![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 months ago
Closed 7 months ago
#17478 closed defect (duplicate)
Crash moving window between screens
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-15.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Thread 0x0000000394203000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001f7cec240 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group (total: 62)
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"procRole" : "Foreground",
"version" : 2,
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"incident" : "1E5DBC98-7331-4EDE-BA32-ACA8EDCF5F1A",
"pid" : 73600,
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"procLaunch" : "2025-04-23 13:27:40.3628 -0400",
"procStartAbsTime" : 10680048232420,
"procExitAbsTime" : 11407758692025,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "8EC77BFC-F7B7-26D3-FAB4-4101B073C7E2",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
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"wakeTime" : 16563,
"sleepWakeUUID" : "B7925397-9853-4049-B7EF-EFFC516219C5",
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"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4376002560\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 104d48000-104d4c000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":73600},
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===== Log before crash start =====
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/F4.cxs
Opened P5_J1190_Final_sharp.mrc as #1, grid size 360,360,360, pixel 0.825,
shown at level 0.08, step 1, values float32
Opened P5_J1190_Final_sharp.mrc copy as #4, grid size 360,360,360, pixel
0.825, shown at level 0.14, step 1, values float32
Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at level 0.08, step 1, values float32
Log from Mon Apr 21 22:27:24 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/sdk/Documents/Sm_Paper/Structures_Maps/SM_HEME_KCN/maps/P5_J1190_Final_sharp.mrc
Opened P5_J1190_Final_sharp.mrc as #1, grid size 360,360,360, pixel 0.825,
shown at level 0.0413, step 2, values float32
> open /Users/sdk/Documents/Sm_Paper/Structures_Maps/SM_HEME_KCN/Original-
> Refinement/RealSpaceRefine_61/Sm_KCN_Ref56_No-HEME-
> coot-3_real_space_refined_061.pdb
Chain information for Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb
#2
---
Chain | Description
A B C D | No description available
> volume #1 level 0.09
> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/preset.cxc
> set bgColor white
> lighting soft
> graphics silhouettes true width 2.5
> camera ortho
executed preset.cxc
> surface dust #1 size 8.25
> volume #1 step 1
> volume #1 level 0.08
> color #2: start-320 cornflower blue
> color #2: 321-532 plum
> color #2: 533-end pink
> color #2: 310-320 orange red
> ui tool show "Color Zone"
> color zone #1 near #2 distance 4.95
> color zone #1 near #2 distance 4.5
> color zone #1 near #2 distance 4.82
> color zone #1 near #2 distance 4
[Repeated 1 time(s)]
> hide #!1 models
> turn x -90
> undo
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> ui tool show "Side View"
> turn x -90
> show #!1 models
> hide #2 models
> show #2 models
> hide #!1 models
> show #!1 models
> turn x 90
> hide #!1 models
> show #!1 models
> ui tool show "Scale Bar"
> scalebar 50
> turn x -90
> turn x 90
> volume copy #1
Opened P5_J1190_Final_sharp.mrc copy as #4, grid size 360,360,360, pixel
0.825, shown at step 1, values float32
> surface dust #4 size 8.25
> ui tool show "Color Zone"
> color zone #4 near #2 distance 4.95
> turn x -90
> volume #4 level 0.1105
> color zone #4 near #2 distance 2
[Repeated 1 time(s)]
> transparency #4 50
> color zone #4 near #2 distance 2.5
> transparency #4 50
> transparency #4 20
> transparency #4 80
> volume #4 level 0.1218
> color zone #4 near #2 distance 2.5
> transparency #4 80
> transparency #4 50
> turn x 90
> turn x -90
> turn x 90
> turn x -90
> hide #!4 models
> show #!1 models
> hide #!1 models
> show #!4 models
> hide #!4 models
> show #!4 models
> volume copy #1
Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at step 1, values float32
> surface dust #4 size 8.25
> surface dust #5 size 8.25
> ui mousemode right "map eraser"
Can only have one displayed volume when erasing
[Repeated 1 time(s)]
> hide #!3 models
> show #!3 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
Can only have one displayed volume when erasing
> close #6
> close #5
> volume copy #1
Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at step 1, values float32
> surface dust #4 size 8.25
> surface dust #5 size 8.25
> ui mousemode right "map eraser"
[Repeated 2 time(s)]
Can only have one displayed volume when erasing
[Repeated 2 time(s)]
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> close #6
> show #!1 models
> hide #!1 models
> hide #!4 models
> turn x -90
> show #!5 models
> hide #2 models
> ui mousemode right "map eraser"
> volume erase #5 center 165.92,115.63,151.33 radius 17.52 outside true
[Repeated 1 time(s)]
> close #6
> close #5
> show #!4 models
> volume copy #1
Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at step 1, values float32
> surface dust #4 size 8.25
> surface dust #5 size 8.25
> hide #!4 models
> ui mousemode right "map eraser"
> volume erase #5 center 181.35,131.89,146.11 radius 10.098 outside true
> volume erase #5 center 177.62,131.63,132.22 radius 10.098
> volume erase #5 center 177.05,121.82,132.84 radius 10.098
> volume erase #5 center 186.62,130.65,155.87 radius 10.098
> hide #6 models
> show #!4 models
> show #2 models
> hide #!4 models
> hide #2 models
> show #6 models
> volume erase #5 center 179.55,145.8,148.52 radius 10.098
> hide #6 models
> show #!3 models
> hide #!3 models
> show #!4 models
> show #2 models
> hide #!4 models
> show #6 models
> hide #2 models
> volume erase #5 center 174,137.89,152.9 radius 10.098
> hide #6 models
> show #2 models
> show #!1 models
> hide #2 models
> show #2 models
> hide #2 models
> hide #!1 models
> show #2 models
> show #!1 models
> hide #!5 models
> show #!5 models
> hide #2 models
> show #2 models
> hide #2 models
> turn x -90
> show #2 models
> hide #!1 models
> show #!1 models
> turn x 90
> turn x -90
> hide #!1 models
> show #!1 models
> show #!3 models
> hide #2 models
> save /Users/sdk/Desktop/image1.png supersample 3
> turn x 90
> turn x -90
> turn x -60
> turn x 60
> turn x -90
> show #2 models
> hide #!1 models
> show #!1 models
> turn x 90
> turn x -45
> hide #!1 models
> show #!4 models
> hide #!5 models
> transparency #4 20
> transparency #4 80
> show #!5 models
> transparency #4 50
> show #!1 models
> hide #!4 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> turn x -45
> undo
> turn x -45
> turn x -90
> turn x 90
> turn x -90
> turn x 90
> turn x -45
> turn x 45
> turn x -60
> turn x 60
> hide #2 models
> turn x -90
> turn x 90
> save /Users/sdk/Desktop/image1.png supersample 3
> show #2 models
> hide #!1 models
> show #!1 models
> hide #2 models
> show #2 models
> hide #!1 models
> save /Users/sdk/Desktop/image2.png supersample 3
> show #!1 models
> hide #2 models
> turn x -60
> save /Users/sdk/Desktop/image3.png supersample 3
> show #2 models
> hide #!1 models
> hide #!5 models
> ui tool show "Side View"
> hide #!3 models
> save /Users/sdk/Desktop/image4.png supersample 3
> turn x 60
> save /Users/sdk/Desktop/image5.png supersample 3
> show #!5 models
> hide #!5 models
> show #!4 models
> show #!5 models
> hide #!5 models
> show #!5 models
> turn x -60
> transparency #4 50
> transparency #4 90
> transparency #4 70
> ui tool show "Volume Viewer"
