![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Apr 9, 2024:
- 5:43 PM Ticket #14943 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 5:32 PM Ticket #14944 (Crash processing mouse event) closed by
- can't reproduce
- 5:08 PM phenix-4-11-24 edited by
- (diff)
- 2:07 PM phenix-4-11-24 edited by
- (diff)
- 1:45 PM Ticket #14944 (Crash processing mouse event) created by
- […]
- 1:21 PM phenix-4-11-24 edited by
- (diff)
- 1:19 PM phenix-4-11-24 edited by
- (diff)
- 11:52 AM phenix-4-11-24 created by
- 11:52 AM Features edited by
- (diff)
- 11:36 AM Ticket #14880 (defattr Attribute File recipient value molecules or structures) closed by
- fixed: Actually, the *code* already supports all the features I outlined, as …
- 10:49 AM Ticket #14941 (chimeraX silhouette look spotty) closed by
- nonchimerax: Unfortunately this is a known problem with one specific old Intel …
- 10:43 AM Ticket #14940 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:39 AM Ticket #14943 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by
- […]
- 10:39 AM Ticket #14942 (MOE docking results) created by
- Hi Eric, Thanks. I have attached a mol2 format file saved from moe …
- 10:27 AM Dev2024-4-15 created by
- 10:26 AM DeveloperMeetings edited by
- (diff)
- 10:25 AM 2024-4-4 edited by
- (diff)
- 10:22 AM 2024-4-11 created by
- 10:21 AM DeveloperMeetings edited by
- (diff)
- 9:30 AM Ticket #14941 (chimeraX silhouette look spotty) created by
- […] Screenshot.png
- 9:08 AM Ticket #14939 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:06 AM Ticket #14940 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by
- […]
- 9:03 AM Ticket #14938 (MemoryError opening mmCIF files) closed by
- duplicate
- 5:34 AM Ticket #14939 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:09 AM Ticket #14938 (MemoryError opening mmCIF files) created by
- […]
Apr 8, 2024:
- 5:41 PM Ticket #14930 (Problem reading .dx map: could not convert string to float: b'attribute') closed by
- can't reproduce: ChimeraX only handles 3d maps in OpenDX format (.dx). The file the …
- 5:13 PM Ticket #14935 (cpuinfo launches new ChimeraX) closed by
- fixed: Fixed. The PyTables version 3.9.2 in its leaf.py runs when it is …
- 5:01 PM Ticket #14926 (EMAN2 HDF5 file: cannot import name '_broken_hdf5_long_double' from ...) closed by
- fixed
- 4:44 PM Ticket #14937 (Crash in python_instances_of_class) closed by
- duplicate
- 4:43 PM Ticket #14936 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') closed by
- duplicate
- 4:41 PM Ticket #14932 (OpenGL error) closed by
- wontfix
- 4:18 PM Dev2024-4-8 edited by
- (diff)
- 3:06 PM Dev2024-4-8 created by
- 3:04 PM DeveloperMeetings edited by
- (diff)
- 2:41 PM Ticket #14937 (Crash in python_instances_of_class) created by
- […]
- 2:34 PM Ticket #14936 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
- 2:14 PM Ticket #14935 (cpuinfo launches new ChimeraX) created by
- […]
- 1:24 PM Ticket #14934 (Daily build "developer cannot be verified") created by
- […]
- 1:13 PM Ticket #14927 (Graphics driver crash) closed by
- can't reproduce
- 12:49 PM Ticket #14933 (ChimeraX GLTF embedded in PowerPoint has bad lighting) created by
- From the March 28, 2024 NIAID ChimeraX meeting: Phil: ChimeraX gltf …
- 12:34 PM Ticket #14929 (Crash in garbage collection) closed by
- duplicate
- 12:26 PM Ticket #14932 (OpenGL error) created by
- […]
- 12:18 PM Ticket #14925 (Crash in garbage collection) closed by
- duplicate: Hi Abhi, Thanks for reporting this problem. We believe it is fixed in …
- 12:15 PM Ticket #14924 (Crash in python_instances_of_class) closed by
- duplicate
- 12:14 PM Ticket #14923 (Crash in garbage collection) closed by
- duplicate
- 12:13 PM Ticket #14922 (Crash in python_instances_of_class) closed by
- duplicate
- 12:11 PM Ticket #14921 (Crash in python_instances_of_class) closed by
- duplicate
- 12:10 PM Ticket #14920 (Crash in garbage collection) closed by
- duplicate
- 12:08 PM ChangeLog edited by
- (diff)
- 12:06 PM Ticket #14919 (Log volume level: local variable 'levels' referenced before assignment) closed by
- duplicate: ChimeraX 0.94!
