![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 months ago
Closed 7 months ago
#17456 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00000001ef88f840 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, cython.cimports.libc.math, scipy._lib._ccallback_c, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, scipy.optimize._direct (total: 110)
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"codeSigningMonitor" : 1,
"incident" : "3B35E55B-5218-4B2F-88C1-1D735A88FA7F",
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"procLaunch" : "2025-04-19 16:58:30.9991 -0400",
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"procExitAbsTime" : 24559949267724,
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}
},
"logWritingSignature" : "1ce6b34acdab43736b107dff2e1fdeee883f5ba0",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "64b21a7351cbb02ce3442e4e",
"factorPackIds" : {
"REMINDERS_GROCERY" : "6647f0f7b6a75d3dc32993e7"
},
"deploymentId" : 240000042
},
{
"rolloutId" : "5fb4245a1bbfe8005e33a1e1",
"factorPackIds" : {
},
"deploymentId" : 240000021
}
],
"experiments" : [
{
"treatmentId" : "28060e10-d4e5-4163-aa2b-d8bd088d5cbf",
"experimentId" : "6685b283afc7c17197d69eec",
"deploymentId" : 400000008
}
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/bcorsaro/Desktop/ChimeraX/Figures_ReviewPaper2025/allFASTK_alingedbyCterm.pdb
Summary of feedback from opening
/Users/bcorsaro/Desktop/ChimeraX/Figures_ReviewPaper2025/allFASTK_alingedbyCterm.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 82 GLN A 91 1 10
Start residue of secondary structure not found: HELIX 2 2 PRO A 95 GLN A 104 1
10
Start residue of secondary structure not found: HELIX 3 3 PRO A 106 LYS A 108
1 3
Start residue of secondary structure not found: HELIX 4 4 ALA A 111 HIS A 113
1 3
Start residue of secondary structure not found: HELIX 5 5 TYR A 114 LEU A 125
1 12
180 messages similar to the above omitted
Chain information for allFASTK_alingedbyCterm.pdb
---
Chain | Description
1.1/A | No description available
1.2/B | No description available
1.3/C | No description available
1.4/D | No description available
1.5/E | No description available
1.6/F | No description available
Computing secondary structure
> set bgColor white
> view "Justins_view"
Expected an objects specifier or a view name or a keyword
> open /Users/bcorsaro/Desktop/9gek_alignedCterm.pdb
Chain information for 9gek_alignedCterm.pdb #2
---
Chain | Description
G | No description available
41 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> lighting soft
> lighting full
> graphics silhouettes true
> color bfactor palette alphafold
34032 atoms, 3940 residues, atom bfactor range 15.3 to 153
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> select clear
> hide #1.1 models
> hide #1.2 models
> hide #1.3 models
> hide #1.4 models
> hide #1.5 models
> hide #1.6 models
> show #1.6 models
> hide #1.6 models
> show #1.5 models
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> transparency sel 0 cartoons
> transparency sel 100 cartoons
> select clear
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> ui tool show "Color Actions"
> color sel dark orange
> color sel navy
> color sel light sky blue
> color sel violet
> color sel plum
> color sel magenta
> color sel hot pink
> color sel magenta
> color sel medium slate blue
> color sel rebecca purple
> color sel magenta
> select clear
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> ui tool show "Color Actions"
> color sel maroon
> color sel chocolate
> color sel coral
> color sel sienna
> color sel indian red
> color sel peru
> color sel dark goldenrod
> color sel gray
> color sel lavender
> color sel tan
> color sel rosy brown
> color sel burly wood
> color sel tan
> color sel rosy brown
> color sel dark green
> color sel dark olive green
> color sel dark slate gray
> color sel pale violet red
> color sel purple
> color sel dark magenta
> color sel dark orchid
> color sel hot pink
> select clear
> save /Users/bcorsaro/Desktop/image2.png supersample 3
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> color sel orange
> select clear
> save /Users/bcorsaro/Desktop/image3.png supersample 3
> view name Justins_view
> save /Users/bcorsaro/Desktop/image4.png supersample 3
> hide #!2 models
> show #1.6 models
> save /Users/bcorsaro/Desktop/image1.png supersample 3
> hide #1.6 models
> show #1.4 models
> save /Users/bcorsaro/Desktop/image2.png supersample 3
> hide #1.4 models
> show #1.3 models
> save /Users/bcorsaro/Desktop/image3.png supersample 3
> hide #1.3 models
> show #1.2 models
> save /Users/bcorsaro/Desktop/image4.png supersample 3
> show #1.1 models
> hide #1.2 models
> save /Users/bcorsaro/Desktop/image5.png supersample 3
> hide #1.1 models
> hide #!1 models
> show #!1 models
> color bfactor palette alphafold
34032 atoms, 3940 residues, atom bfactor range 15.3 to 153
> transparency sel 0 cartoons
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> save /Users/bcorsaro/Desktop/image6.png supersample 3
> select down
Nothing selected
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> transparency sel 100 cartoons
> show #!2 models
> select clear
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> ui tool show "Color Actions"
> color sel dark turquoise
> color sel hot pink
> select clear
> save /Users/bcorsaro/Desktop/image7.png supersample 3
> hide #!2 models
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #1.5/E
Alignment identifier is 1.5/E
> select #1.5/E:68
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.5/E:68-286