> volume #4 level 0.1432
> volume #4 level 0.1405
> ui tool show "Color Zone"
> color zone #4 near #2 distance 4.95
> color zone #4 near #2 distance 3
[Repeated 1 time(s)]
> transparency #4 70
> save /Users/sdk/Desktop/image6.png supersample 3
> save /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/F4.cxs
——— End of log from Mon Apr 21 22:27:24 2025 ———
opened ChimeraX session
> save /Users/sdk/Desktop/image1.png supersample 3
> show #!1 models
> hide #!1 models
> hide #2 models
> show #2 models
> hide #!4 models
> select #2:310-end
10608 atoms, 10724 bonds, 1368 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> turn x -90
> turn x 90
> hide sel cartoons
> show sel cartoons
> combine #1
No structures specified
> combine #2
> hide #2 models
> show #!4 models
> show #!3 models
> hide #!3 models
> show #2 models
> hide #2 models
> show #!1 models
> hide #!1 models
> open
> /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/Local_res/cryosparc_P5_J1437_map_locres.mrc
Opened cryosparc_P5_J1437_map_locres.mrc as #7, grid size 360,360,360, pixel
0.825, shown at level 8.21, step 2, values float32
> volume #5 level 0.05225
> volume #7 level 9.719
> hide #!7 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!4 models
> show #!4 models
> ui tool show "Surface Color"
> color sample #4.1 map #7 palette 3,#0000ff:4,#ffffff:5,#ff0000
Map values for surface "surface": minimum 3.123, mean 3.833, maximum 6.173
> volume #4 level 0.1214
> color sample #4.1 map #7 palette 3,#0000ff:4,#00fdff:5,#00f900
Map values for surface "surface": minimum 3.123, mean 3.938, maximum 7.734
> volume #4 level 0.08
> volume #4 level 0.15
> hide #!4 models
> show #!4 models
> hide #6 models
> show #6 models
> hide #6 models
> volume #4 level 0.1404
> show #2 models
> turn x -90
> hide #!4 models
> select clear
> turn x -90
> show #!4 models
> hide #!4 models
> turn x -90
> turn x 90
> show #!4 models
> turn x -60
> volume #4 level 0.12
> volume #4 level 0.13
> volume #4 level 0.14
> hide #2 models
> show #2 models
> color sample #4.1 map #7 palette 3,#0000ff:4,#00fdff:5,#00f900:6,#ff9300
Map values for surface "surface": minimum 3.123, mean 3.836, maximum 6.177
> key blue:3 #00fdff:4 #00f900:5 #ff9300:6 showTool true
> ui mousemode right "color key"
> key pos 0.708614,0.00174751
> key pos 0.855758,0.0425812 size 0.0894139,0.0387718
> key pos 0.870275,0.030531 size 0.110874,0.0372471
> key pos 0.897523,0.0505824 size 0.0943139,0.0412757
> key pos 0.881038,0.0455542 size 0.102553,0.0455593
> save /Users/sdk/Desktop/image2.png supersample 3
> hide #!4 models
> turn x -90
> turn x 90
> turn x -60
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #2 models
> show #2 models
> show #!1 models
> hide #!4 models
> volume #4 level 0.08974
> volume #1 level 0.05846
> volume #1 level 0.06
> volume #1 level 0.08
> volume #1 level 0.07
> hide #!1 models
> volume #4 level 0.1
> hide #2 models
> show #!7 models
> volume #7 step 1
> volume #7 level 7.69
> volume #7 level 8.737
> volume #7 level 6.446
> key pos 0.796201,0.175016
> ui tool show "Side View"
> show #2 models
> hide #!4 models
> hide #8 models
> select #2/A:321-end #2/D:321-end
5158 atoms, 5216 bonds, 662 residues, 1 model selected
> select ~sel & ##selected
9958 atoms, 10100 bonds, 1258 residues, 1 model selected
> hide sel cartoons
> ui tool show "Side View"
> turn y 180
> undo
> turn z 180
> undo
> turn x 180
> save /Users/sdk/Desktop/image3.png supersample 3
> show sel cartoons
> key pos 0.602484,0.742585 size 0.00601067,0.0363036
> hide sel atoms
> select #2/B:321-end #2/C:321-end
5158 atoms, 5216 bonds, 662 residues, 1 model selected
> select ~sel & ##selected
9958 atoms, 10100 bonds, 1258 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> turn x -90
> turn x 90
> turn y 45
> undo
> turn y -45
> hide sel cartoons
> undo
> turn y 45
> turn y -30
> turn x -30
> undo
> turn y 45
> turn x -90
> turn y -45
> hide sel cartoons
> turn y 45
> turn y 90
> turn y -90
> turn z -90
> turn z 90
> turn z -90
> turn z -45
> show sel cartoons
> turn x -90
> turn x 90
> turn x -60
> turn y -60
> hide sel cartoons
> turn y 60
> show sel cartoons
> turn y 90
> hide sel cartoons
> undo
> turn x 60
> turn y 90
> hide sel cartoons
> show sel cartoons
> turn y -90
> undo
> turn x -90
> turn x 90
> turn y 90
> turn x -45
> hide sel cartoons
> show sel cartoons
> turn x -5
> turn x -90
> turn x 90
> turn y 90
> hide sel cartoons
> show sel cartoons
> turn x -90
> undo
> turn y 60
> turn x -90
> turn x 30
> hide sel atoms
> hide sel cartoons
> select ~sel & ##selected
5158 atoms, 5216 bonds, 662 residues, 1 model selected
> save /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
> CN_DHH_rotated.pdb models #2 selectedOnly true relModel #1
> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
> CN_DHH_rotated.pdb
Summary of feedback from opening
/Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
CN_DHH_rotated.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 184 ILE A 188 1 5
Start residue of secondary structure not found: HELIX 2 2 ASP A 193 SER A 213
1 21
Start residue of secondary structure not found: HELIX 3 3 TYR A 232 GLN A 240
1 9
Start residue of secondary structure not found: HELIX 4 4 GLU A 244 GLU A 255
1 12
Start residue of secondary structure not found: HELIX 5 5 HIS A 273 VAL A 289
1 17
89 messages similar to the above omitted
Chain information for HEME-CN_DHH_rotated.pdb #9
---
Chain | Description
B C | No description available
> select ~sel & ##selected
9958 atoms, 10100 bonds, 1258 residues, 1 model selected
> show sel cartoons
> close #9
> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
> CN_DHH_rotated.pdb
Summary of feedback from opening
/Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
CN_DHH_rotated.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 184 ILE A 188 1 5
Start residue of secondary structure not found: HELIX 2 2 ASP A 193 SER A 213
1 21
Start residue of secondary structure not found: HELIX 3 3 TYR A 232 GLN A 240
1 9
Start residue of secondary structure not found: HELIX 4 4 GLU A 244 GLU A 255
1 12
Start residue of secondary structure not found: HELIX 5 5 HIS A 273 VAL A 289
1 17
89 messages similar to the above omitted
Chain information for HEME-CN_DHH_rotated.pdb #9
---
Chain | Description
B C | No description available
> close #9
> hide sel cartoons
> ui mousemode right rotate
> ui mousemode right select
> show sel cartoons
> select clear
> turn x -90
> turn x 90
> select #2/B:321-end #2/C:321-end
5158 atoms, 5216 bonds, 662 residues, 1 model selected
> select ~sel & ##selected
9958 atoms, 10100 bonds, 1258 residues, 1 model selected
> turn x 30
> undo
> turn x -90
> turn x 90
> turn x -30
> turn y 60
> undo
> turn y -30
> undo
> turn y 90
> undo
> tunr y -60
Unknown command: tunr y -60
> turn y -60
> undo
> turn y -60
> hide sel cartoons
> show sel cartoons
> undo
> turn y 30
> undo
> turn y 45
> undo
> turn y -45
> turn x -30
> undo
> turn z -30
> undo
> turn x 30
> turn x -90
> turn x 90
> select clear
> turn x 90
> turn y 90
> turn x -90
> turn x 90
> turn z 90
> undo
> turn x -90
> turn x 90
> turn y -90
> select #2/B:321-end #2/C:321-end
5158 atoms, 5216 bonds, 662 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select ~sel & ##selected
9958 atoms, 10100 bonds, 1258 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> turn z 45
> hide sel cartoons
> show sel cartoons
> turn z -90
> hide sel cartoons
> turn z 90
> show sel cartoons
> turn x -90
> turn x 90
> turn y -90
> hide sel cartoons
> turn x 30
> turn x 15
> turn x -45
> show sel cartoons
> hide sel cartoons
