![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17375 closed defect (duplicate)
Crash moving window between screens
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000203d48f40 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, PIL._imagingmath, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif (total: 57)
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{
"uptime" : 1700000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 505,
"deployVersion" : 210,
"modelCode" : "Mac14,7",
"coalitionID" : 4691,
"osVersion" : {
"train" : "macOS 14.6.1",
"build" : "23G93",
"releaseType" : "User"
},
"captureTime" : "2025-04-14 15:28:16.4130 -0500",
"codeSigningMonitor" : 1,
"incident" : "CC16A03D-9825-4EA6-978A-76DDBE17BBB8",
"pid" : 40011,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-04-13 13:38:09.1422 -0500",
"procStartAbsTime" : 41842429750593,
"procExitAbsTime" : 42557754671139,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"196C1F65-08EB-5B0B-A775-7FD2C1C1733F","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "69C4FDCB-8FA8-9030-32AB-19B3569E58C9",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRd+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWzg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 1532,
"sleepWakeUUID" : "994F11C2-A590-4492-BC5D-A29B3769706A",
"sip" : "enabled",
"vmRegionInfo" : "0x4235303f5348 is not in any region. Bytes after previous region: 72315173819209 Bytes before following region: 32756906110136\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x0000c235303f5348","rawCodes":[1,213533698511688],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000c235303f5348 -> 0x00004235303f5348 (possible pointer authentication failure)"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":40011},
"vmregioninfo" : "0x4235303f5348 is not in any region. Bytes after previous region: 72315173819209 Bytes before following region: 32756906110136\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
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"faultingThread" : 0,
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"name" : "fcntl.cpython-311-darwin.so"
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"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
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"name" : "binascii.cpython-311-darwin.so"
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/Wan01305/Downloads/cryosparc_P73_J458_map_sharp.mrc
Opened cryosparc_P73_J458_map_sharp.mrc as #1, grid size 384,384,384, pixel
0.885, shown at level 0.00073, step 2, values float32
> volume #1 step 1
> volume #1 level 0.01
> set bgColor white
> surface dust #1 size 8.85
> open "/Users/Wan01305/Downloads/cryosparc_P73_J455_map_sharp (1).mrc"
Opened cryosparc_P73_J455_map_sharp (1).mrc as #2, grid size 384,384,384,
pixel 0.885, shown at level 0.000753, step 2, values float32
> volume #2 step 1
> volume #2 level 0.0001
> volume #2 level 0.01
> surface dust #1 size 8.85
> surface dust #2 size 8.85
> select add #2
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.70936,0.35087,-0.6113,90.297,0.55095,-0.81695,0.17043,196.18,-0.4396,-0.4577,-0.77283,451.82
> view matrix models
> #2,0.5227,0.74199,0.4198,-124.52,-0.65331,0.032276,0.7564,138.81,0.54769,-0.66963,0.50162,114.53
> view matrix models
