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Opened 6 months ago
Last modified 6 months ago
#17489 assigned defect
ArtiaX: save particle list: KeyError: 'rlnTomoName'
| Reported by: | Owned by: | Utz Ermel | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.14.0-578.el9.x86_64-x86_64-with-glibc2.34
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
Opened Position_38_7p52A.mrc as #1.1.1, grid size 1024,1024,376, pixel
7.52,7.52,7.52, shown at level 0.0385, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
> open
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_00.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_01.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_02.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_03.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_04.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_05.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_06.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_07.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_08.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_09.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_10.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_11.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_12.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_13.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_14.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_15.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_16.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_17.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_18.star
> /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_mod_19.star
> format star
Opened Particle list Position_38_mod_00.star with 1882 particles.
Opened Particle list Position_38_mod_01.star with 1882 particles.
Opened Particle list Position_38_mod_02.star with 1882 particles.
Opened Particle list Position_38_mod_03.star with 1882 particles.
Opened Particle list Position_38_mod_04.star with 1882 particles.
Opened Particle list Position_38_mod_05.star with 1882 particles.
Opened Particle list Position_38_mod_06.star with 1882 particles.
Opened Particle list Position_38_mod_07.star with 1882 particles.
Opened Particle list Position_38_mod_08.star with 1882 particles.
Opened Particle list Position_38_mod_09.star with 1882 particles.
Opened Particle list Position_38_mod_10.star with 1882 particles.
Opened Particle list Position_38_mod_11.star with 1882 particles.
Opened Particle list Position_38_mod_12.star with 1881 particles.
Opened Particle list Position_38_mod_13.star with 1881 particles.
Opened Particle list Position_38_mod_14.star with 1881 particles.
Opened Particle list Position_38_mod_15.star with 1881 particles.
Opened Particle list Position_38_mod_16.star with 1881 particles.
Opened Particle list Position_38_mod_17.star with 1881 particles.
Opened Particle list Position_38_mod_18.star with 1881 particles.
Opened Particle list Position_38_mod_19.star with 1881 particles.
> artiax particles #1.2.6 originScaleFactor 7.52
> artiax view xy
> artiax particles #1.2.6 transScaleFactor 1.0
> artiax view xy
> hide #!1.1.1 models
> hide #!1.2.7 models
> hide #!1.2.8 models
> hide #!1.2.9 models
> hide #!1.2.10 models
> hide #!1.2.11 models
> hide #!1.2.12 models
> hide #!1.2.13 models
> hide #!1.2.14 models
> hide #!1.2.15 models
> hide #!1.2.16 models
> hide #!1.2.17 models
> hide #!1.2.18 models
> hide #!1.2.19 models
> hide #!1.2.20 models
> hide #!1.2.6 models
> hide #!1.2.1 models
> hide #!1.2.2 models
> hide #!1.2.3 models
> hide #!1.2.4 models
> show #!1.2.4 models
> hide #!1.2.4 models
> hide #!1.2.5 models
> show #!1.2.1 models
> artiax particles #1.2.1 originScaleFactor 7.52
> artiax view xy
> artiax particles #1.2.1 transScaleFactor 1.0
> artiax view xy
> ui mousemode right select
Drag select of axes, 317 of 1882 instances, 318 atoms
Drag select of axes, 154 of 1558 instances, 152 atoms
Drag select of axes, 43 of 1400 instances, 41 atoms
Drag select of axes, 3 of 1354 instances, 4 atoms
> select clear
[Repeated 1 time(s)]Drag select of axes, 9 of 1354 instances, 7 atoms
> select clear
Drag select of axes, 18 of 1354 instances, 17 atoms
Drag select of axes, 16 of 1337 instances, 17 atoms
Drag select of axes, 3 of 1320 instances
> select clear
Drag select of 1 atoms
Drag select of axes, 100 of 1319 instances, 107 atoms
Drag select of axes, 38 of 1208 instances, 36 atoms
Drag select of 2 atoms
Drag select of axes, 23 of 1169 instances, 23 atoms
> select clear
Drag select of axes, 39 of 1169 instances, 40 atoms
Drag select of axes, 113 of 1129 instances, 112 atoms
Drag select of axes, 2 of 1012 instances, 1 atoms
Drag select of axes, 42 of 1010 instances, 46 atoms
Drag select of axes, 2 of 962 instances, 2 atoms
Drag select of axes, 2 of 960 instances, 2 atoms
Drag select of axes, 31 of 958 instances, 28 atoms
> select clear
Drag select of axes, 35 of 958 instances, 34 atoms
> select clear
[Repeated 1 time(s)]Drag select of axes, 30 of 958 instances, 28 atoms
> select #1.2.1.3/M:587@M