> turn x -30
> undo
> turn x 30
> turn y 30
> turn z 30
> undo
> turn z -30
> undo
> turn z 15
> undo
> turn z -15
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> turn z 15
> turn y 60
> turn y 30
> undo
> turn z 30
> turn x -90
> undo
> turn z 30
> undo
> turn z -30
> turn y 60
> undo
> turn x 30
> undo
> turn x 030
> undo
> turn x 30
> undo
> turn x -30
> hide sel cartoons
> show sel cartoons
> turn x -90
> turn x 90
> turn y 60
> undo
> turn y -60
> turn z 45
> undo
> turn z -45
> undo
> turn x -30
> undo
> turn x -30
> undo
> turn x 30
> hide sel cartoons
> show sel cartoons
> select clear
> select #2/B:321-end #2/C:321-end
5158 atoms, 5216 bonds, 662 residues, 1 model selected
> select ~sel & ##selected
9958 atoms, 10100 bonds, 1258 residues, 1 model selected
> turn x -90
> turn x 90
> select clear
> select #2:310-end
10608 atoms, 10724 bonds, 1368 residues, 1 model selected
> hide sel cartoons
> color #2/A light salmon
> color #2/B light salmon
> select #2/A:start-310
1131 atoms, 1151 bonds, 139 residues, 1 model selected
> ui tool show Contacts
> contacts sel ignoreHiddenModels true
885 contacts
> ui tool show Contacts
> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true
127 contacts
> ui tool show Contacts
> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
127 contacts
atom1 atom2 overlap distance
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 182 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 OG1 0.266 3.074
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 ND1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2 0.259 3.141
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1 0.213 3.427
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 ND2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ALA 326 CB 0.203 3.317
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB 0.202 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 NE2 0.190 3.330
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CE2 0.186 3.454
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB 0.185 3.575
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2 0.170 3.350
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB 0.162 3.598
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA 0.149 3.491
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CE2 0.132 3.388
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CE1 0.126 3.514
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB 0.119 3.401
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CB 0.118 3.642
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB 0.113 3.647
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CG 0.112 3.188
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 C Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB 0.111 3.379
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE1 0.106 3.534
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 176 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CD2 0.089 3.551
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB 0.083 3.557
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA 0.076 3.564
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2 0.076 3.564
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 325 CD 0.065 3.235
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB 0.064 3.456
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 231 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CE1 0.061 3.339
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2 0.057 3.463
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA 0.056 3.704
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B GLY 277 CA 0.050 3.590
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 ND1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2 0.029 3.371
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ALA 326 CB 0.024 3.466
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA 0.021 3.499
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 OH Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CD 0.009 3.331
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 O 0.009 3.291
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CZ 0.008 3.632
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 CA 0.008 3.292
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 NH2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B VAL 221 CG1 0.008 3.512
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O 0.005 3.295
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB -0.001 3.761
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 ND1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA -0.014 3.534
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 C -0.025 3.395
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 186 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 323 NH2 -0.035 3.555
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CA -0.037 3.797
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB -0.042 3.682
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 C -0.043 3.293
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ASP 231 N -0.046 3.326
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 C -0.048 3.538
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 323 CA -0.056 3.356
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB -0.066 3.366
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CG -0.067 3.707
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B SER 274 CA -0.067 3.827
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA -0.068 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD1 -0.078 3.718
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CG -0.083 3.573
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB -0.085 3.725
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CD -0.088 3.578
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 OH Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NE -0.091 2.791
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 NE Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CZ -0.092 3.342
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1 -0.094 3.734
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B GLY 277 CA -0.099 3.739
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA -0.101 3.591
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 C -0.102 3.132
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 C Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CE1 -0.102 3.472
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 C Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 NE2 -0.126 3.376
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2 -0.133 3.653
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG -0.137 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 O -0.144 2.984
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NE -0.157 3.407
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD1 -0.167 3.687
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ALA 326 CB -0.175 3.475
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2 -0.177 3.697
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2 -0.182 3.582
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 O -0.182 3.482
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B SER 274 N -0.186 3.706
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD1 -0.187 3.557
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB -0.192 3.492
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CG -0.194 3.564
