Crash using open dialog

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10rc202505080035 (2025-05-08 00:35:30 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x800706ba

Thread 0x00006ecc (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006634 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00004a38 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\connection.py", line 878 in wait
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00000d30 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00003a78 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000702c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00004824 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002604 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000064fc (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000424c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006770 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006380 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
Windows fatal exception: code 0x  File "800706baC:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py"

, line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006ef8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000067d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00000ab4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006638 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001968 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000339c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000047c4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 1252 in _browse_parse
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 1395 in parse
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 2782 in _parse_arg
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 2928 in _process_positional_arguments
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 3172 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\run.py", line 49 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\ui\gui.py", line 1224 in 
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x800706ba

Thread 0x00006ecc (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006634 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00004a38 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\connection.py", line 878 in wait
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00000d30 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00003a78 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000702c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00004824 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002604 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000064fc (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000424c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006770 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006380 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006ef8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000067d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00000ab4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006638 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001968 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000339c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000047c4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 1252 in _browse_parse
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 1395 in parse
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 2782 in _parse_arg
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 2928 in _process_positional_arguments
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 3172 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\commands\run.py", line 49 in run
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\ui\gui.py", line 1224 in 
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
  File "C:\Program Files\ChimeraX 1.10rc202505080035\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.10rc202505080035 (2025-05-08)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

> open "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/1a0j_deposited_chain_front_image-800x800.png"

Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF,
I, RGB)  

> open "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/chymotrypsin.png"

Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF,
I, RGB)  

> open "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/1A0J.cif"

Summary of feedback from opening C:/Users/ashwi/OneDrive - Karolinska
Institutet/Dokument/Bioinfo course/Assignment 5/1A0J.cif  
---  
notes | PDBx/mmCIF styling lost on line 3987. Rereading mmCIF file from the beginning.  
Fetching CCD BEN from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/N/BEN/BEN.cif  
Fetching CCD CA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/CA/CA.cif  
Fetching CCD SO4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif  
  
1A0J.cif title:  
Crystal structure of A non-psychrophilic trypsin from A cold-adapted fish
species. [more info...]  
  
Chain information for 1A0J.cif #1  
---  
Chain | Description | UniProt  
A B C D | TRYPSIN | TRY3_SALSA 16-245  
  
Non-standard residues in 1A0J.cif #1  
---  
BEN — benzamidine  
CA — calcium ion  
SO4 — sulfate ion  
  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select ~sel & ##selected

5446 atoms, 5176 bonds, 5 pseudobonds, 1063 residues, 2 models selected  

> hide (#!1 & sel) target a

> hide target m

> show target m

> ui tool show "Color Actions"

> ui tool show "Color Key"

> ui mousemode right "color key"

> ui tool show "Color Actions"

> hide sel atoms

> hide sel cartoons

> show sel cartoons

> ui tool show "Color Actions"

> color sel crimson target acspfl

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /B:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /B:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A

1798 atoms, 1717 bonds, 5 pseudobonds, 345 residues, 2 models selected  

> select ~sel

5308 atoms, 5159 bonds, 941 residues, 2 models selected  

> select ~sel & ##selected

1798 atoms, 1717 bonds, 5 pseudobonds, 345 residues, 2 models selected  

> hide (#!1 & sel) target a

> cartoon (#!1 & sel)

> ui tool show "Basic Actions"

> ui tool show "Render/Select by Attribute"

> cartoon (#!1 & sel)

> ui tool show Matchmaker

> ui tool show AlphaFold

> show sel atoms

> hide sel atoms

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> select /D

1790 atoms, 1725 bonds, 329 residues, 1 model selected  

> select /C

1757 atoms, 1717 bonds, 304 residues, 1 model selected  

> select /B

1761 atoms, 1717 bonds, 308 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel bychain

> color sel byelement

> color sel bychain

> ui tool show "Color Key"

> ui mousemode right "color key"

> style sel sphere

Changed 1761 atom styles  

> style sel ball

Changed 1761 atom styles  

> ui tool show "Selection Inspector"

> color sel red

> select helix

676 atoms, 680 bonds, 92 residues, 1 model selected  

> select strand

2176 atoms, 2178 bonds, 281 residues, 1 model selected  

> select /A

1798 atoms, 1717 bonds, 5 pseudobonds, 345 residues, 2 models selected  

> select helix

676 atoms, 680 bonds, 92 residues, 1 model selected  

> select down

676 atoms, 680 bonds, 92 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel bychain

