
"uptime" : 590000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 2561,
"osVersion" : {
"train" : "macOS 15.4",
"build" : "24E248",
"releaseType" : "User"
},
"captureTime" : "2025-04-23 10:19:18.2440 +0800",
"codeSigningMonitor" : 0,
"incident" : "85BFB168-1E8B-4593-A2E8-30B85A285AA9",
"pid" : 51433,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-04-21 21:15:55.9081 +0800",
"procStartAbsTime" : 506532078166549,
"procExitAbsTime" : 593145807932318,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"AF0E444E-37B4-593A-957D-B5CF6828D46F","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F7A40BD4-636A-5D03-BCEB-C22CD08BD04B",
"appleIntelligenceStatus" : {"state":"unavailable","reasons":["siriAssetIsNotReady","deviceNotCapable","notOptedIn","unableToFetchAvailability"]},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"bootSessionUUID" : "6CD3113A-4E35-41C0-8F31-532433568C6F",
"wakeTime" : 1141,
"bridgeVersion" : {"build":"22P4248","train":"9.4"},
"sleepWakeUUID" : "09A90048-0E1C-49B9-B271-B8E83A645588",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4309573632\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 100dee000-100df2000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":51433},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4309573632\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 100dee000-100df2000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
"threads" : 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"name" : "libalign_algs.dylib"
},
{
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"arch" : "x86_64",
"base" : 4817444864,
"size" : 16384,
"uuid" : "ce412e76-387f-357d-b7be-b4654bc453d4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4817158144,
"size" : 32768,
"uuid" : "ad017f10-16c5-3c7b-8ee2-47e1604a376a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703520374784,
"size" : 247864,
"uuid" : "05c853af-32f8-317c-91c7-03456d7a4311",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703520624640,
"size" : 48592,
"uuid" : "b33f6374-3285-3bc8-8946-3472c31aabcd",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
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"base" : 140703519199232,
"size" : 560296,
"uuid" : "8fc0db40-599b-3cd2-991c-1faf1534c667",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
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"uuid" : "581c60e7-fabf-3017-9cde-23cf85d2a0c4",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
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{
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"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
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{
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"arch" : "x86_64",
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"uuid" : "322735be-882c-3d00-8533-022051e5ed63",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
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"base" : 140703521095680,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
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"uuid" : "52038a90-4140-3132-93c2-e08624a409af",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
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"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
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"uuid" : "c65d0254-38e8-3d84-89ed-a8b8504c6f57",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
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"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
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"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
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"sharedCache" : {
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"legacyInfo" : {
"threadTriggered" : {
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"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "94ab54744a225c7b6d0794125b133ff8b9ff62af",
"trialInfo" : {
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{
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"experiments" : [
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}
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lijuanyin/project/ctmito/cu182_184/j391_39s/deposit/tRNA_2.pdb
Chain information for tRNA_2.pdb #1
---
Chain | Description
Bb | No description available
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class001.mrc
Opened run_it163_class001.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0597, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class002.mrc
Opened run_it163_class002.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0575, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class003.mrc
Opened run_it163_class003.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0584, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class004.mrc
Opened run_it163_class004.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0612, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class005.mrc
Opened run_it163_class005.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0592, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class006.mrc
Opened run_it163_class006.mrc as #7, grid size 120,120,120, pixel 2.8, shown
at level 0.0615, step 1, values float32
> volume #4 level 0.03043
> volume #3 level 0.02474
> volume #2 level 0.02528
> volume #3 level 0.02055
> volume #3 level 0.03649
> volume #3 level 0.01467
> volume #2 level 0.01877
> volume #2 level 0.03644
> volume #3 level 0.02306
> volume #4 level 0.01151
> volume #4 level 0.02503
> volume #5 level 0.02316
> volume #5 level 0.007929
> volume #5 level 0.02316
> volume #6 level 0.02129
> volume #3 level 0.01635
> volume #7 level 0.01766
> close #6
> volume #7 level 0.02233
> volume #5 level 0.0184
> open /Users/lijuanyin/Downloads/AF-Q9NVU0-F1-model_v4.pdb
AF-Q9NVU0-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit
RPC5 (Q9NVU0) [more info...]
Chain information for AF-Q9NVU0-F1-model_v4.pdb #6
---
Chain | Description | UniProt
A | DNA-directed RNA polymerase III subunit RPC5 | RPC5_HUMAN 1-708
> open /Users/lijuanyin/Downloads/8iuh.cif
8iuh.cif title:
RNA polymerase III pre-initiation complex open complex 1 [more info...]
