![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17362 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.4-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Thread 0x00000003aa23b000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 561 in select
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/asyncio/base_events.py", line 1884 in _run_once
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/asyncio/base_events.py", line 607 in run_forever
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/tornado/platform/asyncio.py", line 205 in start
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/ipykernel/iostream.py", line 92 in _thread_main
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000039eca3000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 320 in wait
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/IPython/core/history.py", line 903 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/IPython/core/history.py", line 61 in only_when_enabled
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/decorator.py", line 232 in fun
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x000000020abccc40 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, zmq.backend.cython._zmq, tornado.speedups, psutil._psutil_osx, psutil._psutil_posix, PyQt6.QtSvg, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 63)
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{
"uptime" : 140000,
"procRole" : "Background",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "Mac16,8",
"coalitionID" : 2165,
"osVersion" : {
"train" : "macOS 15.4",
"build" : "24E248",
"releaseType" : "User"
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"captureTime" : "2025-04-12 20:42:09.2219 +0100",
"codeSigningMonitor" : 2,
"incident" : "A12F048D-12C1-4920-A74F-3644EB55D733",
"pid" : 3842,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-04-08 12:59:08.4124 +0100",
"procStartAbsTime" : 17843312136,
"procExitAbsTime" : 3432782544464,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"AAC3A4CD-535F-5CEA-93CB-3B1DE55218F1","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "4C77ECF0-31FD-72E6-E66F-2DAE3745D90A",
"appleIntelligenceStatus" : {"state":"unavailable","reasons":["selectedLanguageDoesNotMatchSelectedSiriLanguage","siriAssetIsNotReady"]},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "CAEB2F4F-1ABE-4648-80EF-E663C3428AF6",
"wakeTime" : 4,
"sleepWakeUUID" : "F357295D-614F-4B96-B04C-39DF339A96C1",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4343136256\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 102df0000-102df4000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":3842},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4343136256\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 102df0000-102df4000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc1_ls2654_ls1741_rep1/fold_nrc1_ls2654_ls1741_rep1_model_0.cif
> format mmcif
Chain information for fold_nrc1_ls2654_ls1741_rep1_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> lighting soft
> graphics silhouettes true
> color bychain
> color bypolymer
> show surfaces
> save /Users/toghani/Desktop/vinc.png width 3000 height 2488 supersample 4
> transparentBackground true
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls0504_rep1/fold_nrc0_ls1598_ls0504_rep1_model_0.cif
Chain information for fold_nrc0_ls1598_ls0504_rep1_model_0.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
> close #1
> color bypolymer
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls2655_rep1/fold_nrc0_ls1598_ls2655_rep1_model_0.cif
Chain information for fold_nrc0_ls1598_ls2655_rep1_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> color bypolymer
> rename #2 id #1
> close #1
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls0504_rep1/fold_nrc0_ls1598_ls0504_rep1_model_0.cif
Chain information for fold_nrc0_ls1598_ls0504_rep1_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls2655_rep1/fold_nrc0_ls1598_ls2655_rep1_model_0.cif
Chain information for fold_nrc0_ls1598_ls2655_rep1_model_0.cif #2
---
Chain | Description
A | .
B | .
Computing secondary structure
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc1_ls2654_ls2655_rep1/fold_nrc1_ls2654_ls2655_rep1_model_0.cif
Chain information for fold_nrc1_ls2654_ls2655_rep1_model_0.cif #3
---
Chain | Description
A | .
B | .
Computing secondary structure
> open
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc1_ls2654_ls1741_rep1/fold_nrc1_ls2654_ls1741_rep1_model_0.cif
Chain information for fold_nrc1_ls2654_ls1741_rep1_model_0.cif #4
---
Chain | Description
A | .
B | .