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> rainbow sel

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 1A0J.cif_A SES surface #1.2: minimum, -16.62, mean 0.45,
maximum 10.38  
Coulombic values for 1A0J.cif_B SES surface #1.3: minimum, -11.34, mean 0.32,
maximum 11.35  
Coulombic values for 1A0J.cif_C SES surface #1.4: minimum, -15.55, mean 0.20,
maximum 10.05  
Coulombic values for 1A0J.cif_D SES surface #1.5: minimum, -19.70, mean 0.55,
maximum 11.08  
To also show corresponding color key, enter the above coulombic command and
add key true  

> coulombic sel

Coulombic values for 1A0J.cif_A SES surface #1.2: minimum, -16.62, mean 0.45,
maximum 10.38  
Coulombic values for 1A0J.cif_B SES surface #1.3: minimum, -11.34, mean 0.32,
maximum 11.35  
Coulombic values for 1A0J.cif_C SES surface #1.4: minimum, -15.55, mean 0.20,
maximum 10.05  
Coulombic values for 1A0J.cif_D SES surface #1.5: minimum, -19.70, mean 0.55,
maximum 11.08  
To also show corresponding color key, enter the above coulombic command and
add key true  

> hide sel surfaces

> hide sel atoms

> show sel atoms

> show sel cartoons

> hide sel cartoons

> style sel stick

Changed 676 atom styles  

> style sel sphere

Changed 676 atom styles  

> style sel ball

Changed 676 atom styles  

> lighting simple

> select /A/B/C/D

7106 atoms, 6876 bonds, 5 pseudobonds, 1286 residues, 2 models selected  

> show (#!1 & sel) target ab

> ui tool show "Color Actions"

> color sel bychain

> show sel atoms

> hide sel atoms

> show sel cartoons

> ui tool show "Color Actions"

> style sel stick

Changed 7106 atom styles  

> color sel bychain

> color sel byhetero

> color sel byelement

> color sel bynucleotide

> color sel bychain

> cd "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5"

Current working directory is: C:\Users\ashwi\OneDrive - Karolinska
Institutet\Dokument\Bioinfo course\Assignment 5  

> save "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/trypsin.cxs"


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.10rc202505080035 (2025-05-08)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\ashwi\\\OneDrive - Karolinska
> Institutet\\\Dokument\\\Bioinfo course\\\Assignment
> 5\\\others\\\trypsin.cxs"

Log from Sat May 10 05:16:57 2025 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.10rc202505080035 (2025-05-08)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

> open "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/1a0j_deposited_chain_front_image-800x800.png"

Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF,
I, RGB)  

> open "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/chymotrypsin.png"

Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF,
I, RGB)  

> open "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/1A0J.cif"

Summary of feedback from opening C:/Users/ashwi/OneDrive - Karolinska
Institutet/Dokument/Bioinfo course/Assignment 5/1A0J.cif  
---  
notes | PDBx/mmCIF styling lost on line 3987. Rereading mmCIF file from the beginning.  
Fetching CCD BEN from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/N/BEN/BEN.cif  
Fetching CCD CA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/CA/CA.cif  
Fetching CCD SO4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif  
  
1A0J.cif title:  
Crystal structure of A non-psychrophilic trypsin from A cold-adapted fish
species. [more info...]  
  
Chain information for 1A0J.cif #1  
---  
Chain | Description | UniProt  
A B C D | TRYPSIN | TRY3_SALSA 16-245  
  
Non-standard residues in 1A0J.cif #1  
---  
BEN — benzamidine  
CA — calcium ion  
SO4 — sulfate ion  
  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select ~sel & ##selected

5446 atoms, 5176 bonds, 5 pseudobonds, 1063 residues, 2 models selected  

> hide (#!1 & sel) target a

[Repeated 2 time(s)]

> hide target m

[Repeated 1 time(s)]

> show target m

> ui tool show "Color Actions"

> ui tool show "Color Key"

> ui mousemode right "color key"

> ui tool show "Color Actions"

> hide sel atoms

> hide sel cartoons

[Repeated 1 time(s)]

> show sel cartoons

> ui tool show "Color Actions"

> color sel crimson target acspfl

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /B:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /B:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A:16-245

1660 atoms, 1700 bonds, 223 residues, 1 model selected  

> select /A

1798 atoms, 1717 bonds, 5 pseudobonds, 345 residues, 2 models selected  

> select ~sel

5308 atoms, 5159 bonds, 941 residues, 2 models selected  

> select ~sel & ##selected

1798 atoms, 1717 bonds, 5 pseudobonds, 345 residues, 2 models selected  

> hide (#!1 & sel) target a

> cartoon (#!1 & sel)

> ui tool show "Basic Actions"

> ui tool show "Render/Select by Attribute"

> cartoon (#!1 & sel)