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 NE Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 OH -0.207 2.907
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 221 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NH2 -0.208 3.728
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 OG1 -0.209 2.689
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CD2 -0.213 3.733
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 C Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2 -0.222 3.592
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.224 3.524
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 288 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB -0.240 3.540
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 294 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 311 CA -0.241 4.001
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CA -0.242 4.002
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1 -0.250 3.550
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CD2 -0.257 3.897
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1 -0.259 3.899
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2 -0.262 3.902
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CG -0.262 3.902
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N -0.267 3.787
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D PHE 477 CZ -0.269 3.909
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CG -0.285 3.805
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB -0.297 3.597
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CZ -0.298 3.788
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 N -0.299 3.819
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 ND1 -0.304 3.824
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB -0.306 3.826
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B SER 274 CA -0.308 4.068
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 293 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 311 CA -0.308 3.608
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.317 4.077
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB -0.318 3.958
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1 -0.321 3.811
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CA -0.322 3.842
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 277 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CE1 -0.322 3.962
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CD -0.334 3.634
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 221 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B VAL 221 CG2 -0.339 4.099
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ASP 231 CB -0.341 3.861
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 NE2 -0.342 3.622
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CG -0.346 4.106
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 293 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 325 CD -0.347 4.107
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CB -0.349 3.869
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2 -0.351 3.531
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CG -0.352 3.572
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2 -0.362 4.002
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 176 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CE2 -0.372 4.012
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 O -0.376 3.556
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB -0.378 4.138
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CG -0.379 3.869
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NE -0.381 3.781
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 294 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 311 N -0.381 3.901
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PRO 174 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2 -0.383 4.023
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 176 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2 -0.385 4.025
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 OG1 -0.387 3.457
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CD -0.389 4.029
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CD Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CE2 -0.395 4.035
127 contacts
> select #2/A:190-210
159 atoms, 161 bonds, 21 residues, 1 model selected
> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
65 contacts
atom1 atom2 overlap distance
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB 0.202 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2 0.170 3.350
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB 0.162 3.598
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1 0.123 3.637
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.120 3.520
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.108 3.532
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 0.081 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O 0.066 3.234
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA 0.056 3.704
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1 0.053 3.707
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE 0.047 3.353
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.040 3.260
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD 0.013 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 0.012 3.628
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.007 3.633
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O 0.005 3.295
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.006 3.646
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.026 3.666
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG -0.029 3.329
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1 -0.044 3.684
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA -0.068 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1 -0.070 3.250
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB -0.086 3.846
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB -0.123 3.423
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.128 3.508
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.129 3.769
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG -0.137 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB -0.139 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB -0.151 3.451
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N -0.158 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH -0.166 3.506
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.178 3.938
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2 -0.181 3.821
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2 -0.191 3.831
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2 -0.211 3.851
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.216 2.876
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.218 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.220 3.740
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.221 3.861
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N -0.222 2.882
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.224 3.524
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.234 3.874
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1 -0.235 3.875
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE -0.243 3.643
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1 -0.250 3.550
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD -0.251 3.891
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG -0.253 3.893
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2 -0.261 3.901
