Opened 6 months ago

Closed 6 months ago

#17552 closed defect (not a bug)

Test crash

Reported by: pett Owned by: pett
Priority: normal Milestone:
Component: Platform Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.10.dev202504290649 (2025-04-29 06:49:05 UTC)
Description
Last time you used ChimeraX it crashed.
Called os.abort w/o doing anything before that.
Fatal Python error: Aborted

Thread 0x00001534 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\selectors.py", line 314 in _select
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\selectors.py", line 323 in select
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\asyncio\base_events.py", line 1884 in _run_once
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\asyncio\base_events.py", line 607 in run_forever
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\tornado\platform\asyncio.py", line 205 in start
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\iostream.py", line 92 in _thread_main
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000036e4 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 320 in wait
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 622 in wait
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\history.py", line 903 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\history.py", line 61 in only_when_enabled
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\decorator.py", line 235 in fun
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001c38 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000333c (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002308 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\connection.py", line 878 in wait
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00000808 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000007bc (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000039e8 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00003aa8 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000017f8 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001fdc (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002ed8 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002930 (most recent call first):
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\threading.py", line 995 in _bootstrap

Current thread 0x00002598 (most recent call first):
  File "C:\Users\pett\AppData\Local\Temp\ipykernel_2784\518143115.py", line 1 in 
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\interactiveshell.py", line 3577 in run_code
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\interactiveshell.py", line 3517 in run_ast_nodes
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\interactiveshell.py", line 3334 in run_cell_async
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\async_helpers.py", line 128 in _pseudo_sync_runner
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\interactiveshell.py", line 3130 in _run_cell
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\IPython\core\interactiveshell.py", line 3075 in run_cell
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\zmqshell.py", line 549 in run_cell
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\ipkernel.py", line 449 in do_execute
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\kernelbase.py", line 778 in execute_request
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\ipkernel.py", line 362 in execute_request
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\inprocess\ipkernel.py", line 81 in execute_request
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\kernelbase.py", line 437 in dispatch_shell
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\asyncio\events.py", line 80 in _run
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\asyncio\base_events.py", line 1922 in _run_once
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\asyncio\base_events.py", line 607 in run_forever
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\asyncio\base_events.py", line 640 in run_until_complete
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\jupyter_core\utils\__init__.py", line 165 in wrapped
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\inprocess\client.py", line 195 in _dispatch_to_kernel
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\ipykernel\inprocess\client.py", line 119 in execute
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\frontend_widget.py", line 288 in _execute
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\console_widget.py", line 680 in do_execute
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\history_console_widget.py", line 42 in do_execute
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\console_widget.py", line 605 in _trigger_is_complete_callback
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\console_widget.py", line 600 in _handle_is_complete_reply
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\base_frontend_mixin.py", line 138 in _dispatch
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\inprocess.py", line 46 in call_handlers
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\qtconsole\inprocess.py", line 42 in 
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
  File "C:\Program Files\ChimeraX-Apr-29-2025\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: _win32sysloader, win32api, win32com.shell.shell, chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_windows, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, PIL._imaging, PIL._imagingmath, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, zmq.backend.cython._zmq, tornado.speedups, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, PyQt6.QtSvg, _pydevd_bundle.pydevd_cython (total: 50)
===== Log before crash start =====
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.10.dev202504290649 (2025-04-29)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui tool show Shell

0.01s - Debugger warning: It seems that frozen modules are being used, which
may  
0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off  
0.00s - to python to disable frozen modules.  
0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to
disable this validation.  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.10.dev202504290649 (2025-04-29)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 560.94
OpenGL renderer: NVIDIA GeForce RTX 4070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: Gigabyte Technology Co., Ltd.
Model: To be filled by O.E.M.
OS: Microsoft Windows 10 Home (Build 19045)
Memory: 66,135,482,368
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-6700K CPU @ 4.00GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.3.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.1
    build: 1.2.2.post1
    certifi: 2025.4.26
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.1
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.3
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.5
    ChimeraX-AtomicLibrary: 14.1.17
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.2.6
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.dev202504290649
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.9
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.8.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.57.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.6
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.14
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 2.1.3
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.7
    plotly: 5.24.1
    pluggy: 1.5.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pyKVFinder: 0.7.1
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.3.5
    pytest-cov: 6.1.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tenacity: 9.0.0
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    toml: 0.10.2
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.13.2
    tzdata: 2025.2
    urllib3: 2.4.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

Change History (2)

comment:1 by pett, 6 months ago

Cc: Tom Goddard added
Component: Unassigned → Platform
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Test crash

comment:2 by pett, 6 months ago

Resolution: → not a bug
Status: accepted → closed

Crashed via os.abort() with no preceding activity -- looks fine.

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