![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17479 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.6-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 230000,
"procRole" : "Background",
"version" : 2,
"userID" : 90692281,
"deployVersion" : 210,
"modelCode" : "Mac14,10",
"coalitionID" : 1241,
"osVersion" : {
"train" : "macOS 13.6",
"build" : "22G120",
"releaseType" : "User"
},
"captureTime" : "2025-04-24 11:41:14.9324 -0400",
"incident" : "ED1EEA11-E18B-4A19-B39D-D7573B9CCD35",
"pid" : 62616,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-04-23 14:04:05.7908 -0400",
"procStartAbsTime" : 4680618219294,
"procExitAbsTime" : 5746782652487,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"C920288F-2781-5B7D-B19F-37D5A3520A45","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "BFC18746-CC76-7C57-91A2-6FB059C2694E",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 3,
"sleepWakeUUID" : "B0033C0E-1D1C-49E8-9ADF-F5252E31DAE6",
"sip" : "enabled",
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"os_fault" : {"process":"ChimeraX"},
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"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6721298432,
"size" : 577528,
"uuid" : "3ee92404-8fc3-374b-a598-d5c9a8cd64b5",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
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"size" : 3553476608,
"uuid" : "c26be8cd-619e-3513-8673-3ff826317005"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.7G resident=0K(0%) swapped_out_or_unallocated=1.7G(100%)\nWritable regions: Total=4.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.4G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 768K 6 \nActivity Tracing 256K 1 \nCG backing stores 11.1M 16 \nCG image 608K 27 \nColorSync 592K 30 \nCoreAnimation 352K 21 \nCoreGraphics 128K 8 \nCoreUI image data 1776K 15 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 3.0G 459 \nMALLOC guard page 192K 10 \nMALLOC_MEDIUM (reserved) 384.0M 6 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.8M 49 \nStack 168.2M 49 \nVM_ALLOCATE 283.7M 227 \nVM_ALLOCATE (reserved) 256.0M 4 reserved VM address space (unallocated)\n__AUTH 1878K 379 \n__AUTH_CONST 29.2M 614 \n__CTF 824 1 \n__DATA 20.7M 764 \n__DATA_CONST 39.9M 769 \n__DATA_DIRTY 2021K 238 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 832.2M 154 \n__OBJC_RO 66.4M 1 \n__OBJC_RW 2012K 1 \n__TEXT 876.9M 789 \ndyld private memory 320K 3 \nmapped file 223.4M 61 \nshared memory 3376K 31 \n=========== ======= ======= \nTOTAL 6.5G 4746 \nTOTAL, minus reserved VM space 5.5G 4746 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "f14911ae1d3b81ce9ccc964732bcaff1b2be4909",
"trialInfo" : {
"rollouts" : [
{
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}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/nguyenlan/Documents/2B05 - Figures/N1-Cam23-sNAp - 2B05 Fabs
> contact residues.cxs" format session
opened ChimeraX session
> select #1/g:30-31, 53-56, 101-107 #1/h:28-32,91,92,52,65-70
213 atoms, 214 bonds, 27 residues, 1 model selected
> view sel
> ui tool show "Side View"
> select /h:264
Nothing selected
> select /c:264
25 atoms, 22 bonds, 3 residues, 3 models selected
> show sel & #!1 atoms
> style sel & #!1 stick
Changed 7 atom styles
> color sel & #!1 byhetero
> select clear
> ui tool show "Side View"
> save "/Users/nguyenlan/Documents/2B05 - Figures/2B05_HC and LC-N1
> contacts_1.png" width 1152 height 795 supersample 4 transparentBackground
> true
> close session
> open "/Users/nguyenlan/Documents/2B05 - Figures/2B05 HC and LC loops - N1
> Cam23.cxs" format session
opened ChimeraX session
> close session
> open "/Users/nguyenlan/Documents/2B05 - Figures/2B05 epitope.pdb" format pdb
Chain information for 2B05 epitope.pdb #1
---
Chain | Description
A | No description available
B D | No description available
C | No description available
E G I K | No description available
F H J L | No description available
> close session
> open "/Users/nguyenlan/Documents/2B05 - Figures/2B05-HC and LC loops vs
> N1Cam23.cxs" format session
opened ChimeraX session
> close session
> open "/Users/nguyenlan/Documents/2B05 - Figures/2B05 HC and LC loops - N1