> #2,0.23005,0.93489,-0.27029,6.7345,-0.94078,0.28471,0.18404,238.82,0.24901,0.21194,0.94503,-66.021
> view matrix models
> #2,0.87166,-0.33999,-0.35302,139.09,-0.45782,-0.82196,-0.3388,442.73,-0.17498,0.45694,-0.87212,270.33
> view matrix models
> #2,0.99025,0.1349,-0.034699,-15.671,0.13661,-0.98922,0.052664,310.98,-0.027221,-0.05689,-0.99801,356.95
> view matrix models
> #2,0.84297,-0.47635,-0.24998,149.31,0.073736,-0.35798,0.93081,61.777,-0.53288,-0.80308,-0.26664,438.86
> view matrix models
> #2,0.8527,-0.44422,-0.27491,136.79,0.062284,-0.43603,0.89777,95.09,-0.51868,-0.78265,-0.34414,461.86
> view matrix models
> #2,0.57087,-0.65418,-0.49614,255.02,0.13755,-0.51954,0.8433,106.96,-0.80943,-0.54966,-0.20661,443.89
> view matrix models
> #2,0.57087,-0.65418,-0.49614,265.66,0.13755,-0.51954,0.8433,99.219,-0.80943,-0.54966,-0.20661,441.8
> view matrix models
> #2,0.57087,-0.65418,-0.49614,245.65,0.13755,-0.51954,0.8433,136.65,-0.80943,-0.54966,-0.20661,414.11
> view matrix models
> #2,0.55027,-0.66527,-0.5046,292.81,0.13028,-0.52851,0.83887,192.82,-0.82476,-0.52734,-0.20415,397.13
> view matrix models
> #2,0.55027,-0.66527,-0.5046,267.78,0.13028,-0.52851,0.83887,200.91,-0.82476,-0.52734,-0.20415,404.62
> view matrix models
> #2,0.55027,-0.66527,-0.5046,278.29,0.13028,-0.52851,0.83887,199.69,-0.82476,-0.52734,-0.20415,401.23
> view matrix models
> #2,-0.33767,-0.83308,-0.43813,435.02,0.025889,-0.47351,0.88041,199.51,-0.94091,0.28594,0.18146,213.67
> view matrix models
> #2,-0.8951,-0.44585,0.0044625,380.07,0.22582,-0.44468,0.86675,165.53,-0.38446,0.77684,0.49872,-12.364
> view matrix models
> #2,-0.24958,-0.89318,-0.37409,420.53,-0.75728,-0.060739,0.65025,291.05,-0.60351,0.44558,-0.66123,277.95
> view matrix models
> #2,-0.15051,-0.4976,-0.85425,419.49,-0.8559,0.49802,-0.1393,346.12,0.49475,0.71019,-0.50085,32.661
> view matrix models
> #2,0.14353,-0.11029,-0.98348,329.04,-0.88169,0.43709,-0.17769,367.22,0.44947,0.89263,-0.03451,-71.587
> view matrix models
> #2,0.14353,-0.11029,-0.98348,356.07,-0.88169,0.43709,-0.17769,380.6,0.44947,0.89263,-0.03451,-74.971
> view matrix models
> #2,0.34659,-0.85509,-0.38561,349.44,-0.82833,-0.086098,-0.55359,526.55,0.44017,0.51128,-0.73813,112.71
> view matrix models
> #2,0.38003,-0.82585,-0.4166,344.5,-0.69907,0.0385,-0.71402,512.41,0.60571,0.56258,-0.56269,47.817
> view matrix models
> #2,0.38003,-0.82585,-0.4166,311.3,-0.69907,0.0385,-0.71402,389.8,0.60571,0.56258,-0.56269,66.946
> view matrix models
> #2,0.38003,-0.82585,-0.4166,304.37,-0.69907,0.0385,-0.71402,394.06,0.60571,0.56258,-0.56269,71.172
> view matrix models
> #2,0.38003,-0.82585,-0.4166,303.96,-0.69907,0.0385,-0.71402,396.62,0.60571,0.56258,-0.56269,69.22
> view matrix models
> #2,0.15658,-0.96276,0.2204,253.2,-0.96851,-0.10593,0.22533,302.48,-0.19359,-0.24874,-0.94903,400.22
> volume flip #1
Opened cryosparc_P73_J458_map_sharp.mrc z flip as #3, grid size 384,384,384,
pixel 0.885, shown at step 1, values float32
> surface dust #2 size 8.85
> view matrix models
> #2,0.15658,-0.96276,0.2204,181.66,-0.96851,-0.10593,0.22533,230.59,-0.19359,-0.24874,-0.94903,378.15
> view matrix models
> #2,0.030336,-0.908,-0.41786,301.61,0.69479,-0.28138,0.66188,-75.224,-0.71857,-0.3104,0.62234,201.43
> view matrix models
> #2,0.15771,-0.7329,-0.6618,293.43,0.70001,-0.38973,0.59841,-46.552,-0.6965,-0.55764,0.45157,269.71
> view matrix models
