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Opened 7 months ago
Last modified 7 months ago
#17445 assigned defect
SEQCROW: mol_builder: 'NoneType' object has no attribute 'group'
| Reported by: | Owned by: | Tony Schaefer | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22631
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\Users\Xiaoyun Huang\SEQCROW_SCRATCH\trans-9-opt Mon Apr 21 11.04.52
> 2025\trans-9-opt.sqmout" format sqmout
Opened trans-9-opt.sqmout as an sqm output file
> ui tool show "2D Builder"
Please register the custom scheme 'editor' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.
> ui mousemode right "structure eraser"
getting structure
structure will appear when optimization completes
job started: local sqm job "trans-9-opt"
job finished: local sqm job "trans-9-opt"
> open "C:\Users\Xiaoyun Huang\SEQCROW_SCRATCH\trans-9-opt Mon Apr 21 21.29.53
> 2025\trans-9-opt.sqmout" format sqmout
Opened trans-9-opt.sqmout as an sqm output file
> ui tool show "Build QM Input"
avoid using - in the comment/title section of Gaussian input
getting structure
failed to retrieve structure from CACTUS web API
https://cactus.nci.nih.gov/cgi-
bin/translate.tcl?smiles=&format=sdf&astyle=kekule&dim=3D&file=Molecule+from+ChemDoodle+Web+Components%0A%0Ahttp%3A%2F%2Fwww.ichemlabs.com%0A+12+12++0++0++0++0++++++++++++999+V2000%0A+++-0.3660++++0.3170++++0.0000+C+++0++0++0++0++0++0%0A++++0.5000++++0.8170++++0.0000+C+++0++0++0++0++0++0%0A++++1.3660++++0.3170++++0.0000+C+++0++0++0++0++0++0%0A++++1.3660+++-0.6830++++0.0000+C+++0++0++0++0++0++0%0A++++0.5000+++-1.1830++++0.0000+C+++0++0++0++0++0++0%0A+++-0.5000+++-1.1830++++0.0000+O+++0++0++0++0++0++0%0A+++-1.3660+++-0.6830++++0.0000+C+++0++0++0++0++0++0%0A+++-1.3660++++0.3170++++0.0000+C+++0++0++0++0++0++0%0A+++-0.8660++++1.1830++++0.0000+C+++0++0++0++0++0++0%0A++++1.0000+++-2.0490++++0.0000+O+++0++0++0++0++0++0%0A++++0.0000++++1.6830++++0.0000+C+++0++0++0++0++0++0%0A+++-1.3660++++2.0490++++0.0000+C+++0++0++0++0++0++0%0A++1++2++2++0++0++0++0%0A++2++3++1++0++0++0++0%0A++3++4++1++0++0++0++0%0A++4++5++1++0++0++0++0%0A++5++6++1++0++0++0++0%0A++6++7++1++0++0++0++0%0A++7++8++1++0++0++0++0%0A++8++9++1++0++0++0++0%0A++5+10++2++0++0++0++0%0A+11++1++1++0++0++0++0%0A++9+12++1++0++0++0++0%0A+12+11++1++0++0++0++0%0AM++END
structure in V3000 format:
Molecule from ChemDoodle Web Components (Modified for SEQCROW)
http://www.ichemlabs.com
0 0 0 0 0 0 0 0 0 0 0 V3000
M V30 BEGIN CTAB
M V30 COUNTS 12 12 0 0 0
M V30 BEGIN ATOM
M V30 1 C -0.3660 0.3170 0.0000
M V30 2 C 0.5000 0.8170 0.0000
M V30 3 C 1.3660 0.3170 0.0000
M V30 4 C 1.3660 -0.6830 0.0000
M V30 5 C 0.5000 -1.1830 0.0000
M V30 6 O -0.5000 -1.1830 0.0000
M V30 7 C -1.3660 -0.6830 0.0000
M V30 8 C -1.3660 0.3170 0.0000
M V30 9 C -0.8660 1.1830 0.0000
M V30 10 O 1.0000 -2.0490 0.0000
M V30 11 C 0.0000 1.6830 0.0000
M V30 12 C -1.3660 2.0490 0.0000
M V30 END ATOM
M V30 BEGIN BOND
M V30 1 2 1 2
M V30 2 1 2 3
M V30 3 1 3 4
M V30 4 1 4 5
M V30 5 1 5 6
M V30 6 1 6 7
M V30 7 1 7 8
M V30 8 1 8 9
M V30 9 2 5 10
M V30 10 1 11 1
M V30 11 1 9 12
M V30 12 1 12 11