- 12:05 PM Ticket #14918 (Graphics driver crash) closed by
- can't reproduce
- 11:58 AM Ticket #14913 (AlphaFold: File is not a zip file) closed by
- can't reproduce: Appears that the downloaded results.zip file may have been truncated. …
- 10:45 AM Ticket #14916 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 10:44 AM Ticket #14915 (Crash setting volume level) closed by
- limitation
- 10:26 AM Ticket #14931 (QGLXContext: Failed to create dummy context) created by
- […]
- 9:21 AM Ticket #14930 (Problem reading .dx map: could not convert string to float: b'attribute') created by
- […]
- 7:58 AM Ticket #14929 (Crash in garbage collection) created by
- […]
- 2:37 AM Ticket #14928 (Problem handling SEQCROW job error(?)) created by
- […]
Apr 7, 2024:
- 10:40 PM Ticket #14927 (Graphics driver crash) created by
- […]
- 11:16 AM Ticket #14926 (EMAN2 HDF5 file: cannot import name '_broken_hdf5_long_double' from ...) created by
- […] threed_09.hdf
- 11:10 AM Ticket #14925 (Crash in garbage collection) created by
- […]
- 9:47 AM Ticket #14924 (Crash in python_instances_of_class) created by
- […]
- 9:30 AM Ticket #14923 (Crash in garbage collection) created by
- […]
- 9:24 AM Ticket #14922 (Crash in python_instances_of_class) created by
- […]
- 9:18 AM Ticket #14921 (Crash in python_instances_of_class) created by
- […]
- 7:12 AM Ticket #14920 (Crash in garbage collection) created by
- […]
- 6:54 AM Ticket #14919 (Log volume level: local variable 'levels' referenced before assignment) created by
- […]
- 5:13 AM Ticket #14918 (Graphics driver crash) created by
- […]
- 1:24 AM Ticket #14917 (Angle tool allows decimal places to go to -1) created by
- […]
Apr 6, 2024:
- 4:54 AM Ticket #14916 (KeyError: "No known data format 'mtz'") created by
- […]
- 4:19 AM Ticket #14915 (Crash setting volume level) created by
- […]
Apr 5, 2024:
- 5:42 PM Ticket #14914 (Allow Quest passthrough video for PC VR) created by
- Want to be able to use passthrough video on Quest 3 headsets with …
- 5:35 PM Ticket #14913 (AlphaFold: File is not a zip file) created by
- […]
- 4:17 PM Ticket #10436 (Make VR hand controller button deactivation mode) closed by
- fixed: Done. I added a VR "button lock" button mode. You can assign this …
- 3:36 PM Ticket #14601 (openvr.error_code.CompositorError_TextureUsesUnsupportedFormat) closed by
- can't reproduce: No response from reporter.
- 3:34 PM Ticket #6845 (Adjust VR controller button layout for different controllers) closed by
- wontfix: Meta Quest completely dominates the VR market so I think only their …
- 3:28 PM Ticket #9641 (VR glitches on Nvidia 4070 Ti graphics) closed by
- fixed: We tried disabling Async spacewarp at the NIH BioViz lab during our …
- 3:06 PM Ticket #14912 (SEQCROW failure computing buried volume) created by
- […] double_AlI.log
- 3:01 PM Ticket #14911 (Add H.265 video encoding to the movie encode command) created by
- The movie encode command currently use H.264 video codec by default. …
- 11:56 AM Ticket #14910 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
- 10:50 AM Ticket #14909 (xdg-open of html files on RHEL 9 invokes ChimeraX instead of web browser) created by
- Hello, I encountered an annoying behavior of ChimeraX on Rocky Linux …
- 6:06 AM Ticket #14908 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Apr 4, 2024:
- 7:32 PM Ticket #14907 (Clipper: 'SymmetryManager' object has no attribute 'spacegroup') created by
- […]
- 6:31 PM Ticket #14901 (Problem getting matrix origin while saving map in session) closed by
- fixed: Fixed. Saving a flipped volume in a session was broken by a code …
- 5:25 PM Ticket #14906 (RFE: Start core tools before initializing bundles) closed by
- wontfix: That's a much better idea!
- 4:22 PM Ticket #14879 (Better handling of conflicting defattr registration) closed by
- fixed: Re-registration by defattr now only warns instead of raising an error.
- 4:13 PM Ticket #14906 (RFE: Start core tools before initializing bundles) created by
- By 'core tools' I mean the toolbar, rapid access menu, log, model …
- 3:18 PM Ticket #14905 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:59 PM Ticket #14904 (KeyError: "No known data format 'mtz'") closed by
- can't reproduce: The following daily build had this fixed.
- 2:56 PM Ticket #14902 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Already trying UTF-8/16/32; would need file to determine solution
- 2:38 PM Ticket #14900 (Crash in python_instances_of_class) closed by
- duplicate
- 2:34 PM Ticket #14896 (Crash in closest_atom_by_template reading mmCIF) closed by
- can't reproduce: Need test case.