> #2,0.88248,-0.20679,-0.42245,48.31,0.46341,0.22866,0.85613,-159.8,-0.080439,-0.95129,0.29762,267.03
> view matrix models
> #2,0.87313,-0.27013,-0.4058,65.405,0.46406,0.20562,0.86161,-154.28,-0.14931,-0.94061,0.30489,276.3
> view matrix models
> #2,0.87865,0.021139,-0.477,26.764,0.44795,0.30933,0.83884,-165.65,0.16528,-0.95072,0.26232,235.97
> view matrix models
> #2,0.85864,0.1206,-0.49819,16.466,0.43477,0.34344,0.83248,-168.35,0.2715,-0.9314,0.24245,219.4
> view matrix models
> #2,0.83533,0.19688,-0.51329,9.6231,0.42186,0.36912,0.82812,-169.98,0.35251,-0.90829,0.22528,205.67
> view matrix models
> #2,0.88764,-0.13113,-0.44147,45.393,0.46054,0.25582,0.84998,-160.35,0.0014762,-0.95779,0.28747,258.57
> view matrix models
> #2,0.88766,-0.1304,-0.44166,45.295,0.4605,0.25608,0.84992,-160.38,0.0022744,-0.95782,0.28736,258.47
> view matrix models
> #2,0.88328,-0.19928,-0.42438,54.84,0.46323,0.23137,0.8555,-157.53,-0.072298,-0.95224,0.29668,267.62
> select add #3
4 models selected
> view matrix models
> #2,0.88328,-0.19928,-0.42438,110.63,0.46323,0.23137,0.8555,-138.84,-0.072298,-0.95224,0.29668,286.3,#3,1,0,0,55.791,0,1,0,18.682,0,0,1,18.678
> select subtract #3
2 models selected
> view matrix models
> #2,0.88328,-0.19928,-0.42438,110.28,0.46323,0.23137,0.8555,-135.73,-0.072298,-0.95224,0.29668,291.16
> view matrix models
> #2,0.60829,-0.66686,-0.43045,234.73,0.76419,0.63859,0.090594,-121.58,0.21447,-0.38405,0.89806,45.416
> view matrix models
> #2,0.70366,-0.54547,-0.45532,203.2,0.69077,0.67526,0.25856,-145.18,0.16642,-0.49647,0.85195,80.164
> view matrix models
> #2,0.70366,-0.54547,-0.45532,260.37,0.69077,0.67526,0.25856,-124.67,0.16642,-0.49647,0.85195,110.34
> view matrix models
> #2,0.70366,-0.54547,-0.45532,283.26,0.69077,0.67526,0.25856,-101.4,0.16642,-0.49647,0.85195,97.412
> fitmap #2 inMap #3
Fit map cryosparc_P73_J455_map_sharp (1).mrc in map
cryosparc_P73_J458_map_sharp.mrc z flip using 186728 points
correlation = 0.2765, correlation about mean = 0.05929, overlap = 2326
steps = 184, shift = 5.76, angle = 4.98 degrees
Position of cryosparc_P73_J455_map_sharp (1).mrc (#2) relative to
cryosparc_P73_J458_map_sharp.mrc z flip (#3) coordinates:
Matrix rotation and translation
0.65889510 -0.61604357 -0.43167992 243.21845106
0.73973747 0.63480854 0.22317389 -109.89456175
0.13654926 -0.46637799 0.87398275 73.59997307
Axis -0.42467076 -0.34995238 0.83497789
Axis point 270.08616444 242.93288098 0.00000000
Rotation angle (degrees) 54.27869064
Shift along axis -3.37555211
> view matrix models
> #2,0.6589,-0.61604,-0.43168,286.42,0.73974,0.63481,0.22317,-86.372,0.13655,-0.46638,0.87398,86.5
> view matrix models
> #2,0.6589,-0.61604,-0.43168,281.26,0.73974,0.63481,0.22317,-86.978,0.13655,-0.46638,0.87398,86.985
> view matrix models
> #2,0.6589,-0.61604,-0.43168,279.09,0.73974,0.63481,0.22317,-86.032,0.13655,-0.46638,0.87398,88.068
> view matrix models
> #2,0.87892,-0.43624,-0.19284,172.71,0.38539,0.88775,-0.25174,7.6624,0.28102,0.14694,0.94839,-52.649
> fitmap #2 inMap #3
Fit map cryosparc_P73_J455_map_sharp (1).mrc in map
cryosparc_P73_J458_map_sharp.mrc z flip using 186728 points
correlation = 0.9206, correlation about mean = 0.8652, overlap = 1.345e+04
steps = 576, shift = 11, angle = 20.9 degrees
Position of cryosparc_P73_J455_map_sharp (1).mrc (#2) relative to
cryosparc_P73_J458_map_sharp.mrc z flip (#3) coordinates:
Matrix rotation and translation
0.87082828 -0.49130728 -0.01659069 104.13584134
0.49148666 0.86947103 0.04960836 -69.72422264
-0.00994782 -0.05135446 0.99863094 8.77504792
Axis -0.10219026 -0.00672362 0.99474215
Axis point 185.16614551 162.97347251 0.00000000
Rotation angle (degrees) 29.60345660
Shift along axis -1.44395958
> select add #3
4 models selected
> view matrix models
> #2,0.88995,-0.45595,-0.0099753,149.56,0.42986,0.84593,-0.31563,26.139,0.15235,0.27661,0.94883,-47.065,#3,0.99917,0.040465,0.0046005,48.291,-0.036038,0.93113,-0.36291,97.998,-0.018969,0.36245,0.93181,-27.995
> view matrix models
> #2,0.88995,-0.45595,-0.0099753,149.72,0.42986,0.84593,-0.31563,57.234,0.15235,0.27661,0.94883,-74.303,#3,0.99917,0.040465,0.0046005,48.45,-0.036038,0.93113,-0.36291,129.09,-0.018969,0.36245,0.93181,-55.232
> surface dust #2 size 8.85
> surface dust #3 size 8.85
> select subtract #3
2 models selected
> select add #3
4 models selected
> select subtract #2
2 models selected
> select subtract #3
Nothing selected
> open /Users/Wan01305/Downloads/cryosparc_P73_J457_map_sharp.mrc
Opened cryosparc_P73_J457_map_sharp.mrc as #4, grid size 384,384,384, pixel
0.885, shown at level 0.00081, step 2, values float32
> volume #4 step 1
> volume #4 level 0.001
> volume #4 level 0.01
> surface dust #2 size 8.85
> surface dust #3 size 8.85
> surface dust #4 size 8.85
> select add #4
2 models selected
> view matrix models
> #4,0.96787,0.25106,0.013809,-40.996,-0.13288,0.55734,-0.81958,239.63,-0.21346,0.79141,0.5728,-30.171
> view matrix models
> #4,0.96794,0.25106,0.0081138,-22.861,-0.13697,0.55461,-0.82076,244,-0.21056,0.79333,0.57122,-33.436
> view matrix models
> #4,0.064186,-0.98771,0.14253,320.99,0.99716,0.069107,0.02984,-4.4649,-0.039323,0.14021,0.98934,-18.927
> view matrix models
> #4,0.069473,-0.98944,0.12717,323.04,0.99601,0.075959,0.04688,-8.3858,-0.056045,0.12341,0.99077,-13.456
> view matrix models
> #4,0.069473,-0.98944,0.12717,366.94,0.99601,0.075959,0.04688,16.971,-0.056045,0.12341,0.99077,0.8082
> view matrix models
> #4,0.069473,-0.98944,0.12717,361.25,0.99601,0.075959,0.04688,35.442,-0.056045,0.12341,0.99077,-23.101
> view matrix models
> #4,0.069473,-0.98944,0.12717,358.19,0.99601,0.075959,0.04688,40.101,-0.056045,0.12341,0.99077,-17.969
> view matrix models
> #4,0.085924,-0.9845,0.15288,351.08,0.99227,0.098347,0.075629,24.719,-0.089493,0.1452,0.98535,-13.058
> view matrix models
> #4,0.085924,-0.9845,0.15288,351.22,0.99227,0.098347,0.075629,24.688,-0.089493,0.1452,0.98535,-12.885
> view matrix models
> #4,0.11538,-0.97522,-0.18879,403.1,0.99331,0.11424,0.016959,31.76,0.0050283,-0.18948,0.98187,30.64
> view matrix models
> #4,0.077157,-0.98976,0.12011,359.2,0.99498,0.08414,0.054187,30.392,-0.063738,0.11533,0.99128,-12.939
> view matrix models
> #4,0.077157,-0.98976,0.12011,358.99,0.99498,0.08414,0.054187,33.562,-0.063738,0.11533,0.99128,-12.531
> view matrix models
> #4,0.077157,-0.98976,0.12011,360.55,0.99498,0.08414,0.054187,30.084,-0.063738,0.11533,0.99128,-12.928
> view matrix models
> #4,0.077157,-0.98976,0.12011,360.36,0.99498,0.08414,0.054187,32.499,-0.063738,0.11533,0.99128,-11.639
> view matrix models
> #4,0.082938,-0.98835,0.12759,357.88,0.99525,0.088704,0.040184,34.589,-0.051034,0.12365,0.99101,-14.898
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 3 maps.