M V30 END BOND
M V30 END CTAB
M END
structure in V2000 format:
Molecule from ChemDoodle Web Components
http://www.ichemlabs.com
12 12 0 0 0 0 999 V2000
-0.3660 0.3170 0.0000 C 0 0 0 0 0 0
0.5000 0.8170 0.0000 C 0 0 0 0 0 0
1.3660 0.3170 0.0000 C 0 0 0 0 0 0
1.3660 -0.6830 0.0000 C 0 0 0 0 0 0
0.5000 -1.1830 0.0000 C 0 0 0 0 0 0
-0.5000 -1.1830 0.0000 O 0 0 0 0 0 0
-1.3660 -0.6830 0.0000 C 0 0 0 0 0 0
-1.3660 0.3170 0.0000 C 0 0 0 0 0 0
-0.8660 1.1830 0.0000 C 0 0 0 0 0 0
1.0000 -2.0490 0.0000 O 0 0 0 0 0 0
0.0000 1.6830 0.0000 C 0 0 0 0 0 0
-1.3660 2.0490 0.0000 C 0 0 0 0 0 0
1 2 2 0 0 0 0
2 3 1 0 0 0 0
3 4 1 0 0 0 0
4 5 1 0 0 0 0
5 6 1 0 0 0 0
6 7 1 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
5 10 2 0 0 0 0
11 1 1 0 0 0 0
9 12 1 0 0 0 0
12 11 1 0 0 0 0
M END
Traceback (most recent call last):
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 626, in handle_scheme
).group(1)
^^^^^
AttributeError: 'NoneType' object has no attribute 'group'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest
self._callback(info)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-packages\chimerax\ui\gui.py",
line 438, in thread_safe
func(*args, **kw)
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 683, in handle_scheme
raise e
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 634, in handle_scheme
raise IOError(err)
OSError: 'NoneType' object has no attribute 'group'
OSError: 'NoneType' object has no attribute 'group'
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 634, in handle_scheme
raise IOError(err)
See log for complete Python traceback.
getting structure
failed to retrieve structure from CACTUS web API
https://cactus.nci.nih.gov/cgi-
bin/translate.tcl?smiles=&format=sdf&astyle=kekule&dim=3D&file=Molecule+from+ChemDoodle+Web+Components%0A%0Ahttp%3A%2F%2Fwww.ichemlabs.com%0A+12+12++0++0++0++0++++++++++++999+V2000%0A+++-0.3660++++0.3170++++0.0000+C+++0++0++0++0++0++0%0A++++0.5000++++0.8170++++0.0000+C+++0++0++0++0++0++0%0A++++1.3660++++0.3170++++0.0000+C+++0++0++0++0++0++0%0A++++1.3660+++-0.6830++++0.0000+C+++0++0++0++0++0++0%0A++++0.5000+++-1.1830++++0.0000+C+++0++0++0++0++0++0%0A+++-0.5000+++-1.1830++++0.0000+O+++0++0++0++0++0++0%0A+++-1.3660+++-0.6830++++0.0000+C+++0++0++0++0++0++0%0A+++-1.3660++++0.3170++++0.0000+C+++0++0++0++0++0++0%0A+++-0.8660++++1.1830++++0.0000+C+++0++0++0++0++0++0%0A++++1.0000+++-2.0490++++0.0000+O+++0++0++0++0++0++0%0A++++0.0000++++1.6830++++0.0000+C+++0++0++0++0++0++0%0A+++-1.3660++++2.0490++++0.0000+C+++0++0++0++0++0++0%0A++1++2++2++0++0++0++0%0A++2++3++1++0++0++0++0%0A++3++4++1++0++0++0++0%0A++4++5++1++0++0++0++0%0A++5++6++1++0++0++0++0%0A++6++7++1++0++0++0++0%0A++7++8++1++0++0++0++0%0A++8++9++1++0++0++0++0%0A++5+10++2++0++0++0++0%0A+11++1++1++0++0++0++0%0A++9+12++1++0++0++0++0%0A+12+11++1++0++0++0++0%0AM++END
structure in V3000 format:
Molecule from ChemDoodle Web Components (Modified for SEQCROW)
http://www.ichemlabs.com
0 0 0 0 0 0 0 0 0 0 0 V3000
M V30 BEGIN CTAB
M V30 COUNTS 12 12 0 0 0
M V30 BEGIN ATOM
M V30 1 C -0.3660 0.3170 0.0000
M V30 2 C 0.5000 0.8170 0.0000
M V30 3 C 1.3660 0.3170 0.0000