1759 atoms, 1789 bonds, 219 residues, 1 model selected
> color sel medium orchid
> select #1.5/E:287
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.5/E:287-631
2722 atoms, 2793 bonds, 345 residues, 1 model selected
> color sel orange
> select clear
> save /Users/bcorsaro/Desktop/image8.png supersample 3
> color confidence
Unknown command: alphafold color confidence
> show #1.4 models
> hide #1.5 models
> color confidence
Unknown command: alphafold color confidence
> ui tool show "Color Key"
> ui mousemode right "color key"
> key delete
> ui mousemode right translate
> ui tool show "Scale Bar"
> scalebar
> scalebar off
> ui tool show "Surface Color"
> key red-white-blue :0.0 :0.5 :1.0 showTool true
> ui mousemode right "color key"
> key delete
> ui mousemode right translate
> color key palette alphafold confidence range 0,100 label "pLDDT" size
> 0.3,0.05 pos 0.8,0.05
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> hide #1.4 models
> show #1.5 models
> show #!2 models
> color bfactor palette alphafold
34032 atoms, 3940 residues, atom bfactor range 15.3 to 153
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> ui tool show "Color Actions"
> color sel magenta
> color sel hot pink
> color sel deep pink
> color sel hot pink
> select clear
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> color (#!2 & sel) magenta
> select clear
> view name Justins_view
> save /Users/bcorsaro/Desktop/image2.png supersample 3
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> ui tool show "Color Actions"
> color sel hot pink
> color sel violet
> color sel plum
> color sel hot pink
> select clear
> save /Users/bcorsaro/Desktop/image3.png supersample 3
> select
> #1.5/E:69-78,82-89,97-112,115-118,121-123,125-140,143-156,163-175,181-194,198-213,215-217,221-234,236-252,255-267,273-285,292-304,310-326,329-341,347-359,366-379,386-397,401-403,406-418,424-431,433-439,445-463,475-478,482-484,491-504,537-539,568-570,580-591,601-606,610-629
2974 atoms, 3004 bonds, 371 residues, 1 model selected
> open /Users/bcorsaro/Downloads/cif_pdb_pymol/9gek_edited2.pdb
9gek_edited2.pdb title:
Structure of the FAST1-FAST2-rap module from human FASTKD4 by carrier- driven
crystallisation with maltose binding protein from E. Coli. [more info...]
Chain information for 9gek_edited2.pdb #6
---
Chain | Description
A | maltose/maltodextrin-binding periplasmic protein,fast kinase domain-containing protein 4,fast kinase domain-containing protein 4
41 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> view name Justins_view
> hide #1.5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> ui tool show "Show Sequence Viewer"
> sequence chain #6/A
Alignment identifier is 6/A
> select #6/A:-58--57
29 atoms, 28 bonds, 2 residues, 1 model selected
> select #6/A:-58-332
5995 atoms, 6065 bonds, 391 residues, 1 model selected
> select #6/A:308
14 atoms, 13 bonds, 1 residue, 1 model selected
> select #6/A:-58-308
5649 atoms, 5718 bonds, 367 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dim gray
> color sel gray
> color sel silver
> color sel light gray
> color sel gray
> select #6/A:309-471
2559 atoms, 2591 bonds, 163 residues, 1 model selected
> select #6/A:309-633
5013 atoms, 5075 bonds, 1 pseudobond, 317 residues, 2 models selected
> color sel hot pink
> color sel lime
> color sel hot pink
> color sel violet
> color sel pale violet red
> select clear
> graphics silhouettes false
> graphics silhouettes true
> save /Users/bcorsaro/Desktop/image2.png supersample 3
> show #!2 models
> hide #!6 models
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> ui tool show "Color Actions"
> color sel pale violet red
> select clear
> show #1.5 models
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> select up
29067 atoms, 29698 bonds, 3626 residues, 6 models selected
> select up
29067 atoms, 29698 bonds, 3626 residues, 7 models selected
> select up
44694 atoms, 45519 bonds, 4624 residues, 9 models selected
> transparency sel 100 cartoons
> select clear
> select #6/A
10662 atoms, 10794 bonds, 1 pseudobond, 684 residues, 2 models selected
> transparency sel 0 cartoons
> show #!6 models
> hide #!6 models
> hide #!2 models
> show #!2 models
> select #2/G
4965 atoms, 5027 bonds, 1 pseudobond, 314 residues, 2 models selected
> transparency sel 0 cartoons
> select clear
> save /Users/bcorsaro/Desktop/image3.png supersample 3
> select #6/A:309-310
31 atoms, 30 bonds, 2 residues, 1 model selected
> select #6/A:309-311
48 atoms, 47 bonds, 3 residues, 1 model selected
> transparency sel 100 cartoons
> select clear
> show #!6 models
> hide #!2 models
> hide #1.5 models
> select #6/A:309-310
31 atoms, 30 bonds, 2 residues, 1 model selected
> select #6/A:309-311
48 atoms, 47 bonds, 3 residues, 1 model selected
> color sel light gray
> transparency sel 0 cartoons
> color sel gray
> select clear
> save /Users/bcorsaro/Desktop/image4.png supersample 3
> hide #!6 models
> show #1.5 models
> view "Justins_view"
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> save /Users/bcorsaro/Desktop/image1.png supersample 3
> ui tool show "Color Key"
> ui mousemode right "color key"
> key delete
> ui mousemode right translate
> key red:low orange: yellow: cornflowerblue: blue:high
Fetching compressed palette confidence from
https://www.colourlovers.com/api/palettes?keywords=confidence&format=json&numResults=100
Found 6 ColourLover palettes with name "confidence", using palette id 12007 by
author Peasly with most views (755). To choose a different one use "name by
author" or id number.