> hide #!2 models
> fitmap #4 inMap #3
Fit map cryosparc_P73_J457_map_sharp.mrc in map
cryosparc_P73_J458_map_sharp.mrc z flip using 195345 points
correlation = 0.889, correlation about mean = 0.8157, overlap = 1.354e+04
steps = 920, shift = 9, angle = 27.9 degrees
Position of cryosparc_P73_J457_map_sharp.mrc (#4) relative to
cryosparc_P73_J458_map_sharp.mrc z flip (#3) coordinates:
Matrix rotation and translation
0.28270281 -0.95781806 -0.05161084 287.19486003
0.95920603 0.28238854 0.01343513 -43.44997686
0.00170590 -0.05330358 0.99857689 7.80750422
Axis -0.03477919 -0.02778467 0.99900872
Axis point 172.80475562 170.39599447 0.00000000
Rotation angle (degrees) 73.63029881
Shift along axis -0.98139789
> select subtract #4
Nothing selected
> show #!2 models
> hide #!4 models
> hide #!3 models
> show #!4 models
> open /Users/Wan01305/Downloads/cryosparc_P73_J456_map_sharp.mrc
Opened cryosparc_P73_J456_map_sharp.mrc as #5, grid size 384,384,384, pixel
0.885, shown at level 0.000712, step 2, values float32
> volume #5 step 1
> volume #5 level 0.01
> surface dust #2 size 8.85
> surface dust #4 size 8.85
> surface dust #5 size 8.85
> select add #5
2 models selected
> view matrix models #5,1,0,0,63.483,0,1,0,16.545,0,0,1,3.2683
> view matrix models
> #5,0.99972,0.022715,0.0063864,53.895,-0.02279,0.99967,0.011923,36.677,-0.0061134,-0.012066,0.99991,-13.208
> view matrix models
> #5,0.90895,-0.3425,-0.23769,173.13,0.36302,0.36993,0.8552,-54.882,-0.20498,-0.86362,0.46058,257.82
> view matrix models
> #5,0.9832,-0.18179,0.016279,90.657,0.17729,0.93007,-0.32176,73.905,0.043351,0.31924,0.94668,-70.035
> view matrix models
> #5,0.98134,-0.19047,0.026197,86.498,0.18814,0.9233,-0.33483,84.02,0.039587,0.33352,0.94191,-73.146
> view matrix models
> #5,0.98134,-0.19047,0.026197,86.462,0.18814,0.9233,-0.33483,86.83,0.039587,0.33352,0.94191,-73.799
> view matrix models
> #5,0.97184,0.15578,-0.17679,64.616,-0.22237,0.85447,-0.4695,185.05,0.077922,0.4956,0.86505,-95.626
> view matrix models
> #5,0.79823,-0.56187,-0.2171,224.25,0.42565,0.78117,-0.45672,94.907,0.42622,0.27216,0.86271,-110.26
> view matrix models
> #5,0.63931,-0.73338,-0.23114,281.37,0.47536,0.61322,-0.63087,149.09,0.60441,0.29345,0.74066,-110.77
> view matrix models
> #5,0.17809,-0.97691,-0.11805,381.12,0.32,0.17094,-0.93187,291.07,0.93053,0.12818,0.34305,-82.808
> view matrix models
> #5,0.76295,0.6316,-0.13783,11.412,-0.6458,0.75429,-0.11825,202.15,0.029277,0.17923,0.98337,-59.279
> view matrix models
> #5,0.82251,0.53391,-0.19598,29.057,-0.56759,0.79251,-0.2231,200.93,0.036203,0.29474,0.95489,-75.815
> view matrix models
> #5,0.82251,0.53391,-0.19598,20.133,-0.56759,0.79251,-0.2231,219.2,0.036203,0.29474,0.95489,-51.117
> view matrix models
> #5,0.86756,0.46856,-0.16668,19.649,-0.44853,0.59241,-0.66923,310.85,-0.21483,0.65536,0.72412,-36.438
> view matrix models
> #5,0.94861,0.30179,0.095173,-1.3951,-0.19514,0.79465,-0.57485,218.76,-0.24912,0.52674,0.8127,-23.158
> view matrix models
> #5,0.98221,0.044681,0.1824,23.775,-0.053342,0.99766,0.042855,57.128,-0.18006,-0.051823,0.98229,38.993