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N -0.267 3.787
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N -0.275 2.935
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.286 3.656
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.292 3.932
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB -0.297 3.597
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ -0.299 3.939
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.317 4.077
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.328 3.728
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ -0.333 3.703
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH -0.335 2.815
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2 -0.337 3.977
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1 -0.352 4.112
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.364 3.854
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG -0.372 2.852
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.381 4.021
65 contacts
> select #2/A:190-210 #2/C:190-210
318 atoms, 322 bonds, 12 pseudobonds, 42 residues, 2 models selected
> contacts sel setAttrs true restrict both ignoreHiddenModels true reveal true
> log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
143 contacts
atom1 atom2 overlap distance
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB 0.202 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB 0.170 3.350
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB 0.162 3.598
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB 0.145 3.615
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O 0.137 3.163
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CD1 0.128 3.632
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 192 O 0.120 3.180
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O 0.120 3.180
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 O 0.117 3.183
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O 0.115 3.185
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O 0.109 3.191
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1 0.105 3.655
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 O 0.098 3.202
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD1 0.082 3.678
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 OD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1 0.081 3.219
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O 0.081 3.219
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 O 0.066 3.234
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB 0.056 3.704
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 O 0.046 3.254
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 ND2 0.030 3.490
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 OD2 0.025 3.275
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB 0.005 3.295
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 O 0.004 3.296
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1 0.001 3.759
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O -0.008 3.308
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 O -0.011 3.311
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O -0.015 3.315
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB -0.019 3.779
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 ND2 -0.023 3.543
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB -0.024 3.324
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CB -0.039 3.799
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 O -0.045 3.345
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 O -0.063 3.363
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA -0.068 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 O -0.127 3.427
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O -0.130 3.430
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O -0.135 3.435
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB -0.137 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 N -0.137 3.537
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 O -0.139 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 O -0.148 3.448
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 O -0.151 3.451
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB -0.170 3.470
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 O -0.176 3.476
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB -0.178 3.478
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 OD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD2 -0.180 3.480
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O -0.192 3.492
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O -0.196 3.496
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.196 3.496
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 O -0.200 2.860
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 O -0.200 2.860
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 O -0.201 2.861
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 O -0.203 2.863
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CG -0.205 3.965
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O -0.209 2.869
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 O -0.217 2.877
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N -0.219 2.879
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 O -0.223 2.883
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O -0.224 3.524
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CB -0.227 3.527
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O -0.230 2.890
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CB -0.230 3.530
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CD1 -0.231 3.531
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O -0.231 2.891
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O -0.232 2.892
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CB -0.235 3.535
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O -0.236 2.896
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O -0.239 2.899
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O -0.244 2.904
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 N -0.245 3.645
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB -0.250 3.550
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 O -0.251 3.551
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O -0.255 2.915
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 O -0.257 2.917
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 192 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 OD2 -0.258 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 O -0.258 2.918
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 O -0.259 3.559
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O -0.261 3.291
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 O -0.263 2.923
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 O -0.265 2.925
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O -0.266 2.926
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.267 3.567
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O -0.267 2.927
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB -0.267 3.787
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 O -0.269 2.929
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 O -0.270 2.930
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CB -0.271 3.571
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O -0.281 3.581
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CB -0.289 4.049
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 O -0.290 2.950