- 2:32 PM Ticket #14898 (Crash deleting hydrogens) closed by
- can't reproduce: Chuck's next ticket (#14899) seems more tractable to work with, so …
- 12:17 PM Ticket #14904 (KeyError: "No known data format 'mtz'") created by
- […]
- 8:59 AM Ticket #14903 (ChimeraX 1.7.1 Alma8/Alma9 menus not working) created by
- […]
- 7:28 AM Ticket #14902 (UnicodeDecodeError reading PDB file) created by
- […]
- 1:14 AM Ticket #14901 (Problem getting matrix origin while saving map in session) created by
- […]
- 12:20 AM Ticket #14900 (Crash in python_instances_of_class) created by
- […]
Apr 3, 2024:
- 11:01 PM Ticket #14899 (Crash deleting hydrogens) created by
- […]
- 10:54 PM Ticket #14898 (Crash deleting hydrogens) created by
- […]
- 5:35 PM Ticket #14872 (swapaa mousemode assigns -1 serial numbers) closed by
- wontfix: Given there seems to be no problem with atom serial numbers = -1 I'm …
- 5:09 PM Ticket #14897 (fitmap search is assuming local model positions are the same as scene ...) created by
- […]
- 5:06 PM Ticket #14863 (fitmap search variable fitting results) closed by
- fixed: Ok, I added a "seed" option to the fitmap command used only if the …
- 3:07 PM Ticket #14896 (Crash in closest_atom_by_template reading mmCIF) created by
- […]
- 2:38 PM Ticket #14895 (Port measure contactArea command from chimera) closed by
- fixed: Done. Same options and behavior as in Chimera except second surface …
- 2:36 PM Ticket #14895 (Port measure contactArea command from chimera) created by
- On Mar 31, 2024, at 7:59 PM, Krishnan Raman wrote: …
- 1:10 PM Ticket #14893 (error evaluating selector) closed by
- can't reproduce: Tried a few things but couldn't reproduce the selector problem. I …
- 12:01 PM Ticket #14892 (Crash in garbage collection) closed by
- duplicate
- 11:58 AM Ticket #14891 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:55 AM Ticket #14890 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:52 AM Ticket #14889 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:49 AM Ticket #14888 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:48 AM Ticket #14887 ('Sequence' object has no attribute 'structure') closed by
- can't reproduce
- 11:44 AM Ticket #14886 ('Sequence' object has no attribute 'structure') closed by
- can't reproduce: Going to be entirely different in the daily build now that Chains are …
- 11:29 AM Ticket #14883 (KeyError matching selected regions) closed by
- duplicate
- 11:17 AM Ticket #14881 (Crash in garbage collection) closed by
- duplicate
- 10:52 AM Ticket #14894 (ISOLDE: ResidueStepper holding reference to closed structure) created by
- […]
- 10:35 AM Ticket #14878 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 10:24 AM Ticket #14876 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 10:17 AM Ticket #14893 (error evaluating selector) created by
- […]
- 9:58 AM Ticket #14892 (Crash in garbage collection) created by
- […]
- 9:01 AM Ticket #14891 (KeyError: "No known data format 'mtz'") created by
- […]
- 6:29 AM Ticket #14890 (KeyError: "No known data format 'mtz'") created by
- […]
- 5:33 AM Ticket #14889 (KeyError: "No known data format 'mtz'") created by
- […]
- 5:22 AM Ticket #14888 (KeyError: "No known data format 'mtz'") created by
- […]
- 5:21 AM Ticket #14887 ('Sequence' object has no attribute 'structure') created by
- […]
- 5:21 AM Ticket #14886 ('Sequence' object has no attribute 'structure') created by
- […]
- 5:20 AM Ticket #14885 (ISOLDE: No compatible OpenCL platform is available) created by
- […]
- 3:59 AM Ticket #14884 (ISOLDE: crash in "isolde sim") created by
- […]
- 2:14 AM Ticket #14883 (KeyError matching selected regions) created by
- […]
- 1:31 AM Ticket #14882 (Bundle ChimeraX-NMRSTAR has no module) created by
- […]
- 12:29 AM Ticket #14881 (Crash in garbage collection) created by
- […]
Apr 2, 2024:
- 9:45 PM Ticket #14880 (defattr Attribute File recipient value molecules or structures) created by
- […]
- 9:19 PM Ticket #14879 (Better handling of conflicting defattr registration) created by
- […]
- 7:33 PM Ticket #14729 (map_series: model is None) closed by
- duplicate: User closed one volume of a series. I believe the ChimeraX volume …
- 7:30 PM Ticket #14773 (ArrayMemoryError copying buffer when restoring map) closed by
- limitation: Out of memory trying to allocate 892 Mbytes for a volume saved in a …
- 7:28 PM Ticket #14784 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Drawing silhouettes, no back buffer. Probable graphics driver bug.
- 7:27 PM Ticket #14805 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 7:25 PM Ticket #14808 (Crash drawing scene) closed by
- can't reproduce: User opened a map of size 768,256,768 float32, about 500 Mbytes in …
- 7:21 PM Ticket #14811 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 7:19 PM Ticket #14816 (Framebuffer incomplete) closed by
- can't reproduce: Looks like a graphics driver bug.
- 7:17 PM Ticket #14822 (glClearColor: out of memory) closed by
- can't reproduce
- 6:49 PM Ticket #14878 (KeyError: "No known data format 'mtz'") created by
- […]
- 3:23 PM Ticket #14877 (Medical imaging on toolshed) created by
- Our most recent NIAID contract asks us to explore putting ChimeraX's …
- 2:07 PM Ticket #14876 (KeyError: "No known data format 'mtz'") created by
- […]
- 11:43 AM Ticket #14874 (Have PDB-Redo fetch of mtz automatically fetch and associate pdb-redo ...) created by
- […]
- 11:20 AM 2024-4-4 created by
- 11:19 AM Ticket #14873 (Some kind of crash giving a widget focus) closed by
- can't reproduce
- 11:19 AM DeveloperMeetings edited by
- (diff)
- 11:10 AM Ticket #14871 (Crash in event loop) closed by
- can't reproduce: Possibly the user sent an abort signal to ChimeraX.