Computing secondary structure
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> ui tool show Matchmaker
> matchmaker #2-4 to #1/A pairing bs
Computing secondary structure
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_nrc0_ls1598_ls0504_rep1_model_0.cif, chain A (#1) with
fold_nrc0_ls1598_ls2655_rep1_model_0.cif, chain A (#2), sequence alignment
score = 4543
RMSD between 808 pruned atom pairs is 0.945 angstroms; (across all 896 pairs:
1.355)
Matchmaker fold_nrc0_ls1598_ls0504_rep1_model_0.cif, chain A (#1) with
fold_nrc1_ls2654_ls2655_rep1_model_0.cif, chain A (#3), sequence alignment
score = 2800
RMSD between 582 pruned atom pairs is 1.059 angstroms; (across all 868 pairs:
2.994)
Matchmaker fold_nrc0_ls1598_ls0504_rep1_model_0.cif, chain A (#1) with
fold_nrc1_ls2654_ls1741_rep1_model_0.cif, chain A (#4), sequence alignment
score = 2801.4
RMSD between 665 pruned atom pairs is 0.925 angstroms; (across all 868 pairs:
2.826)
> color bypolymer
> hide #2 models
> hide #3 models
> hide #4 models
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls0504_rep1/fold_nrc0_ls1598_ls0504_rep1_full_data_0.json
> alphafold contacts #1:/A to #1:/B
Missing or invalid "atoms" argument: only initial part "#1" of atom specifier
valid
> alphafold contacts #1/A toAtoms #1/B
Found 12 residue or atom pairs within distance 3
> alphafold contacts #1/A toAtoms #1/B distance 3.5
Found 34 residue or atom pairs within distance 3.5
> chimerax
Unknown command: chimerax
> ui tool show Shell
> ui tool show "Command Line Interface"
> ui windowfill toggle
> toolshed show
> runscript
> /Users/toghani/Desktop/sensor_helper_specificity/scrtipts/extract_contacts.py
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls0504_rep1/fold_nrc0_ls1598_ls0504_rep1_model_0.cif
> --cutoff 3.5 --outdir
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/test.csv
> runscript
> /Users/toghani/Desktop/sensor_helper_specificity/scrtipts/extract_contacts.py
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls0504_rep1/fold_nrc0_ls1598_ls0504_rep1_model_0.cif
> --cutoff 3.5 --outdir
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/
> alphafold contacts #1/A toAtoms #1/B distance 3.5 outputFile
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/Ls1598_Ls504.csv
Found 34 residue or atom pairs within distance 3.5
> alphafold contacts #1/A toAtoms #1/B distance 3.5 outputFile
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/Ls1598_Ls504.txt
Found 34 residue or atom pairs within distance 3.5
> alphafold contacts #2/A toAtoms #2/B distance 3.5 outputFile
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/Ls1598_Ls2655.txt
Structure fold_nrc0_ls1598_ls2655_rep1_model_0.cif #2 does not have PAE data
opened
> ui tool show "AlphaFold Error Plot"
> alphafold pae #2 file
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc0_ls1598_ls2655_rep1/fold_nrc0_ls1598_ls2655_rep1_full_data_0.json
> ui tool show "AlphaFold Error Plot"
> alphafold pae #3 file
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc1_ls2654_ls2655_rep1/fold_nrc1_ls2654_ls2655_rep1_full_data_0.json
> ui tool show "AlphaFold Error Plot"
> alphafold pae #4 file
> /Users/toghani/Desktop/sensor_helper_specificity/sturctures/AF3_lettuce/Analysis/Extracted_Models/rep1/nrc1_ls2654_ls1741_rep1/fold_nrc1_ls2654_ls1741_rep1_full_data_0.json
> alphafold contacts #2/A toAtoms #2/B distance 3.5 outputFile
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/Ls1598_Ls2655.txt
Found 32 residue or atom pairs within distance 3.5
> alphafold contacts #3/A toAtoms #3/B distance 3.5 outputFile
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/Ls2654_Ls2655.txt
Found 35 residue or atom pairs within distance 3.5
> alphafold contacts #4/A toAtoms #4/B distance 3.5 outputFile
> /Users/toghani/Desktop/sensor_helper_specificity/analysis/lettuce/contacts/Ls2654_1741.txt
Found 35 residue or atom pairs within distance 3.5