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 O -0.290 2.950
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O -0.292 3.592
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O -0.293 2.953
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O -0.293 3.593
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O -0.294 2.954
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 O -0.295 3.595
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O -0.296 3.596
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1 -0.297 3.597
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB -0.297 4.057
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CB -0.298 3.598
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 O -0.300 3.600
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 O -0.301 3.601
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O -0.303 3.603
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 ND2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O -0.303 2.963
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O -0.304 3.604
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O -0.305 3.605
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O -0.309 3.609
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O -0.315 3.615
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.317 4.077
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 N -0.320 3.720
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O -0.325 3.625
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O -0.325 3.625
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O -0.328 3.628
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 O -0.328 2.988
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 O -0.329 3.629
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 N -0.331 3.731
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 O -0.331 2.991
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O -0.331 3.361
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O -0.338 3.638
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 O -0.338 3.638
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB -0.342 4.102
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 ND2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O -0.344 3.004
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O -0.344 3.644
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O -0.348 3.648
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 O -0.348 3.648
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O -0.349 3.649
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CB -0.350 3.650
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CB -0.361 3.661
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 O -0.364 3.664
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CB -0.367 3.667
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 O -0.369 3.669
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD2 -0.369 4.129
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O -0.370 3.670
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB -0.370 4.130
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 O -0.372 3.672
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O -0.374 3.674
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O -0.374 3.674
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA -0.375 3.675
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CB -0.378 3.678
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O -0.384 3.684
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 N Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1 -0.389 3.909
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 CB -0.394 3.694
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 O -0.397 3.697
143 contacts
Restriction atom specifier must not be blank
> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
112 contacts
atom1 atom2 overlap distance
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 CG 0.144 3.156
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CB 0.143 3.497
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1 0.123 3.637
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.120 3.520
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2 0.119 3.401
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.108 3.532
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CD1 0.089 3.431
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 181 CD1 0.085 3.675
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 0.081 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O 0.066 3.234
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 252 OE1 0.054 3.126
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1 0.053 3.707
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CB 0.047 3.593
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE 0.047 3.353
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 CG 0.047 3.593
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 OH 0.044 3.296
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.040 3.260
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 NE 0.029 3.371
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 188 CB 0.022 3.738
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD 0.013 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 0.012 3.628
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.007 3.633
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 245 CG2 0.001 3.639
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 258 CD1 -0.002 3.762
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.006 3.646
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.026 3.666
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG -0.029 3.329
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1 -0.044 3.684
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 212 CG -0.046 3.346
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 245 CG2 -0.047 3.687
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 238 CD1 -0.059 3.699
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C MET 223 SD -0.067 3.447
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1 -0.070 3.250
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 NE -0.071 3.471
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB -0.086 3.846
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C MET 223 SD -0.092 3.282
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CD -0.101 3.741
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 226 CD2 -0.110 3.750
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 212 CB -0.115 3.415
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB -0.123 3.423
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.128 3.508
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CA -0.128 3.768
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.129 3.769
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB -0.139 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 252 CB -0.144 3.784
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 238 CD2 -0.146 3.786
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB -0.151 3.451
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 211 CB -0.152 3.452
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 260 CD1 -0.157 3.917
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N -0.158 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH -0.166 3.506
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 260 CD1 -0.170 3.930
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.178 3.938