> Cam23.cxs" format session
opened ChimeraX session
> open /Users/nguyenlan/Downloads/bsa_coloring.defattr
Failed opening file /Users/nguyenlan/Downloads/bsa_coloring.defattr:
Bad atom specifier (:93.B) on line 4 of bsa_coloring.defattr
> info models
model id #1 type AtomicStructure name "2B05 epitope.pdb"
model id #1.1 type PseudobondGroup name "missing structure"
model id #1.2 type MolecularSurface name "2B05 epitope.pdb_A SES surface"
model id #1.3 type MolecularSurface name "2B05 epitope.pdb_B SES surface"
model id #1.4 type MolecularSurface name "2B05 epitope.pdb_C SES surface"
model id #1.5 type MolecularSurface name "2B05 epitope.pdb_D SES surface"
model id #2 type AtomicStructure name 4qnp
model id #2.1 type PseudobondGroup name "metal coordination bonds"
model id #2.2 type MolecularSurface name "4qnp_A SES surface"
model id #2.3 type MolecularSurface name "4qnp_B SES surface"
model id #2.4 type ObjectLabels name labels
model id #2.5 type ObjectLabels name labels
model id #3 type AtomicStructure name 6pzw
model id #3.1 type MolecularSurface name "6pzw_A SES surface"
model id #3.2 type MolecularSurface name "6pzw_B SES surface"
model id #3.3 type MolecularSurface name "6pzw_C SES surface"
model id #3.4 type MolecularSurface name "6pzw_D SES surface"
model id #3.5 type ObjectLabels name labels
model id #4 type AtomicStructure name 8e6j
model id #4.1 type MolecularSurface name "8e6j_A SES surface"
model id #4.2 type MolecularSurface name "8e6j_B SES surface"
model id #4.3 type MolecularSurface name "8e6j_C SES surface"
model id #4.4 type MolecularSurface name "8e6j_D SES surface"
model id #4.5 type ObjectLabels name labels
> open /Users/nguyenlan/Downloads/bsa_coloring_model1.defattr
Failed opening file /Users/nguyenlan/Downloads/bsa_coloring_model1.defattr:
Bad atom specifier (#1:93.B) on line 4 of bsa_coloring_model1.defattr
> select :93.B
Expected an objects specifier or a keyword
> info residues :.B
Expected a keyword
> select :.B
Expected an objects specifier or a keyword
> select :B
Nothing selected
> select /b
11797 atoms, 12088 bonds, 14 pseudobonds, 1564 residues, 6 models selected
> info chains
chain id #1/A chain_id A
chain id #1/B chain_id B
chain id #1/C chain_id C
chain id #1/D chain_id D
chain id #1/E chain_id E
chain id #1/F chain_id F
chain id #1/G chain_id G
chain id #1/H chain_id H
chain id #1/I chain_id I
chain id #1/J chain_id J
chain id #1/K chain_id K
chain id #1/L chain_id L
chain id #2/A chain_id A
chain id #2/B chain_id B
chain id #2/F chain_id F
chain id #2/E chain_id E
chain id #2/L chain_id L
chain id #2/H chain_id H
chain id #3/A chain_id A
chain id #3/I chain_id I
chain id #3/K chain_id K
chain id #3/D chain_id D
chain id #3/E chain_id E
chain id #3/F chain_id F
chain id #3/G chain_id G
chain id #3/J chain_id J
chain id #3/C chain_id C
chain id #3/B chain_id B
chain id #3/L chain_id L
chain id #3/H chain_id H
chain id #4/A chain_id A
chain id #4/L chain_id L
chain id #4/H chain_id H
chain id #4/B chain_id B
chain id #4/I chain_id I
chain id #4/E chain_id E
chain id #4/C chain_id C
chain id #4/J chain_id J
chain id #4/F chain_id F
chain id #4/D chain_id D
chain id #4/K chain_id K
chain id #4/G chain_id G
> chain id #1/A chain_id A
Unknown command: chain id #1/A chain_id A
> chain id #1/B chain_id B
Unknown command: chain id #1/B chain_id B
> chain id #1/C chain_id C
Unknown command: chain id #1/C chain_id C
> chain id #1/D chain_id D
Unknown command: chain id #1/D chain_id D
> chain id #1/E chain_id E
Unknown command: chain id #1/E chain_id E
> chain id #1/F chain_id F
Unknown command: chain id #1/F chain_id F
> chain id #1/G chain_id G
Unknown command: chain id #1/G chain_id G
> chain id #1/H chain_id H
Unknown command: chain id #1/H chain_id H
> chain id #1/I chain_id I
Unknown command: chain id #1/I chain_id I
> chain id #1/J chain_id J
Unknown command: chain id #1/J chain_id J
> chain id #1/K chain_id K
Unknown command: chain id #1/K chain_id K
> chain id #1/L chain_id L
Unknown command: chain id #1/L chain_id L
> open /Users/nguyenlan/Downloads/bsa_coloring_clean.defattr
Failed opening file /Users/nguyenlan/Downloads/bsa_coloring_clean.defattr:
Bad atom specifier (:93.B) on line 3 of bsa_coloring_clean.defattr