> hide #1.1 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> color #1,2/A #C0C0C0
> color #1,2/A:1-127 #68B9E8
> color #1,2/A #C0C0C0
> color #1,2/A:1-126 #68B9E8
> color #1,2/A:137-306 #A7C32A
> color #1,2/A #C0C0C0
> color #1,2/A:1-126 #68B9E8
> color #1,2/A:158-305 #A7C32A
> color #1 #C0C0C0
> color #1:1-136 #68B9E8
> color #1:154-301 #A7C32A
> color #1:319-405 #0F612C
> color #1 #C0C0C0
> color #1:1-136 #68B9E8
> color #1:154-301 #A7C32A
> color #1:319-402 #0F612C
> color #1/A,B #C0C0C0
> color #1/A,B:1-136 #68B9E8
> color #1/A,B:154-305 #A7C32A
> color #1/A,B:319-402 #0F612C
> color #1/A,B:406-491 #CE6EA8
> color #1/A,B #C0C0C0
> color #1/A,B:1-136 #68B9E8
> color #1/A,B:154-305 #A7C32A
> color #1/A,B:319-402 #0F612C
> color #1/A,B:406-494 #CE6EA8
> color #1/A,B #C0C0C0
> color #1/A,B:1-136 #68B9E8
> color #1/A,B:154-305 #A7C32A
> color #1/A,B:319-402 #0F612C
> color #1/A,B:406-494 #CE6EA8
> color #1/A,B:499-896 #CE6EA8
> color #1/A,B #C0C0C0
> color #1/A,B:1-136 #68B9E8
> color #1/A,B:154-305 #A7C32A
> color #1/A,B:319-402 #0F612C
> color #1/A,B:406-494 #CE6EA8
> color #1/A,B:499-896 #41337A
> color #!1 bychain
> color #!1 bypolymer
> color #1,2/A #C0C0C0
> color #1,2/A:1-136 #68B9E8
> color #1,2/A:154-305 #A7C32A
> color #1,2/A:319-402 #0F612C
> color #1,2/A:406-494 #CE6EA8
> color #1,2/A:499-896 #41337A
> color #1,2/A #C0C0C0
> color #1,2/A:154-305 #EE6352
> color #1,2/A:499-896 #59CD90
> color #1/B #C0C0C0
> color #1/B:99-260 #FAC05E
> color #1/B:487-879 #3FA7D6
> color #1/B #C0C0C0
> color #1/B:113-254 #FAC05E
> color #1/B:487-879 #3FA7D6
> show #1.1 models
> hide #1.1 models
> show #1.1 models
> select #1/B:116-130
121 atoms, 120 bonds, 15 residues, 1 model selected
> open /Users/toghani/Desktop/structures/cryo/NbNRC2/8rfh.cif format mmcif
8rfh.cif title:
CryoEM structure of the plant helper NLR NRC2 in its resting state [more
info...]
Chain information for 8rfh.cif #5
---
Chain | Description | UniProt
A B | NRC2a | A0A0S3ANR1_NICBE 1-886
Non-standard residues in 8rfh.cif #5
---
ADP — adenosine-5'-diphosphate
> ui tool show Matchmaker
> matchmaker #!5 to #1/A pairing bs
Computing secondary structure
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_nrc0_ls1598_ls0504_rep1_model_0.cif, chain A (#1) with
8rfh.cif, chain A (#5), sequence alignment score = 2295.5
RMSD between 384 pruned atom pairs is 1.109 angstroms; (across all 715 pairs:
6.245)
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #1.1 models
> hide #!1 models
> select add #1
14332 atoms, 14640 bonds, 34 pseudobonds, 1775 residues, 2 models selected
> select subtract #1
Nothing selected
> select add #5
11802 atoms, 12056 bonds, 2 pseudobonds, 1462 residues, 3 models selected
> show #!5 models
> color (#!5 & sel) cyan
> select subtract #5
Nothing selected
> show #!1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!1 models
> show #!1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #1.1 models
> alphafold contacts #1/A toAtoms #1/B distance 3.5
Found 34 residue or atom pairs within distance 3.5
> hide #1.1 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!3 models
> show #!4 models
> hide #!3 models
> show #!5 models
> hide #!5 models
> show #!1 models
> hide #!4 models
> show #1.1 models
> show #!2 models
> hide #1.1 models
> show #!3 models
> show #!4 models
> show #!5 models
> hide #!5 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> show #1.1 models
> select #1/B:113-254
1171 atoms, 1193 bonds, 142 residues, 1 model selected
> select ~sel #1/B
Expected a keyword
> select #1/B:1-115,255-879
5947 atoms, 6076 bonds, 740 residues, 1 model selected
> hide sel traget ac
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide sel traget ca
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide sel target ca
> select up
6018 atoms, 6147 bonds, 749 residues, 1 model selected
> select up
7094 atoms, 7247 bonds, 879 residues, 1 model selected
> select up
14332 atoms, 14640 bonds, 1775 residues, 1 model selected