- 11:07 AM Ticket #14868 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:57 AM Ticket #14873 (Some kind of crash giving a widget focus) created by
- […]
- 10:47 AM Ticket #14867 (PDB-Redo fetch: open_mmcif() got an unexpected keyword argument ...) closed by
- fixed: Usage no longer reports overSampling or structureFactors as legal …
- 9:26 AM Ticket #14869 (KeyError: "No known data format 'mtz'") closed by
- duplicate: Duplicate of #14862
- 9:20 AM Ticket #14866 (Crash using open dialog) closed by
- can't reproduce
- 9:19 AM Ticket #14865 (KeyError: "No known data format 'mtz'") closed by
- duplicate: Duplicate of #14862
- 9:06 AM Ticket #14872 (swapaa mousemode assigns -1 serial numbers) created by
- […]
- 8:59 AM Ticket #14871 (Crash in event loop) created by
- […]
- 7:25 AM Ticket #14870 (New version check: BlockingIOError: [Errno 35] Resource temporarily ...) created by
- […]
- 6:34 AM Ticket #14869 (KeyError: "No known data format 'mtz'") created by
- […]
- 4:53 AM Ticket #14868 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by
- […]
- 12:39 AM Ticket #14850 (perframe / clip front problem) closed by
- not a bug: I guess what you mean is that the clip plane is not positioned where …
Apr 1, 2024:
- 11:46 PM Ticket #14867 (PDB-Redo fetch: open_mmcif() got an unexpected keyword argument ...) created by
- […]
- 11:33 PM Ticket #14866 (Crash using open dialog) created by
- […]
- 8:21 PM Ticket #14815 (volume splitbyzone problems) closed by
- limitation: I see "volume splitbyzone #1" crashed, probably because it ran out of …
- 7:15 PM Ticket #14865 (KeyError: "No known data format 'mtz'") created by
- […]
- 6:40 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) closed by
- fixed: Now that Chain/StructureSeq doesn't demote itself to Sequence, there …
- 6:16 PM Ticket #14864 (RFE: dedicated Z-translation mouse mode) created by
- It is too difficult for some of us to use multiple modifier keys …
- 5:39 PM Ticket #14796 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by
- duplicate: Duplicate of #14787
- 5:32 PM Ticket #14787 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by
- nonchimerax: ChimeraX crashed in the Apple AMD graphics driver. Unfortunately the …
- 5:20 PM Ticket #14770 (Fitmap global search: shift/rotation initializations not always random) closed by
- duplicate: Duplicate of #14863
- 4:54 PM Ticket #14863 (fitmap search variable fitting results) created by
- Roden Luo reports that fitmap search sometimes produces variable …
- 4:47 PM Dev2024-4-1 created by
- 4:33 PM DeveloperMeetings edited by
- (diff)
- 3:19 PM Ticket #14862 (KeyError: "No known data format 'mtz'") created by
- […]
- 1:50 PM Ticket #14861 (Crash changing display configuration) closed by
- can't reproduce
- 1:00 PM Ticket #14763 (glClear: invalid value) closed by
- nonchimerax: I agree with Eric that this looks like a graphics driver problem and …
- 12:29 PM Ticket #14861 (Crash changing display configuration) created by
- […]
- 12:02 PM Ticket #14743 (Unreliable Z translation in mouse mode) closed by
- not a bug: The ctrl key must be pressed after the trackpad click on the Mac to …
- 11:14 AM Ticket #14860 (Crash giving window focus from mouse) closed by
- can't reproduce
- 11:02 AM Ticket #14858 (Crash getting secondary structure IDs after deleting residues) closed by
- can't reproduce: Hi Tim, Thanks for reporting this problem. The information you was …
- 10:48 AM Ticket #14860 (Crash giving window focus from mouse) created by
- […]
- 10:46 AM Ticket #14857 (Crash in python_instances_of_class) closed by
- duplicate
- 10:45 AM Ticket #14856 (Crash using open/save dialog) closed by
- can't reproduce
- 10:39 AM Ticket #14854 (Crash in garbage collection) closed by
- duplicate
- 10:34 AM Ticket #14852 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- duplicate: 1.3
- 10:32 AM Ticket #14851 (Crash in garbage collection) closed by
- duplicate
- 10:16 AM Ticket #14847 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 10:14 AM Ticket #14846 (Crash in event loop) closed by
- can't reproduce
- 1:57 AM Ticket #14859 (Crash handling color swatch favorite) created by
- […]
- 12:47 AM Ticket #14858 (Crash getting secondary structure IDs after deleting residues) created by
- […]
Mar 31, 2024:
- 2:35 PM Ticket #14857 (Crash in python_instances_of_class) created by
- […]
- 12:27 PM Ticket #14856 (Crash using open/save dialog) created by
- […]
- 7:03 AM Ticket #14855 (Error fetching CCD) created by
- […] SCR-20240331-kxzi.png
- 5:05 AM Ticket #14854 (Crash in garbage collection) created by
- […]
Mar 29, 2024:
- 6:14 PM Ticket #14853 (No template for residue type) created by
- […]
- 5:56 PM Ticket #14852 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 2:11 PM Ticket #14851 (Crash in garbage collection) created by
- […]
- 8:31 AM Ticket #14850 (perframe / clip front problem) created by
- […]
- 6:30 AM Ticket #14849 (ViewDockX issue) created by
- […] problem.png
- 4:48 AM Ticket #14848 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by
- […]
- 12:49 AM Ticket #14847 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Mar 28, 2024:
- 11:41 PM Ticket #14846 (Crash in event loop) created by
- […]
- 6:02 PM Ticket #10051 (Add PDB-REDO to fetch by id to get x-ray maps) closed by
- fixed: Fetching the PDB-REDO MTZ maps as well will be tomorrow's daily build. …
- 5:27 PM Ticket #14845 (bundle metadata incorrect) closed by
- limitation: Ah. Well, I am loathe to convert bundle_info.xml to pyproject.toml in …
- 5:08 PM Ticket #14845 (bundle metadata incorrect) created by
- In mmcif/bundle_info.xml I want to define two fetchers For PDB-REDO, …
- 4:26 PM Ticket #14844 (Crash in python_instances_of_class) closed by
- duplicate
- 4:09 PM Ticket #10175 (Toggling rapid access stops plane viewer redrawing) closed by
- fixed: Closing as we now use Qt 6.6.2 and I no longer observe the behavior.
