Opened 6 months ago
Last modified 6 months ago
#17439 accepted defect
Crash in chem_group on Windows
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Structure Analysis | Version: | |
Keywords: | Cc: | chimera-programmers | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.10.dev202504191902 (2025-04-19 19:02:24 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: access violationWindows fatal exception: access violation Thread 0x000058a8 (most recent call first): Windows fatal exception: File Windows fatal exception: "access violation C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.pyaccess violation" , line 324 in wait File "Windows fatal exception: C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.pyaccess violation" , line 622 in wait Windows fatal exception: File access violation" C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1392 in Windows fatal exception: access violation Windows fatal exception: runaccess violation Windows fatal exception: File access violation "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrapWindows fatal exception: access violation Thread 0x0000876c (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run Windows fatal exception: File access violation" C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000021ac (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00007494 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\connection.py", line 878 in waitWindows fatal exception: access violation File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00006760 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000004e0 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00005920 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00002570 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000084b4 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00008664 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00004e04 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000065e8 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00003410 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00004544 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x000055a4 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00007074 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 975 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 1038 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\threading.py", line 995 in _bootstrap Thread 0x00006140 (most recent call first): File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\chem_group\support.py", line 40 in call_c_plus_plus File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\chem_group\chem_group.py", line 233 in find_group File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\hbonds\hbond.py", line 771 in _find_acceptors File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\hbonds\hbond.py", line 498 in find_hbonds File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\addh\hbond.py", line 259 in add_hydrogens File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\addh\cmd.py", line 184 in hbond_add_hydrogens File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\addh\cmd.py", line 77 in cmd_addh File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\coulombic\coulombic.py", line 95 in assign_charges File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\coulombic\cmd.py", line 102 in cmd_coulombic File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\core\commands\cli.py", line 3219 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\core\commands\run.py", line 49 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 537 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 594 in run_expanded_command File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 72 in func_plus_tip File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 340 in run File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 421 in run_shortcut File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 403 in try_shortcut File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py", line 1394 in run_provider File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\shortcuts\__init__.py", line 66 in run_provider File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py", line 1419 in run_provider File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\core\toolshed\info.py", line 397 in run_provider File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\toolbar\tool.py", line 230 in callback File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init File "C:\Program Files\ChimeraX 1.10.dev202504191902\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.10.dev202504191902 (2025-04-19) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:/Users/KIIT0001/Desktop/DISSERTATION/4qhc_clean.pdb Chain information for 4qhc_clean.pdb #1 --- Chain | Description A | No description available 59 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. Computing secondary structure > show atoms > hide atoms > show cartoons > open > C:/Users/KIIT0001/Desktop/DISSERTATION/RMSD_DOCK/Conformer3D_COMPOUND_CID_129178281_docked.sdf > set bgColor white > show surfaces > set bgColor gray > set bgColor white > view orient > hide #2.3 models > hide #2.2 models > hide #2.1 models > hide #2.9 models > hide #2.8 models > hide #2.7 models > hide #2.6 models > hide #2.5 models > graphics silhouettes true > graphics silhouettes false > lighting flat > undo > hide #2.7 models > hide #2.6 models > hide #2.5 models > lighting full > lighting soft > lighting simple > lighting full > hide #2.4#!1 atoms > show #2.4#!1 atoms > style #2.4#!1 sphere Changed 3996 atom styles > style #2.4#!1 sphere Changed 3996 atom styles > style #2.4#!1 sphere Changed 3996 atom styles > style #2.4#!1 stick Changed 3996 atom styles > style #2.4#!1 ball Changed 3996 atom styles > style #2.4#!1 stick Changed 3996 atom styles > color #2.4#!1 byhetero > color #2.4#!1 bychain > color #2.4#!1 bypolymer > rainbow #2.4#!1 > coulombic #2.4#!1 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10.dev202504191902 (2025-04-19) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 - Build 31.0.101.4255 OpenGL renderer: Intel(R) Iris(R) Xe Graphics OpenGL vendor: Intel Python: 3.11.4 Locale: en_IN.cp1252 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: windows Manufacturer: LENOVO Model: 21DM OS: Microsoft Windows 11 Home Single Language (Build 26100) Memory: 16,874,135,552 MaxProcessMemory: 137,438,953,344 CPU: 12 12th Gen Intel(R) Core(TM) i7-1255U OSLanguage: en-US Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 asttokens: 3.0.0 auditwheel: 6.3.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.3.0 build: 1.2.2.post1 certifi: 2025.1.31 cftime: 1.6.4.post1 charset-normalizer: 3.4.1 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.3 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.5 ChimeraX-AtomicLibrary: 14.1.15 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.dev202504191902 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.1 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.9 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.9 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.10 contourpy: 1.3.2 coverage: 7.8.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.57.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.13.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.6 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.14 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.7 pluggy: 1.5.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.3.5 pytest-cov: 6.1.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pywin32: 310 pyzmq: 26.4.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.13.2 tzdata: 2025.2 urllib3: 2.4.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 WMI: 1.5.1
Change History (1)
comment:1 by , 6 months ago
Cc: | added |
---|---|
Component: | Unassigned → Structure Analysis |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash in chem_group on Windows |
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Despite the fixes I made for #16523, it seems that chem_group can still crash on Windows -- though the frequency now seems less.