> view matrix models
> #5,0.98038,-0.02601,0.1954,34.266,0.011375,0.99707,0.075647,41.641,-0.1968,-0.07194,0.9778,45.88
> view matrix models
> #5,0.98038,-0.02601,0.1954,33.348,0.011375,0.99707,0.075647,41.117,-0.1968,-0.07194,0.9778,42
> view matrix models
> #5,0.98038,-0.02601,0.1954,31.71,0.011375,0.99707,0.075647,40.958,-0.1968,-0.07194,0.9778,41.955
> view matrix models
> #5,0.94656,-0.30715,-0.0984,135.72,0.28435,0.93871,-0.19484,54.235,0.15221,0.15645,0.97589,-52.079
> volume flip #5
Opened cryosparc_P73_J456_map_sharp.mrc z flip as #6, grid size 384,384,384,
pixel 0.885, shown at step 1, values float32
> select subtract #5
Nothing selected
> select add #6
2 models selected
> view matrix models
> #6,0.94656,-0.30715,-0.0984,134.67,0.28435,0.93871,-0.19484,47.655,0.15221,0.15645,0.97589,-55
> view matrix models
> #6,0.97871,-0.028525,-0.20328,100.6,0.06232,-0.90226,0.42666,286.61,-0.19558,-0.43024,-0.88127,417.75
> surface dust #6 size 8.85
> view matrix models
> #6,0.99825,-0.0044096,-0.059018,67.241,0.016854,-0.93475,0.35491,311.13,-0.056732,-0.35528,-0.93304,391.69
> hide #!6 models
> show #!6 models
> hide #!4 models
> fitmap #6 inMap #2
Fit map cryosparc_P73_J456_map_sharp.mrc z flip in map
cryosparc_P73_J455_map_sharp (1).mrc using 210802 points
correlation = 0.9001, correlation about mean = 0.8333, overlap = 1.491e+04
steps = 204, shift = 7.84, angle = 5.25 degrees
Position of cryosparc_P73_J456_map_sharp.mrc z flip (#6) relative to
cryosparc_P73_J455_map_sharp (1).mrc (#2) coordinates:
Matrix rotation and translation
0.88354664 -0.46788619 -0.02068457 103.38279106
-0.46825137 -0.88338594 -0.01923377 402.97632609
-0.00927324 0.02667951 -0.99960103 336.53754490
Axis 0.97044587 -0.24119543 -0.00771854
Axis point 0.00000000 212.28439844 171.13678994
Rotation angle (degrees) 178.64449794
Shift along axis 0.53377508
> show #!3 models
> hide #!6 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> close #5
> close #1
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!6 models
> select subtract #6
Nothing selected
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> hide #!6 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!6 models
> hide #!6 models
> show #!4 models
> hide #!4 models
> hide #!3 models
> show #!4 models
> show #!6 models
> hide #!4 models
> hide #!6 models
> show #!4 models
> hide #!4 models
> show #!2 models
> show #!4 models
> save "/Users/Wan01305/Documents/CCHFV paper/PITC and EC map from
> deepenhancer combine.cxs" includeMaps true
> hide #!4 models
> hide #!2 models
> show #!3 models
> open "/Users/Wan01305/Documents/CCHFV paper/apo model build files/apo map
> and model/output_J364-coot-2b_real_space_refined_028.pdb"
Chain information for output_J364-coot-2b_real_space_refined_028.pdb #1
---
Chain | Description
A | No description available
> select add #1
12013 atoms, 12209 bonds, 12 pseudobonds, 1504 residues, 2 models selected
> view matrix models
> #1,-0.33616,0.74737,-0.57309,196.73,-0.74829,0.15755,0.64439,168.69,0.57189,0.64546,0.50629,-128.99
> view matrix models