- 2:05 PM NIAID2024 edited by
- (diff)
- 2:00 PM NIAID2024 edited by
- (diff)
- 12:13 PM NIAID2024 edited by
- (diff)
- 12:05 PM NIAID2024 edited by
- (diff)
- 11:20 AM Ticket #14844 (Crash in python_instances_of_class) created by
- […]
- 10:33 AM Ticket #14800 (python_instances_of_class: 'Chain' object has no attribute '_c_pointer_ref') closed by
- duplicate: This is another variant of the python_instances_of_class problem.
- 10:20 AM Ticket #14843 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Amit, Thanks for reporting this problem. This is a bug in the Qt …
- 10:17 AM Ticket #14842 (Crash destroying tool) closed by
- can't reproduce
- 10:12 AM Ticket #14840 (Crash in create_profile) closed by
- can't reproduce: 1.3
- 10:00 AM Ticket #14839 (Crash in garbage collection) closed by
- duplicate
- 8:38 AM Ticket #14843 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:30 AM Ticket #14842 (Crash destroying tool) created by
- […]
- 3:30 AM Ticket #14841 (Qt6WebEngineCore) created by
- […]
- 2:14 AM Ticket #14840 (Crash in create_profile) created by
- […]
Mar 27, 2024:
- 5:53 PM Ticket #14839 (Crash in garbage collection) created by
- […]
- 2:08 PM Ticket #14833 (Unknown problem) closed by
- not a bug: Hi Kama, It is a bug that that message is displayed, but it's a …
- 11:12 AM Ticket #14838 (savepos) closed by
- not a bug: Hi Kamil, "savepos" is a Chimera command, not a ChimeraX command. …
- 9:32 AM Ticket #14838 (savepos) created by
- […]
- 9:16 AM Ticket #14837 (Unknown crash) closed by
- can't reproduce
- 9:07 AM Ticket #14835 (Crash in garbage collection) closed by
- duplicate
- 9:05 AM Ticket #14834 (Access violation in python_instances_of_class) closed by
- duplicate: Adding Tristan to ticket we already have open for this.
- 9:00 AM Ticket #14832 (Access violation in python_instances_of_class) closed by
- duplicate
- 8:58 AM Ticket #14831 (Crash changing display configuration) closed by
- can't reproduce
- 8:55 AM Ticket #14830 (Restoring new session in old ChimeraX) closed by
- limitation: Hi Hanako, Session files are "forwards compatible" -- new versions of …
- 7:55 AM Ticket #14837 (Unknown crash) created by
- […]
- 6:20 AM Ticket #14836 (Residue addition problem) created by
- […]
- 5:07 AM Ticket #14835 (Crash in garbage collection) created by
- […]
- 2:51 AM Ticket #14834 (Access violation in python_instances_of_class) created by
- […]
- 12:47 AM Ticket #14833 (Unknown problem) created by
- […]
Mar 26, 2024:
- 10:43 PM Ticket #14832 (Access violation in python_instances_of_class) created by
- […]
- 8:42 PM Ticket #14831 (Crash changing display configuration) created by
- […]
- 6:21 PM Ticket #14830 (Restoring new session in old ChimeraX) created by
- […]
- 6:07 PM Ticket #14823 (Crash in python_instances_of_class while saving session) closed by
- duplicate: Using #14783 as principal ticket for this problem.
- 6:06 PM Ticket #14790 (Crash in python_instances_of_class) closed by
- duplicate: Using #14783 as principal ticket for this crash. Adding reporter to …
- 6:02 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) reopened by
- 4:44 PM Ticket #14829 (Problem opening pdb file) closed by
- not a bug: Hi George, The first five columns of each line in your file are a …
- 4:37 PM Ticket #14827 (Crash in garbage collection) closed by
- duplicate
- 4:28 PM Ticket #14829 (Problem opening pdb file) created by
- […] [[Image(...)]]