> ui tool show Matchmaker

> ui tool show AlphaFold

> show sel atoms

[Repeated 1 time(s)]

> hide sel atoms

> show sel cartoons

> hide sel cartoons

[Repeated 1 time(s)]

> show sel cartoons

> select /D

1790 atoms, 1725 bonds, 329 residues, 1 model selected  

> select /C

1757 atoms, 1717 bonds, 304 residues, 1 model selected  

> select /B

1761 atoms, 1717 bonds, 308 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel bychain

> color sel byelement

[Repeated 1 time(s)]

> color sel bychain

> ui tool show "Color Key"

> ui mousemode right "color key"

> style sel sphere

Changed 1761 atom styles  

> style sel ball

Changed 1761 atom styles  

> ui tool show "Selection Inspector"

> color sel red

> select helix

676 atoms, 680 bonds, 92 residues, 1 model selected  

> select strand

2176 atoms, 2178 bonds, 281 residues, 1 model selected  

> select /A

1798 atoms, 1717 bonds, 5 pseudobonds, 345 residues, 2 models selected  

> select helix

676 atoms, 680 bonds, 92 residues, 1 model selected  

> select down

676 atoms, 680 bonds, 92 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel bychain

> show sel cartoons

> hide sel cartoons

[Repeated 2 time(s)]

> show sel cartoons

[Repeated 1 time(s)]

> hide sel cartoons

> show sel cartoons

> rainbow sel

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 1A0J.cif_A SES surface #1.2: minimum, -16.62, mean 0.45,
maximum 10.38  
Coulombic values for 1A0J.cif_B SES surface #1.3: minimum, -11.34, mean 0.32,
maximum 11.35  
Coulombic values for 1A0J.cif_C SES surface #1.4: minimum, -15.55, mean 0.20,
maximum 10.05  
Coulombic values for 1A0J.cif_D SES surface #1.5: minimum, -19.70, mean 0.55,
maximum 11.08  
To also show corresponding color key, enter the above coulombic command and
add key true  

> coulombic sel

Coulombic values for 1A0J.cif_A SES surface #1.2: minimum, -16.62, mean 0.45,
maximum 10.38  
Coulombic values for 1A0J.cif_B SES surface #1.3: minimum, -11.34, mean 0.32,
maximum 11.35  
Coulombic values for 1A0J.cif_C SES surface #1.4: minimum, -15.55, mean 0.20,
maximum 10.05  
Coulombic values for 1A0J.cif_D SES surface #1.5: minimum, -19.70, mean 0.55,
maximum 11.08  
To also show corresponding color key, enter the above coulombic command and
add key true  

> hide sel surfaces

> hide sel atoms

> show sel atoms

> show sel cartoons

> hide sel cartoons

> style sel stick

Changed 676 atom styles  

> style sel sphere

Changed 676 atom styles  

> style sel ball

Changed 676 atom styles  

> lighting simple

> select /A/B/C/D

7106 atoms, 6876 bonds, 5 pseudobonds, 1286 residues, 2 models selected  

> show (#!1 & sel) target ab

> ui tool show "Color Actions"

> color sel bychain

> show sel atoms

> hide sel atoms

> show sel cartoons

> ui tool show "Color Actions"

> style sel stick

Changed 7106 atom styles  

> color sel bychain

> color sel byhetero

[Repeated 1 time(s)]

> color sel byelement

> color sel bynucleotide

> color sel bychain

> cd "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5"

Current working directory is: C:\Users\ashwi\OneDrive - Karolinska
Institutet\Dokument\Bioinfo course\Assignment 5  

> save "C:/Users/ashwi/OneDrive - Karolinska Institutet/Dokument/Bioinfo
> course/Assignment 5/trypsin.cxs"

——— End of log from Sat May 10 05:16:57 2025 ———

> view name session-start

opened ChimeraX session  




OpenGL version: 3.3.0 Core Profile Context 24.10.20.240607
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.4
Locale: sv_SE.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: HP
Model: HP EliteBook 845 14 inch G11 Notebook PC
OS: Microsoft Windows 11 Pro (Build 26100)
Memory: 33,585,229,824
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 8840HS w/ Radeon 780M Graphics     
OSLanguage: en-GB

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.3.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.2
    build: 1.2.2.post1
    certifi: 2025.4.26
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.3
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.5
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.2.6
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10rc202505080035
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.8.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.57.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.5.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
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    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
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    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
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    pytest-cov: 6.1.1
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    pytz: 2025.2
    pywin32: 310
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.7
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    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
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    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
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    superqt: 0.7.1
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    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.13.2
    tzdata: 2025.2
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    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1