> select /b:93
28 atoms, 27 bonds, 4 residues, 4 models selected
> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr
Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr
---
note | Assigned attribute 'bsa_value' to 108 residues using match mode: any
> color byattribute bsa_value palette blue:white:red target r
9105 residues, atom bsa_value range 14 to 146
> select clear
> color byattribute bsa_value palette blue:white:red range 20,150 target r
9105 residues, atom bsa_value range 14 to 146
> surface
> color byattribute bsa_value palette blue:white:red target s
42 surfaces, atom bsa_value range 14 to 146
> show only /a /b /c /d
Expected a keyword
> hide /e /f /g /h/ k /l /i /j
> select /e /f /g /h/ k /l /i /j
27792 atoms, 28391 bonds, 8 pseudobonds, 3694 residues, 5 models selected
> hide sel & #!1 surfaces
> select /c:217
22 atoms, 19 bonds, 3 residues, 3 models selected
> color (#!1 & sel) gray
> select clear
> color byattribute bsa_value palette #440154:#21908C:#FDE725 target r
9105 residues, atom bsa_value range 14 to 146
> surface color byattribute bsa_value palette #440154:#21908C:#FDE725 target r
Invalid "color" argument: Invalid color name or specifier
> color byattribute bsa_value palette #440154:#21908C:#FDE725 target s
42 surfaces, atom bsa_value range 14 to 146
> close session
> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr format
> defattr
Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr
---
note | Assigned attribute 'bsa_value' to 0 residues using match mode: any
> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr format
> defattr
Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr
---
note | Assigned attribute 'bsa_value' to 0 residues using match mode: any
> open "/Users/nguyenlan/Documents/2B05 - Figures/2B05 HC and LC loops - N1
> Cam23.cxs" format session
opened ChimeraX session
> select #1/c: 93, 94, 95,353, 354, 355, 358, 375, 377, 378, 384, 386, 388,
> 389, 449, 450, 451
144 atoms, 142 bonds, 17 residues, 1 model selected
> select #1/b: 93, 94, 95,353, 354, 355, 358, 375, 377, 378, 384, 386, 388,
> 389, 449, 450, 451
144 atoms, 142 bonds, 17 residues, 1 model selected
> select #1/d:214, 215, 216, 219, 254, 256, 262, 263, 264, 265, 266
95 atoms, 93 bonds, 11 residues, 1 model selected
> select #1/c:214, 215, 216, 219, 254, 256, 262, 263, 264, 265, 266
95 atoms, 93 bonds, 11 residues, 1 model selected
> select #1/c:217
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!1 & sel) gray
> color (#!1 & sel) dark gray
> select clear
> view orient
> turn x 90
> turn y 45
> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr
Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr
---
note | Assigned attribute 'bsa_value' to 100 residues using match mode: any
> color byattribute bsa_value palette #440154:#21908C:#FDE725 target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #FDE725:#21908C:#440154 target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #440154:#21908C:#FDE725 range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #FDE725:#21908C:#440154 range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #2166AC:#F7F7F7:#B2182B range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #2166AC:#F7F7F7:#B2182B range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #FDE725:#21908C:#440154 range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette cyan:white:magenta range 5,95 target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s
14 surfaces, atom bsa_value range 5.2 to 93.2
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,10
Model Number: MNW83LL/A
Chip: Apple M2 Pro
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8422.141.2
OS Loader Version: 8422.141.2
Software:
System Software Overview:
System Version: macOS 13.6 (22G120)
Kernel Version: Darwin 22.6.0
Time since boot: 5 days, 23 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 19
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Dell P2723D:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Hp Z27K G3:
Resolution: 2160 x 3840
UI Looks like: 1080 x 1920 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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