- 2:02 PM Ticket #14804 (Bad IDATM type assignment) closed by
- fixed: Fix: …
- 12:15 PM Ticket #14828 (ISOLDE: ResidueStepper holding reference to closed structure) created by
- […]
- 11:31 AM Ticket #14827 (Crash in garbage collection) created by
- […]
- 10:56 AM Ticket #14826 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:31 AM Ticket #14826 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 9:18 AM Ticket #14825 (Crash as display config changed) closed by
- can't reproduce
- 9:08 AM Ticket #14821 (Qt setting frame origin y to NaN) closed by
- can't reproduce
- 8:22 AM Ticket #14825 (Crash as display config changed) created by
- […]
- 6:22 AM Ticket #14824 (altloc submodel problems) created by
- […]
- 5:47 AM Ticket #14749 (Clipper: not compatible with ChimeraX 1.8) closed by
- fixed: OK, fixed for now (uploaded new Clipper/ISOLDE builds, requiring …
- 1:40 AM Ticket #14810 (Infinite recursion reading REDO mmCIF) closed by
- fixed: Fixed. The switch to using the styling heuristic in the readcif …
- 12:24 AM Ticket #14823 (Crash in python_instances_of_class while saving session) created by
- […]
Mar 25, 2024:
- 7:47 PM Ticket #14822 (glClearColor: out of memory) created by
- […]
- 5:04 PM Ticket #14821 (Qt setting frame origin y to NaN) created by
- […]
- 3:05 PM Ticket #14817 (Keyboard interrupt reading trajectory) closed by
- not a bug: Hi Fernando, I'm guessing you used control-C because the …
- 2:57 PM Ticket #14814 (Crash in event loop) closed by
- can't reproduce
- 2:44 PM Ticket #14813 (Antechamber failure) closed by
- can't reproduce: Hi Maya, Thanks for reporting this problem. I could not reproduce …
- 2:22 PM Ticket #14812 (Crash in event loop) closed by
- can't reproduce
- 2:05 PM Ticket #14809 (Charge failure) closed by
- duplicate
- 9:40 AM Ticket #14820 (glBindBuffer: invalid operation) created by
- […]
- 9:09 AM Ticket #14819 (ARM ChimeraX has Intel Cython lib) created by
- […]
- 7:15 AM Ticket #14818 (ChimeraX 1.8 Ubuntu 22.04 missing dependency) created by
- […]
- 6:25 AM NIAID2024 edited by
- (diff)
- 1:51 AM Ticket #14817 (Keyboard interrupt reading trajectory) created by
- […]
Mar 24, 2024:
- 8:02 PM Ticket #14816 (Framebuffer incomplete) created by
- […]
- 6:52 PM Ticket #14815 (volume splitbyzone problems) created by
- […]
- 6:36 PM Ticket #14814 (Crash in event loop) created by
- […]
- 6:17 PM NIAID2024 created by
- 6:05 PM Ticket #14813 (Antechamber failure) created by
- […] compound9_ligand.mol
- 2:46 PM Ticket #14812 (Crash in event loop) created by
- […]
- 1:01 PM Ticket #14811 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) created by
- […]
- 11:37 AM Ticket #14810 (Infinite recursion reading REDO mmCIF) created by
- […]
- 5:58 AM Ticket #14809 (Charge failure) created by
- […]
Mar 22, 2024:
- 3:22 PM Ticket #14808 (Crash drawing scene) created by
- […]
- 1:34 PM Ticket #14807 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 11:34 AM Ticket #14806 (Crash in garbage collection) closed by
- duplicate: Hi Yuhao, Thanks for reporting this problem. We believe it is fixed …
- 10:44 AM Ticket #14802 (hbonds: wrong number of acc_phi_psi() positional arguments) closed by
- can't reproduce
- 10:33 AM Ticket #14801 (Graphics driver crash / Compositor returned null texture) closed by
- can't reproduce
- 10:02 AM Ticket #14799 (Crash in Clipper: int divide by zero) closed by
- can't reproduce: Very old version
- 9:54 AM Ticket #14798 (hbonds: More than 2 coplanar positions specified) closed by
- can't reproduce: Probable bad structure
- 9:49 AM Ticket #14806 (Crash in garbage collection) created by
- […]
- 9:40 AM Ticket #14797 (~ attribute test) closed by
- not a bug: Hi Ollie, In implementing the "Select" tab in the Render By Attribute …
- 8:58 AM Ticket #14805 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 640) created by
- […]
- 6:58 AM Ticket #14804 (Bad IDATM type assignment) created by
- […]
- 6:41 AM Ticket #14803 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 6:13 AM Ticket #14802 (hbonds: wrong number of acc_phi_psi() positional arguments) created by
- […]
- 6:04 AM Ticket #14801 (Graphics driver crash / Compositor returned null texture) created by
- […]
- 2:34 AM Ticket #14800 (python_instances_of_class: 'Chain' object has no attribute '_c_pointer_ref') created by
- […]
Mar 21, 2024:
- 9:40 PM Ticket #14799 (Crash in Clipper: int divide by zero) created by
- […]
- 5:15 PM Ticket #14798 (hbonds: More than 2 coplanar positions specified) created by
- […]
- 4:07 PM Ticket #14797 (~ attribute test) created by
- […]
- 1:21 PM Ticket #14795 (Read PDB: 'utf-8' codec can't decode byte) closed by
- can't reproduce: Probably need to use some Windows-specific codec, but without an …
- 12:51 PM ChangeLog edited by
- (diff)
- 12:16 PM 2024-3-21 edited by
- (diff)
- 12:00 PM 2024-3-21 edited by
- (diff)
- 11:53 AM 2024-3-21 edited by
- (diff)
- 11:35 AM 2024-3-21 created by
- 11:03 AM DeveloperMeetings edited by
- (diff)
- 10:53 AM Ticket #14794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: remote display?