> #1,-0.60537,0.60747,-0.5143,258.04,-0.61803,0.04841,0.78466,141.55,0.50156,0.79286,0.34613,-115.6
> view matrix models
> #1,-0.60537,0.60747,-0.5143,318.05,-0.61803,0.04841,0.78466,183.39,0.50156,0.79286,0.34613,-116.98
> view matrix models
> #1,-0.60537,0.60747,-0.5143,305.08,-0.61803,0.04841,0.78466,190.83,0.50156,0.79286,0.34613,-122.81
> view matrix models
> #1,-0.47609,0.64356,-0.5993,290.17,-0.68227,0.15965,0.71345,191.19,0.55483,0.74856,0.36308,-127.67
> view matrix models
> #1,-0.66111,0.40865,-0.62924,368.82,-0.73694,-0.51121,0.44226,365.44,-0.14095,0.75609,0.63911,-55.609
> view matrix models
> #1,-0.51309,0.62446,-0.58889,298.18,-0.85574,-0.42543,0.29447,396.01,-0.066647,0.65503,0.75266,-69.942
> view matrix models
> #1,-0.58618,0.81014,0.007948,176.34,-0.75689,-0.55109,0.35131,391.44,0.28899,0.19991,0.93623,-82.295
> view matrix models
> #1,-0.99822,-0.045046,-0.038987,418.45,0.028278,-0.93427,0.35544,324.23,-0.052436,0.3537,0.93389,-53.399
> view matrix models
> #1,-0.98858,-0.14594,-0.037566,434.55,0.11953,-0.91119,0.39427,297.78,-0.091768,0.38528,0.91823,-49.53
> view matrix models
> #1,-0.98858,-0.14594,-0.037566,421.03,0.11953,-0.91119,0.39427,294.41,-0.091768,0.38528,0.91823,-49.568
> view matrix models
> #1,-0.98858,-0.14594,-0.037566,420.33,0.11953,-0.91119,0.39427,303.42,-0.091768,0.38528,0.91823,-45.007
> view matrix models
> #1,-0.73746,0.64568,0.19812,196.77,-0.5364,-0.73818,0.40911,383.82,0.4104,0.19543,0.89072,-93.665
> view matrix models
> #1,-0.7031,0.67246,0.23122,180.45,-0.58408,-0.73159,0.3516,400.7,0.40559,0.11216,0.90715,-80.908
> view matrix models
> #1,-0.7031,0.67246,0.23122,182.37,-0.58408,-0.73159,0.3516,394.7,0.40559,0.11216,0.90715,-76.933
> view matrix models
> #1,-0.93823,-0.33322,0.093163,424.38,0.28729,-0.90032,-0.32694,389.3,0.19282,-0.27999,0.94044,23.548
> fitmap #1 inMap #3
Fit molecule output_J364-coot-2b_real_space_refined_028.pdb (#1) to map
cryosparc_P73_J458_map_sharp.mrc z flip (#3) using 12013 atoms
average map value = 0.3737, steps = 128
shifted from previous position = 12.6
rotated from previous position = 11 degrees
atoms outside contour = 959, contour level = 0.01
Position of output_J364-coot-2b_real_space_refined_028.pdb (#1) relative to
cryosparc_P73_J458_map_sharp.mrc z flip (#3) coordinates:
Matrix rotation and translation
-0.99144059 -0.12970459 0.01490905 358.36278272
0.12967569 -0.99155224 -0.00289349 316.84840913
0.01515840 -0.00093539 0.99988467 -3.18134889
Axis 0.00754895 -0.00096131 0.99997104
Axis point 168.87623126 170.09184783 0.00000000
Rotation angle (degrees) 172.54809584
Shift along axis -0.78058089
> select subtract #1
Nothing selected
> ui mousemode right "translate selected models"
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> color #1 #db4423ff
> show #!2 models
> transparency #1-2 50
> ui tool show "Side View"
> select add #1
12013 atoms, 12209 bonds, 12 pseudobonds, 1504 residues, 2 models selected
> color zone #2 near sel & #1 distance 5.31
> color zone #2 near sel & #1 distance 2
> select subtract #1
Nothing selected
> hide #!2 models
> show #!4 models
> select add #4