M V30 4 C 1.3660 -0.6830 0.0000
M V30 5 C 0.5000 -1.1830 0.0000
M V30 6 O -0.5000 -1.1830 0.0000
M V30 7 C -1.3660 -0.6830 0.0000
M V30 8 C -1.3660 0.3170 0.0000
M V30 9 C -0.8660 1.1830 0.0000
M V30 10 O 1.0000 -2.0490 0.0000
M V30 11 C 0.0000 1.6830 0.0000
M V30 12 C -1.3660 2.0490 0.0000
M V30 END ATOM
M V30 BEGIN BOND
M V30 1 2 1 2
M V30 2 1 2 3
M V30 3 1 3 4
M V30 4 1 4 5
M V30 5 1 5 6
M V30 6 1 6 7
M V30 7 1 7 8
M V30 8 1 8 9
M V30 9 2 5 10
M V30 10 1 11 1
M V30 11 1 9 12
M V30 12 1 12 11
M V30 END BOND
M V30 END CTAB
M END
structure in V2000 format:
Molecule from ChemDoodle Web Components
http://www.ichemlabs.com
12 12 0 0 0 0 999 V2000
-0.3660 0.3170 0.0000 C 0 0 0 0 0 0
0.5000 0.8170 0.0000 C 0 0 0 0 0 0
1.3660 0.3170 0.0000 C 0 0 0 0 0 0
1.3660 -0.6830 0.0000 C 0 0 0 0 0 0
0.5000 -1.1830 0.0000 C 0 0 0 0 0 0
-0.5000 -1.1830 0.0000 O 0 0 0 0 0 0
-1.3660 -0.6830 0.0000 C 0 0 0 0 0 0
-1.3660 0.3170 0.0000 C 0 0 0 0 0 0
-0.8660 1.1830 0.0000 C 0 0 0 0 0 0
1.0000 -2.0490 0.0000 O 0 0 0 0 0 0
0.0000 1.6830 0.0000 C 0 0 0 0 0 0
-1.3660 2.0490 0.0000 C 0 0 0 0 0 0
1 2 2 0 0 0 0
2 3 1 0 0 0 0
3 4 1 0 0 0 0
4 5 1 0 0 0 0
5 6 1 0 0 0 0
6 7 1 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
5 10 2 0 0 0 0
11 1 1 0 0 0 0
9 12 1 0 0 0 0
12 11 1 0 0 0 0
M END
Traceback (most recent call last):
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 626, in handle_scheme
).group(1)
^^^^^
AttributeError: 'NoneType' object has no attribute 'group'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest
self._callback(info)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\ui\htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-packages\chimerax\ui\gui.py",
line 438, in thread_safe
func(*args, **kw)
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 683, in handle_scheme
raise e
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 634, in handle_scheme
raise IOError(err)
OSError: 'NoneType' object has no attribute 'group'
OSError: 'NoneType' object has no attribute 'group'
File "C:\Users\Xiaoyun Huang\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\SEQCROW\tools\mol_builder.py", line 634, in handle_scheme
raise IOError(err)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 560.94
OpenGL renderer: NVIDIA GeForce RTX 3050/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: zh_CN.cp936
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows
Manufacturer: Gigabyte Technology Co., Ltd.
Model: B650M GAMING WIFI
OS: Microsoft Windows 11 专业版 (Build 22631)
Memory: 33,409,052,672
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 9600X 6-Core Processor
OSLanguage: zh-CN
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.8.30
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pywin32: 306
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
Send2Trash: 1.8.3
SEQCROW: 1.8.20
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (1)
comment:1 by , 7 months ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → SEQCROW: mol_builder: 'NoneType' object has no attribute 'group' |
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