- 10:49 AM Ticket #14793 (QKeyEvent in drag/drop code) closed by
- can't reproduce: Hi Vincent, Thanks for reporting this problem. This seems to be a …
- 10:34 AM Ticket #14792 (Crash in garbage collection) closed by
- duplicate
- 10:33 AM Ticket #14791 (Crash in garbage collection) closed by
- duplicate
- 3:07 AM Ticket #14796 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by
- […]
- 2:16 AM Ticket #14795 (Read PDB: 'utf-8' codec can't decode byte) created by
- […]
Mar 20, 2024:
- 9:10 PM Ticket #14794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:58 PM Ticket #14793 (QKeyEvent in drag/drop code) created by
- […]
- 6:06 PM Ticket #14792 (Crash in garbage collection) created by
- […]
- 5:51 PM Ticket #14791 (Crash in garbage collection) created by
- […]
- 5:46 PM Ticket #14776 (AlphaFold query sequence problem) closed by
- fixed: Fixed in the daily build. More details in ticket #14777.
- 5:45 PM Ticket #14775 (AlphaFold not running (Invalid character in the sequence)) closed by
- fixed: Fixed in the daily build. More details in ticket #14777.
- 1:25 PM Ticket #14790 (Crash in python_instances_of_class) created by
- […]
- 9:02 AM Ticket #14788 (Crash in garbage collection) closed by
- duplicate
- 8:59 AM Ticket #14786 (Crash showing widget) closed by
- can't reproduce
- 8:57 AM Ticket #14785 (SyntaxError opening map) closed by
- duplicate
- 8:41 AM Ticket #14789 (Unknown crash) created by
- […]
- 7:16 AM Ticket #14788 (Crash in garbage collection) created by
- […]
- 4:52 AM Ticket #14787 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by
- […]
- 12:56 AM Ticket #14786 (Crash showing widget) created by
- […]
Mar 19, 2024:
- 6:18 PM Ticket #14778 (scipy built for MacOS 12) closed by
- limitation: Unfortunately the Mac ARM scipy PyPi distribution requires macOS 12 or …
- 2:27 PM Ticket #14785 (SyntaxError opening map) created by
- […]
- 1:19 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) closed by
- can't reproduce
- 12:10 PM Ticket #14779 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by
- not a bug: If a user installs the .tar.gz version, then they are responsible for …
- 11:24 AM Ticket #14782 (MolecularDynamicsViewer: list index out of range) closed by
- duplicate
- 11:20 AM Ticket #14781 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:33 AM Ticket #14784 (glDrawBuffer: invalid operation) created by
- […]
- 5:52 AM Ticket #14783 (Crash in python_instances_of_class while computing morph) created by
- […]
- 5:32 AM Ticket #14782 (MolecularDynamicsViewer: list index out of range) created by
- […]
- 1:58 AM Ticket #14781 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:30 AM Ticket #14780 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 1:20 AM Ticket #14779 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 12:32 AM Ticket #14778 (scipy built for MacOS 12) created by
- […]
Mar 18, 2024:
- 2:55 PM Ticket #10357 (Phenix water placement: name 'args' is not defined) closed by
- fixed: Fixed in daily build
- 12:51 PM Ticket #10363 ('build peptide' convenience options) closed by
- fixed: After discussion, not implementing strand/helix
Mar 17, 2024:
- 2:48 AM Ticket #14777 (Alphafold prediction: invalid character in the sequence) created by
- ChimeraX Alphafold prediction stopped working I believe on March 14, …
Mar 15, 2024:
- 12:12 PM Ticket #14776 (AlphaFold query sequence problem) created by
- […]
- 10:48 AM Ticket #14768 (Fitmap global search: shift/rotation initializations not always random) closed by
- duplicate: Duplicate of #14770
- 8:07 AM Ticket #14775 (AlphaFold not running (Invalid character in the sequence)) created by
- […] [[Image(...)]]
- 2:32 AM Ticket #14774 (Nucleotide undo after deletion throws traceback) created by
- […]
- 2:06 AM Ticket #14773 (ArrayMemoryError copying buffer when restoring map) created by
- […]
Mar 14, 2024:
- 7:20 PM Ticket #14765 (Missing dynamic libraries) closed by
- wontfix: Those libraries are in …
- 7:12 PM Ticket #14772 (Bundle ChimeraX-NMRSTAR has no module) created by
- […]
- 6:31 PM Ticket #14771 (AlphaFold2 colab notebook error) closed by
- not a bug: Your sequence ends in Q which is not a 1 letter code for the 20 …
- 6:13 PM Ticket #14767 (toolshed install: Non-existent wheel file) closed by
- not a bug: User must be following some recipe where they are supposed to replace …
- 6:08 PM Ticket #14764 (Crash in garbage collection) closed by
- duplicate
- 6:05 PM Ticket #14771 (AlphaFold2 colab notebook error) created by
- […]
- 6:02 PM Ticket #14770 (Fitmap global search: shift/rotation initializations not always random) created by
- Details in https://github.com/RBVI/ChimeraX/issues/40 Reported by …
- 5:45 PM Ticket #14769 (transparency command doesn't work on nucleotide representations) created by
- Unlike the color command, the transparency command has no "target f" …
- 5:04 PM Ticket #14768 (Fitmap global search: shift/rotation initializations not always random) created by
- […] ChimeraX error while submitting feedback.png
- 4:15 PM Ticket #14767 (toolshed install: Non-existent wheel file) created by
- […]
Mar 13, 2024:
- 10:12 PM Ticket #14766 (ChimeraX bug report submission) closed by
- invalid: I did not actually mean to submit this bug report.
- 10:11 PM Ticket #14766 (ChimeraX bug report submission) created by
- […]
- 9:55 PM Ticket #14765 (Missing dynamic libraries) created by
- […]
- 3:19 PM Ticket #14764 (Crash in garbage collection) created by
- […]
- 10:43 AM Ticket #14756 (Help Viewer: No module named 'pyqt') closed by
- fixed: Fixed. Uses qtpy shim for qtpy.sip.