Chain information for 8iuh.cif #8
---
Chain | Description | UniProt
1 | snRNA-activating protein complex subunit 1 | SNPC1_HUMAN 1-368
3 | snRNA-activating protein complex subunit 3 | SNPC3_HUMAN 1-411
4 | snRNA-activating protein complex subunit 4 | SNPC4_HUMAN 1-1469
A | DNA-directed RNA polymerase III subunit RPC1 | RPC1_HUMAN 1-1390
B | DNA-directed RNA polymerase III subunit RPC2 | RPC2_HUMAN 1-1133
C | DNA-directed RNA polymerases I and III subunit RPAC1 | RPAC1_HUMAN 1-346
D | DNA-directed RNA polymerase III subunit RPC9 | RPC9_HUMAN 1-148
E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | RPAB1_HUMAN 1-210
F | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | RPAB2_HUMAN 1-127
G | DNA-directed RNA polymerase III subunit RPC8 | RPC8_HUMAN 1-204
H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | RPAB3_HUMAN 1-150
I | DNA-directed RNA polymerase III subunit RPC10 | RPC10_HUMAN 1-108
J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | RPAB5_HUMAN 1-67
K | DNA-directed RNA polymerases I and III subunit RPAC2 | RPAC2_HUMAN 1-133
L | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | RPAB4_HUMAN 1-58
M | DNA-directed RNA polymerase III subunit RPC5 | RPC5_HUMAN 1-708
N | DNA-directed RNA polymerase III subunit RPC4 | RPC4_HUMAN 1-398
O | DNA-directed RNA polymerase III subunit RPC3 | RPC3_HUMAN 1-534
P | DNA-directed RNA polymerase III subunit RPC6 | RPC6_HUMAN 1-316
Q | DNA-directed RNA polymerase III subunit RPC7 | RPC7_HUMAN 1-223
U | TATA-box-binding protein | TBP_HUMAN 1-339
V | Transcription factor IIIB 50 kDa subunit | BRF2_HUMAN 1-419
W | Transcription factor TFIIIB component B'' homolog | BDP1_HUMAN 1-2624
X | DNA (81-MER) |
Y | DNA (81-MER) |
Non-standard residues in 8iuh.cif #8
---
MG — magnesium ion
SF4 — iron/sulfur cluster
ZN — zinc ion
> hide #!2 models
> hide #1 models
> hide #6 models
> view
> show #!8 cartoons
> hide #!8 atoms
> select /M
3382 atoms, 3455 bonds, 1 pseudobond, 422 residues, 2 models selected
> close
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class001.mrc
Opened run_it141_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0553, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class002.mrc
Opened run_it141_class002.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0594, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class003.mrc
Opened run_it141_class003.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0575, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class004.mrc
Opened run_it141_class004.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0634, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class005.mrc
Opened run_it141_class005.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0575, step 1, values float32
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class006.mrc
Opened run_it141_class006.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0576, step 1, values float32
> volume #1 level 0.03013
> volume #2 level 0.02197
> volume #2 level 0.01831
> volume #1 level 0.02332
> volume #3 level 0.01585
> volume #4 level 0.02529
> volume #4 level 0.03702
> volume #4 level 0.03042
> volume #5 level 0.02552
> volume #5 level 0.02478
> volume #3 level 0.02405
> volume #6 level 0.03252
> open /Users/lijuanyin/Downloads/8iuh.cif
8iuh.cif title:
RNA polymerase III pre-initiation complex open complex 1 [more info...]
Chain information for 8iuh.cif #7
---
Chain | Description | UniProt
1 | snRNA-activating protein complex subunit 1 | SNPC1_HUMAN 1-368
3 | snRNA-activating protein complex subunit 3 | SNPC3_HUMAN 1-411
4 | snRNA-activating protein complex subunit 4 | SNPC4_HUMAN 1-1469
A | DNA-directed RNA polymerase III subunit RPC1 | RPC1_HUMAN 1-1390
B | DNA-directed RNA polymerase III subunit RPC2 | RPC2_HUMAN 1-1133
C | DNA-directed RNA polymerases I and III subunit RPAC1 | RPAC1_HUMAN 1-346
D | DNA-directed RNA polymerase III subunit RPC9 | RPC9_HUMAN 1-148
E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | RPAB1_HUMAN 1-210
F | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | RPAB2_HUMAN 1-127
G | DNA-directed RNA polymerase III subunit RPC8 | RPC8_HUMAN 1-204
H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | RPAB3_HUMAN 1-150
I | DNA-directed RNA polymerase III subunit RPC10 | RPC10_HUMAN 1-108
J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | RPAB5_HUMAN 1-67
K | DNA-directed RNA polymerases I and III subunit RPAC2 | RPAC2_HUMAN 1-133
L | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | RPAB4_HUMAN 1-58
M | DNA-directed RNA polymerase III subunit RPC5 | RPC5_HUMAN 1-708
N | DNA-directed RNA polymerase III subunit RPC4 | RPC4_HUMAN 1-398
O | DNA-directed RNA polymerase III subunit RPC3 | RPC3_HUMAN 1-534
P | DNA-directed RNA polymerase III subunit RPC6 | RPC6_HUMAN 1-316
Q | DNA-directed RNA polymerase III subunit RPC7 | RPC7_HUMAN 1-223
U | TATA-box-binding protein | TBP_HUMAN 1-339
V | Transcription factor IIIB 50 kDa subunit | BRF2_HUMAN 1-419
W | Transcription factor TFIIIB component B'' homolog | BDP1_HUMAN 1-2624
X | DNA (81-MER) |
Y | DNA (81-MER) |
Non-standard residues in 8iuh.cif #7
---
MG — magnesium ion
SF4 — iron/sulfur cluster
ZN — zinc ion
> show cartoons
> hide atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class001.mrc
Opened run_it200_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0596, step 1, values float32
OpenGL version: 4.1 ATI-7.0.3
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2,3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 64 GB
System Firmware Version: 2075.101.2.0.0 (iBridge: 22.16.14248.0.0,0)
OS Loader Version: 583~900
Software:
System Software Overview:
System Version: macOS 15.4 (24E248)
Kernel Version: Darwin 24.4.0
Time since boot: 8天23小时27分钟
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-020
Option ROM Version: 113-D32206U1-020
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
C34H89x:
Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
UI Looks like: 3440 x 1440 @ 50.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: H1AK500000
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Adapter Firmware Version: ff.c8
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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