2 models selected
> color zone #4 near sel & #1 distance 2
color zone: No atoms specified.
> select subtract #4
Nothing selected
> select add #4
2 models selected
> select add #1
12013 atoms, 12209 bonds, 12 pseudobonds, 1504 residues, 4 models selected
> color zone #4 near sel & #1 distance 2
> select add #4
12013 atoms, 12209 bonds, 12 pseudobonds, 1504 residues, 5 models selected
> select subtract #4
12013 atoms, 12209 bonds, 12 pseudobonds, 1504 residues, 2 models selected
> hide #!4 models
> show #!6 models
> color zone #6 near sel & #1 distance 2
> select subtract #1
Nothing selected
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!6 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!6 models
> volume #6 level 0.005
> volume #6 level 0.0005
> volume #6 level 0.0007
> volume #6 level 0.001
> hide #!6 models
> show #!4 models
> hide #!4 models
> show #!4 models
> volume #4 level 0.001
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> volume #4 level 0.01
> hide #!4 models
> show #!4 models
> volume #4 level 0.02
> volume #4 level 0.04
> hide #!4 models
> show #!6 models
> volume #6 level 0.01
> hide #!6 models
> show #!6 models
> volume #6 level 0.005
> volume #6 level 0.001
> volume #6 level 0.002
> hide #!6 models
> show #!6 models
> volume #6 level 0.01
> volume #4 level 0.01
> show #!4 models
> hide #!6 models
> hide #!4 models
> show #!2 models
> hide #!2 models
> show #!4 models
> hide #!4 models
> show #!6 models
> show #!4 models
> hide #!6 models
> show #!6 models
> hide #!4 models
> hide #!6 models
> show #!4 models
> show #!6 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!6 models
> show #!6 models
> hide #!4 models
> show #!4 models
> hide #!6 models
> show #!6 models
> hide #!4 models
> show #!4 models
> hide #!6 models
> show #!6 models
> hide #!4 models
> hide #!6 models
> show #!6 models
> show #!4 models
> hide #!6 models
> show #!6 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!6 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!2 models
> show #!4 models
> hide #!1 models
> transparency #2,4 0
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!1 models
> hide #!2 models
> hide #!4 models
> show surfaces
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!4 models
> show #!2 models
> hide #!1 models
> hide #!4 models
> show #!4 models
> hide #!2 models
> hide #!4 models
> show #!1 models
> hide surfaces
> show #!4 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!2 models
> hide #!4 models
> show surfaces
> show #!4 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,7
Model Number: Z16S0005DLL/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 10151.140.19
OS Loader Version: 10151.140.19
Software:
System Software Overview:
System Version: macOS 14.6.1 (23G93)
Kernel Version: Darwin 23.6.0
Time since boot: 68 days, 3 hours, 54 minutes
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
PHL 272P7VU:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between screens |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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