1 atom, 1 residue, 1 model selected
Drag select of axes, 40 of 958 instances, 39 atoms
> select clear
Drag select of axes, 34 of 958 instances, 33 atoms
> select clear
Drag select of axes, 31 of 958 instances, 29 atoms
> select clear
Drag select of axes, 1 of 958 instances
Drag select of axes, 16 of 958 instances, 14 atoms
> artiax view xy
Drag select of axes, 9 of 942 instances, 11 atoms
Drag select of axes, 13 of 931 instances, 15 atoms
> select clear
Drag select of axes, 4 of 931 instances, 2 atoms
Drag select of axes, 9 of 931 instances, 7 atoms
Drag select of 2 atoms
Drag select of axes, 5 of 919 instances, 7 atoms
Drag select of axes, 10 of 912 instances, 10 atoms
Drag select of axes, 1 of 902 instances, 1 atoms
Drag select of axes, 10 of 902 instances, 11 atoms
Drag select of axes, 20 of 890 instances, 20 atoms
Drag select of axes, 2 of 869 instances, 3 atoms
Drag select of axes, 4 of 866 instances, 3 atoms
Drag select of axes, 1 of 862 instances, 1 atoms
Drag select of axes, 4 of 861 instances, 3 atoms
Drag select of axes, 16 of 857 instances, 14 atoms
Drag select of axes, 1 of 841 instances, 1 atoms
Drag select of axes, 5 of 840 instances, 7 atoms
Drag select of axes, 3 of 833 instances, 4 atoms
Drag select of axes, 2 of 829 instances
Drag select of 2 atoms
Drag select of axes, 2 of 829 instances, 3 atoms
Drag select of axes, 2 of 826 instances, 2 atoms
Drag select of axes, 1 of 823 instances, 1 atoms
Drag select of axes, 1 of 822 instances, 1 atoms
Drag select of 1 atoms
> save /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_00.star
> partlist #1.2.1
Traceback (most recent call last):
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/tool.py", line 344, in _save_partlist
show_save_file_dialog(self.session)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/widgets/ArtiaXSaveDialog.py", line 52, in
show_save_file_dialog
_dlg.display(session, **kw)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/widgets/ArtiaXSaveDialog.py", line 43, in display
run(session, cmd)
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/formats.py", line 44, in save
save_particle_list(session, path, partlist, format_name=self.name)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/io.py", line 137, in save_particle_list
save_data.write_file(file_name=file_name, additional_files=additional_files)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 317, in
write_file
data.pop('rlnTomoName')
KeyError: 'rlnTomoName'
KeyError: 'rlnTomoName'
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 317, in
write_file
data.pop('rlnTomoName')
See log for complete Python traceback.
> save /data1/luyichen/YFH/matching/pixel_star/Position_38/Position_38_00.star
> partlist #1.2.1
Traceback (most recent call last):
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/tool.py", line 344, in _save_partlist
show_save_file_dialog(self.session)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/widgets/ArtiaXSaveDialog.py", line 52, in
show_save_file_dialog
_dlg.display(session, **kw)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/widgets/ArtiaXSaveDialog.py", line 43, in display
run(session, cmd)
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/formats.py", line 44, in save
save_particle_list(session, path, partlist, format_name=self.name)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/io.py", line 137, in save_particle_list
save_data.write_file(file_name=file_name, additional_files=additional_files)
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 317, in
write_file
data.pop('rlnTomoName')
KeyError: 'rlnTomoName'
KeyError: 'rlnTomoName'
File "/home/luyichen/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 317, in
write_file
data.pop('rlnTomoName')
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 570.133.20
OpenGL renderer: Quadro P4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: xcb
XDG_SESSION_TYPE=wayland
DESKTOP_SESSION=gnome
XDG_SESSION_DESKTOP=gnome
XDG_CURRENT_DESKTOP=GNOME
WAYLAND_DISPLAY=wayland-0
GNOME_SETUP_DISPLAY=:1
DISPLAY=:0
Manufacturer: Dell Inc.
Model: Precision 7920 Tower
OS: CentOS Stream 9
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 Intel(R) Xeon(R) Silver 4110 CPU @ 2.10GHz
Cache Size: 11264 KB
Memory:
total used free shared buff/cache available
Mem: 62Gi 4.9Gi 54Gi 49Mi 3.0Gi 57Gi
Swap: 15Gi 1.1Gi 14Gi
Graphics:
b3:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104GL [Quadro P4000] [10de:1bb1] (rev a1)
Subsystem: Dell Device [1028:11a3]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.8.30
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
distro: 1.9.0
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
pandas: 2.2.3
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pyarrow: 19.0.1
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
starfile: 0.5.12
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (1)
comment:1 by , 6 months ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ArtiaX: save particle list: KeyError: 'rlnTomoName' |
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