> select down
7094 atoms, 7247 bonds, 879 residues, 1 model selected
> select down
6018 atoms, 6147 bonds, 749 residues, 1 model selected
> select down
5947 atoms, 6076 bonds, 740 residues, 1 model selected
> select down
5947 atoms, 6076 bonds, 740 residues, 1 model selected
> select down
5947 atoms, 6076 bonds, 740 residues, 1 model selected
> select down
5947 atoms, 6076 bonds, 740 residues, 1 model selected
> select #1/B:113-254
1171 atoms, 1193 bonds, 142 residues, 1 model selected
> show target s
> hide target s
> select show target s
Expected an objects specifier or a keyword
> show sel target s
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for fold_nrc0_ls1598_ls0504_rep1_model_0.cif_B SES surface
#1.3: minimum, -18.77, mean -0.73, maximum 27.91
To also show corresponding color key, enter the above coulombic command and
add key true
> hide sel target s
> select subtract #1.3
1 model selected
> hide #1.3 models
> hide #1.2 models
> hide #1.1 models
> show #1.1 models
> hide #1.1 models
> show #1.2 models
> select add #1.2
7238 atoms, 896 residues, 1 model selected
> select subtract #1.2
1 model selected
> hide #1.2 models
> close #1.2
> close #1.3
> show #1.1 models
>
> sel,#1/A:206,236,237,260,261,262,549,554,555,557,578,579,580,582,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
Unknown command:
sel,#1/A:206,236,237,260,261,262,549,554,555,557,578,579,580,582,619,620,622,695,739,764,789,813,836,860,893
#1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
> show #1.1 models
> select
> #1/A:206,236,237,260,261,262,549,554,555,557,578,579,580,582,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
423 atoms, 398 bonds, 34 pseudobonds, 47 residues, 2 models selected
> select ~sel
68503 atoms, 69906 bonds, 104 pseudobonds, 8484 residues, 10 models selected
> select subtract #2
54160 atoms, 55261 bonds, 72 pseudobonds, 6708 residues, 16 models selected
> select subtract #3
39981 atoms, 40790 bonds, 37 pseudobonds, 4952 residues, 12 models selected
> select subtract #4
25711 atoms, 26230 bonds, 2 pseudobonds, 3190 residues, 8 models selected
> select ~sel #1
Expected a keyword
> select #1 ~sel
Expected a keyword
> select
> #1/A:206,236,237,260,261,262,549,554,555,557,578,579,580,582,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
423 atoms, 398 bonds, 34 pseudobonds, 47 residues, 2 models selected
> select ~sel & ##selected
13909 atoms, 14242 bonds, 1728 residues, 1 model selected
> transparency sel 80 target c
> select add #1
14332 atoms, 14640 bonds, 34 pseudobonds, 1775 residues, 2 models selected
> select subtract #1
Nothing selected
> graphics silhouettes false
> graphics silhouettes true
> select
> #1/A:206,236,237,260,261,262,549,554,555,557,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
387 atoms, 363 bonds, 28 pseudobonds, 43 residues, 2 models selected
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
360 atoms, 338 bonds, 24 pseudobonds, 40 residues, 2 models selected
> select ~sel & ##selected
13972 atoms, 14302 bonds, 10 pseudobonds, 1735 residues, 2 models selected
> transparency sel 80 target cas
> select add #1.1
13972 atoms, 14302 bonds, 34 pseudobonds, 1735 residues, 2 models selected
> select subtract #1.1
13972 atoms, 14302 bonds, 1735 residues, 1 model selected
> select sbtract
Expected an objects specifier or a keyword
> select subtract
Nothing selected
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,771,803,772,801,799,127,125,121,124,126,159,162,213
360 atoms, 338 bonds, 24 pseudobonds, 40 residues, 2 models selected
> show sel target s
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,127,125,121,124,126,159,162,213
317 atoms, 298 bonds, 24 pseudobonds, 35 residues, 2 models selected
> select ~sel & ##selected
14015 atoms, 14342 bonds, 10 pseudobonds, 1740 residues, 2 models selected
> transparency sel 80 target c
> select subtract #1.3