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2 -0.181 3.821
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CD1 -0.191 3.711
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2 -0.191 3.831
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 CE2 -0.191 3.831
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 CB -0.206 3.506
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2 -0.211 3.851
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 211 N -0.213 2.873
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.216 2.876
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.218 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.220 3.740
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.221 3.861
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N -0.222 2.882
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 212 N -0.222 2.882
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 245 CG2 -0.226 3.866
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.234 3.874
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1 -0.235 3.875
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE -0.243 3.643
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD -0.251 3.891
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG -0.253 3.893
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2 -0.261 3.901
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 CG -0.263 3.903
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 211 N -0.273 3.673
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 181 CG1 -0.274 4.034
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N -0.275 2.935
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 N -0.275 3.675
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 226 CE1 -0.275 3.915
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 188 CD1 -0.278 4.038
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 N -0.282 2.942
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2 -0.285 3.805
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.286 3.656
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 NE -0.286 3.686
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.292 3.932
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 184 OH -0.298 3.368
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ -0.299 3.939
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 CD2 -0.303 3.943
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 184 CE1 -0.308 3.488
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CD -0.312 3.952
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 188 CB -0.312 4.072
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 184 OH -0.315 2.795
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 OG -0.315 2.795
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CZ -0.325 3.695
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.328 3.728
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ -0.333 3.703
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 NE -0.334 3.734
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH -0.335 2.815
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2 -0.337 3.977
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 NH1 -0.343 3.863
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 258 CD1 -0.350 4.110
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1 -0.352 4.112
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 OH -0.358 3.698
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C THR 187 O -0.363 3.663
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.364 3.854
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 252 CB -0.364 4.004
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG -0.372 2.852
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.381 4.021
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 CB -0.392 3.692
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CD -0.399 3.889
112 contacts
> select #2/A:190-210
159 atoms, 161 bonds, 66 pseudobonds, 21 residues, 2 models selected
> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
65 contacts
atom1 atom2 overlap distance
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB 0.202 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2 0.170 3.350
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB 0.162 3.598
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1 0.123 3.637
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.120 3.520
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.108 3.532
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 0.081 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O 0.066 3.234
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA 0.056 3.704
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1 0.053 3.707
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE 0.047 3.353
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.040 3.260
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD 0.013 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 0.012 3.628
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.007 3.633
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O 0.005 3.295
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.006 3.646
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.026 3.666
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG -0.029 3.329
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1 -0.044 3.684
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA -0.068 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1 -0.070 3.250
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB -0.086 3.846
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB -0.123 3.423
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.128 3.508
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.129 3.769
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG -0.137 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB -0.139 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB -0.151 3.451
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N -0.158 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH -0.166 3.506
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.178 3.938
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2 -0.181 3.821
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2 -0.191 3.831
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2 -0.211 3.851
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.216 2.876
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.218 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.220 3.740
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.221 3.861
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N -0.222 2.882
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.224 3.524
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.234 3.874
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1 -0.235 3.875
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE -0.243 3.643
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1 -0.250 3.550
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD -0.251 3.891
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG -0.253 3.893
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2 -0.261 3.901
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N -0.267 3.787
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N -0.275 2.935
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.286 3.656
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.292 3.932
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB -0.297 3.597