> key red:low confidenceorange:: yellow: cornflowerblue: blue:high confidence
> key red:low orange: yellow: cornflowerblue: blue:high
> view "Justins_view"
> show #1.6 models
> hide #1.5 models
> show #1.5 models
> hide #1.5 models
> select #1.6/F
5253 atoms, 5369 bonds, 654 residues, 1 model selected
> transparency sel 0 cartoons
> show #1.5 models
> select #1.5/E
4481 atoms, 4583 bonds, 564 residues, 1 model selected
> transparency sel 100 cartoons
> select clear
> view "Justins_view"
> zoom 0.5
> zoom 1.5
Unsupported scale factor (0.000000) detected on Display0
> show #1.2 models
> hide #1.5 models
> show #1.5 models
> hide #1.6 models
> hide #1.2 models
> show #1.2 models
> color bfactor palette alphafold
44694 atoms, 4624 residues, atom bfactor range 15.3 to 153
> select #1.1/A
3732 atoms, 3827 bonds, 469 residues, 1 model selected
> color bfactor palette alphafold
44694 atoms, 4624 residues, atom bfactor range 15.3 to 153
> select #1.1/A
3732 atoms, 3827 bonds, 469 residues, 1 model selected
> color bfactor palette alphafold
44694 atoms, 4624 residues, atom bfactor range 15.3 to 153
> select #1.2/B
6553 atoms, 6689 bonds, 812 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> cartoon style #8#1.2,5#!1 modeHelix tube sides 20
> cartoon style #8#1.2,5#!1 xsection oval modeHelix default
> ui tool show "Side View"
> zoom 0.5
moved plane far -225.77425126980683 [-0.4548518 -0.11830358 -0.88267441]
> save /Users/bcorsaro/Desktop/image1.png supersample 3
> hide #1.2 models
> show #1.1 models
> select #1.1/A
3732 atoms, 3827 bonds, 469 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> save /Users/bcorsaro/Desktop/image2.png supersample 3
> zoom 1.5
moved plane far 142.8089937247722 [-0.4548518 -0.11830358 -0.88267441]
> zoom 0.5
moved plane far -285.61798634558573 [-0.4548518 -0.11830358 -0.88267441]
> zoom 1.5
moved plane far 190.4119916330296 [-0.4548518 -0.11830358 -0.88267441]
> save /Users/bcorsaro/Desktop/image3.png supersample 3
> hide #1.1 models
> show #1.2 models
> save /Users/bcorsaro/Desktop/image1.png supersample 3
> ui tool show "Color Key"
> ui mousemode right "color key"
> key delete
> ui mousemode right translate
> save /Users/bcorsaro/Desktop/image2.png supersample 3
> hide #1.2 models
> show #1.3 models
> select #1.3/C
4506 atoms, 4594 bonds, 561 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> save /Users/bcorsaro/Desktop/image3.png supersample 3
> hide #1.3 models
> show #1.4 models
> select #1.3/C
4506 atoms, 4594 bonds, 561 residues, 1 model selected
> select #1.4/D
4542 atoms, 4636 bonds, 566 residues, 1 model selected
> transparency sel 0 cartoons
> select clear
> save /Users/bcorsaro/Desktop/image4.png supersample 3
> hide #1.4 models
> show #1.6 models
> save /Users/bcorsaro/Desktop/image5.png supersample 3
> hide #1.5 models
> hide #1.6 models
> show #!6 models
> select #6/A:-58
14 atoms, 13 bonds, 1 residue, 1 model selected
> select #6/A:-58-311
5697 atoms, 5766 bonds, 370 residues, 1 model selected
> ui tool show "Color Actions"
> color sel gray
> select clear
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: MC8H4LL/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.41.5
OS Loader Version: 11881.41.5
Software:
System Software Overview:
System Version: macOS 15.1 (24B83)
Kernel Version: Darwin 24.1.0
Time since boot: 46 days, 20 hours, 28 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
PHL 279P1:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 30.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
narwhals: 1.31.0
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 2.2.4
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
plotly: 6.0.1
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pyKVFinder: 0.7.3
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
toml: 0.10.2
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 7 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 7 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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