- 9:32 AM Ticket #14742 (Add Hydrogens: Singular matrix) closed by
- not a bug: Hi Xylia, Thanks for supplying the structure. What is it supposed to …
- 8:59 AM Ticket #14762 (Unknown crash) closed by
- can't reproduce
- 8:58 AM Ticket #14760 (Help Viewer: No module named 'pyqt') closed by
- duplicate
- 8:57 AM Ticket #14759 (Help Viewer: No module named 'pyqt') closed by
- duplicate
- 8:55 AM Ticket #14758 (Help Viewer: No module named 'pyqt') closed by
- duplicate
- 8:54 AM Ticket #14757 (Help Viewer: No module named 'pyqt') closed by
- duplicate
- 7:02 AM Ticket #14763 (glClear: invalid value) created by
- […]
- 6:11 AM Ticket #14762 (Unknown crash) created by
- […]
- 3:54 AM Ticket #14761 (Crash opening mmCIF file) created by
- […]
Mar 12, 2024:
- 11:59 PM Ticket #14760 (Help Viewer: No module named 'pyqt') created by
- […]
- 11:59 PM Ticket #14759 (Help Viewer: No module named 'pyqt') created by
- […]
- 11:59 PM Ticket #14758 (Help Viewer: No module named 'pyqt') created by
- […]
- 11:59 PM Ticket #14757 (Help Viewer: No module named 'pyqt') created by
- […]
- 11:59 PM Ticket #14756 (Help Viewer: No module named 'pyqt') created by
- […]
- 8:46 PM Ticket #14755 (tug after session restore: openmm.OpenMMException: Particle coordinate ...) created by
- […]
- 7:41 PM Ticket #14754 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:41 PM Ticket #14753 (Crash in garbage collection) closed by
- duplicate
- 5:40 PM Ticket #14752 (Crash in registration dialog) closed by
- can't reproduce
- 5:23 PM Ticket #9942 (Implement ribbon worms) closed by
- fixed: "Worms" tab in Render By Attribute tool as of tomorrow's build.
- 3:14 PM Ticket #14753 (Crash in garbage collection) created by
- […]
- 2:03 PM Ticket #14752 (Crash in registration dialog) created by
- […]
- 12:29 PM ChangeLog edited by
- (diff)
- 11:21 AM Ticket #14751 (Crash handling text input) closed by
- can't reproduce
- 11:20 AM Ticket #14750 (Bad/non-SDF file) closed by
- not a bug
- 9:55 AM Ticket #14747 (sqm failure) closed by
- can't reproduce: sqm was not rerun because "No convergence in SCF" was not in the …
- 9:40 AM Ticket #14746 (How "name" works) closed by
- not a bug: Hi Oli, The basic form of the "name" command remembers the spec you …
- 9:29 AM Ticket #14745 (Crash in Open→File dialog) closed by
- can't reproduce
- 8:55 AM Ticket #14751 (Crash handling text input) created by
- […]
- 7:02 AM Ticket #14750 (Bad/non-SDF file) created by
- […]
- 6:18 AM Ticket #14749 (Clipper: not compatible with ChimeraX 1.8) created by
- […]
- 4:02 AM Ticket #14748 (ISOLDE: There is no registered Platform called "OpenCL") created by
- […]
Mar 11, 2024:
- 5:55 PM Ticket #14747 (sqm failure) created by
- […]
- 4:45 PM Ticket #14746 (How "name" works) created by
- […]
- 3:32 PM Ticket #14745 (Crash in Open→File dialog) created by
- […]
- 11:52 AM Ticket #14744 (Crash in garbage collection) closed by
- duplicate
- 11:37 AM Ticket #14741 (Crash in python_instances_of_class) closed by
- can't reproduce: User was clicking a check button when this happened, but not much to …
- 11:23 AM Ticket #14739 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:21 AM Ticket #14738 (Crash in garbage collection) closed by
- duplicate: Hi Jan, Thanks for reporting this problem. We believe it is fixed in …
- 11:16 AM Ticket #14737 (Dead model in session.selection) closed by
- duplicate: Should be fixed by the same fix as #10047
- 11:11 AM Ticket #14736 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 11:07 AM Ticket #14735 (Crash in garbage collection) closed by
- duplicate
- 11:04 AM Ticket #14734 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 10:46 AM Ticket #14744 (Crash in garbage collection) created by
- […]
- 10:36 AM Ticket #14730 (Crash using Open dialog) closed by
- can't reproduce
- 9:19 AM Ticket #14743 (Unreliable Z translation in mouse mode) created by
- […]
- 7:30 AM Ticket #14742 (Add Hydrogens: Singular matrix) created by
- […]
- 4:12 AM Ticket #14741 (Crash in python_instances_of_class) created by
- […]
- 3:11 AM Ticket #14740 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 3:02 AM Ticket #14739 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:42 AM Ticket #14738 (Crash in garbage collection) created by
- […]
Mar 9, 2024:
- 10:01 PM Ticket #14737 (Dead model in session.selection) created by
- […]
- 9:10 PM Ticket #14736 (Crash showing Rapid Access at startup) created by
- […]
- 6:42 PM Ticket #14735 (Crash in garbage collection) created by
- […]
- 12:56 PM Ticket #14734 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