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ -0.299 3.939
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.317 4.077
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.328 3.728
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ -0.333 3.703
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH -0.335 2.815
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2 -0.337 3.977
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1 -0.352 4.112
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.364 3.854
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG -0.372 2.852
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.381 4.021
65 contacts
> hide #9 models
> show #9 models
> close #9
> close #8
> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
65 contacts
atom1 atom2 overlap distance
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB 0.202 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2 0.170 3.350
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB 0.162 3.598
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1 0.123 3.637
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.120 3.520
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB 0.108 3.532
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 0.081 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O 0.066 3.234
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA 0.056 3.704
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1 0.053 3.707
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE 0.047 3.353
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.040 3.260
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD 0.013 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 0.012 3.628
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG 0.007 3.633
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O 0.005 3.295
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.006 3.646
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.026 3.666
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG -0.029 3.329
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1 -0.044 3.684
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA -0.068 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1 -0.070 3.250
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB -0.086 3.846
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB -0.123 3.423
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.128 3.508
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.129 3.769
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG -0.137 3.627
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB -0.139 3.439
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB -0.151 3.451
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N -0.158 3.558
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH -0.166 3.506
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.178 3.938
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2 -0.181 3.821
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2 -0.191 3.831
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2 -0.211 3.851
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.216 2.876
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD -0.218 3.408
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.220 3.740
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA -0.221 3.861
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N -0.222 2.882
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.224 3.524
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.234 3.874
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1 -0.235 3.875
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE -0.243 3.643
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1 -0.250 3.550
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD -0.251 3.891
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG -0.253 3.893
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2 -0.261 3.901
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N -0.267 3.787
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N -0.275 2.935
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1 -0.286 3.656
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2 -0.292 3.932
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB -0.297 3.597
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ -0.299 3.939
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB -0.317 4.077
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N -0.328 3.728
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1 -0.333 4.093
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ -0.333 3.703
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH -0.335 2.815
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2 -0.337 3.977
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1 -0.352 4.112
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD -0.364 3.854
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG -0.372 2.852
Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1 Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB -0.381 4.021
65 contacts
> contacts ignoreHiddenModels true makePseudobonds false
11698 contacts
> contacts ignoreHiddenModels true
11698 contacts
> contacts sel restrict cross ignoreHiddenModels true
65 contacts
> hide sel atoms
> select clear
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #!2 models
> show #!2 models
> select add #2
15116 atoms, 15316 bonds, 66 pseudobonds, 1920 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> select clear
> select #2:310-end
10608 atoms, 10724 bonds, 1368 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> hide #8 models
> show #8 models
> close #8
> select #2/A:190-210
159 atoms, 161 bonds, 21 residues, 1 model selected
> ui tool show H-Bonds
> hbonds sel restrict cross interModel false intraMol false intraRes false
> reveal true
1 hydrogen bonds found
> hbonds sel restrict cross intraMol false intraRes false reveal true
42 hydrogen bonds found
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/sdk/Documents/Sm_Paper/Structures_Maps/SM_HEME_KCN/Original-
> Refinement/RealSpaceRefine_61/Sm_KCN_Ref56_No-HEME-
> coot-3_real_space_refined_061.pdb
Chain information for Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb
#1
---
Chain | Description
A B C D | No description available
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M4
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac16,13
Model Number: MC6L4LL/A
Chip: Apple M4
Total Number of Cores: 10 (4 performance and 6 efficiency)
Memory: 24 GB
System Firmware Version: 11881.61.3
OS Loader Version: 11881.61.3
Software:
System Software Overview:
System Version: macOS 15.2 (24C2101)
Kernel Version: Darwin 24.2.0
Time since boot: 18 days, 17 hours, 16 minutes
Graphics/Displays:
Apple M4:
Chipset Model: Apple M4
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2880 x 1864 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
ASUS VN247:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 7 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between screens |
comment:2 by , 7 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
The ChimeraX bug report panel explained what we know about this crash:
"This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX."
The ChimeraX daily build is using a newer version of Qt (6.8.2) that has not exhibited these multi-display Mac crashes so you may want to try that.
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Reported by Sadik