7071 atoms, 7235 bonds, 878 residues, 3 models selected
> select subtract #1.2
1 model selected
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,127,125,121,124,126,159,162,213
317 atoms, 298 bonds, 24 pseudobonds, 35 residues, 2 models selected
> select ~sel & ##selected
14015 atoms, 14342 bonds, 10 pseudobonds, 1740 residues, 2 models selected
> hide sel surfaces
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,127,125,121,124,126,159,162,213
317 atoms, 298 bonds, 24 pseudobonds, 35 residues, 2 models selected
> hide sel surfaces
> show sel atoms
> select subtract
Nothing selected
> hide #1.1 models
> hide #1.2 models
> hide #1.3 models
> select #1/B:114-131,151-165,197-217,230-241 #1/A:200-213,231-241,257-265
843 atoms, 857 bonds, 9 pseudobonds, 100 residues, 2 models selected
> select add #1
14332 atoms, 14640 bonds, 34 pseudobonds, 1775 residues, 4 models selected
> select subtract #1
2 models selected
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,127,125,121,124,126,159,162,213
317 atoms, 298 bonds, 24 pseudobonds, 35 residues, 2 models selected
> hide sel atoms
> select add #1
14332 atoms, 14640 bonds, 34 pseudobonds, 1775 residues, 4 models selected
> select subtract #1
2 models selected
> ui tool show "Side View"
> save
> /Users/toghani/Desktop/sensor_helper_specificity/figures/raw/LsNRC0_Ls0504_top.png
> width 3000 height 2483 supersample 4 transparentBackground true
> select
> #1/A:206,236,237,260,261,262,549,619,620,622,695,739,764,789,813,836,860,893
> #1/B:207,211,232,258,200,233,204,208,130,127,125,121,124,126,159,162,213
317 atoms, 298 bonds, 24 pseudobonds, 35 residues, 2 models selected
> select ~sel & ##selected
14015 atoms, 14342 bonds, 10 pseudobonds, 1740 residues, 2 models selected
> transparency sel 60 target c
> select add #1
14332 atoms, 14640 bonds, 34 pseudobonds, 1775 residues, 4 models selected
> select subtract #1
2 models selected
> save
> /Users/toghani/Desktop/sensor_helper_specificity/figures/raw/LsNRC0_Ls0504_top.png
> width 3000 height 2483 supersample 4 transparentBackground true
> color #1/B #C0C0C0 target cas
> color #1/B:113-254 #FAC05E target cas
> color #1/B:487-879 #3FA7D6 target cas
> color #1,2/A #C0C0C0 target cas
> color #1,2/A:154-305 #EE6352 target cas
> color #1,2/A:499-896 #59CD90 target cas
> show #1 target s
> undo
> color #1,2/A #C0C0C0 target cas
> color #1,2/A:154-305 #EE6352 target cas
> color #1,2/A:499-896 #59CD90 target cas
> hide #!1 surfaces
> color #1/B #C0C0C0 target cas
> color #1/B:113-254 #FAC05E target cas
> color #1/B:487-879 #3FA7D6 target cas
> select #1/B:1-115,255-879
5947 atoms, 6076 bonds, 740 residues, 1 model selected
> hide sel target ca
> select #1/B:116-254
1147 atoms, 1169 bonds, 139 residues, 1 model selected
> show sel target s
> transparency sel 80 target s
> hide #1.3 models
> show #1.3 models
> select subtract #1.3
1 model selected
> hide #!1 surfaces
> show #1.1 models
> hide #1.2 models
> hide #1.3 models
> hide #1.1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> hide #!5 models
> hide #!1 models
> hide #!3 models
> hide #!4 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M4 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac16,8
Model Number: Z1FF000HXB/A
Chip: Apple M4 Pro
Total Number of Cores: 14 (10 performance and 4 efficiency)
Memory: 48 GB
System Firmware Version: 11881.101.1
OS Loader Version: 11881.101.1
Software:
System Software Overview:
System Version: macOS 15.4 (24E248)
Kernel Version: Darwin 24.4.0
Time since boot: 4 days, 7 hours, 58 minutes
Graphics/Displays:
Apple M4 Pro:
Chipset Model: Apple M4 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 20
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
MSI G271:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 144.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-PICKLUSTER: 0.5
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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