Histogram widget: operands could not be broadcast together with shapes

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/PDB
> structures/7aln.pdb" format pdb

7aln.pdb title:  
Cryo-em structure of the divergent actomyosin complex from plasmodium
falciparum myosin A In the rigor state [more info...]  
  
Chain information for 7aln.pdb #1  
---  
Chain | Description | UniProt  
A B C D E | actin I | ACT1_PLAF7 1-376  
F | PFM-A | MYOA_PLAF7 1-818  
  
Non-standard residues in 7aln.pdb #1  
---  
9UE — jasplakinolide  
ADP — adenosine-5'-diphosphate  
MG — magnesium ion  
  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/PDB
> structures/7aln.pdb" format pdb

7aln.pdb title:  
Cryo-em structure of the divergent actomyosin complex from plasmodium
falciparum myosin A In the rigor state [more info...]  
  
Chain information for 7aln.pdb #2  
---  
Chain | Description | UniProt  
A B C D E | actin I | ACT1_PLAF7 1-376  
F | PFM-A | MYOA_PLAF7 1-818  
  
Non-standard residues in 7aln.pdb #2  
---  
9UE — jasplakinolide  
ADP — adenosine-5'-diphosphate  
MG — magnesium ion  
  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/Sequence
> Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln"

Summary of feedback from opening /Users/rowan/Documents/Desktop
ORGANIZE!!/UCSB/Hanein Group/Sequence
Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  
---  
notes | Alignment identifier is
CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  
Showing conservation header ("seq_conservation" residue attribute) for
alignment CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  
  
Opened 8 sequences from CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  

> align

Missing or invalid "atoms" argument: empty atom specifier  

> sequence associate #1/F
> CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:5

Associated 7aln.pdb chain F to sp|P12883| with 654 mismatches and/or gaps  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/Sequence
> Alignments/YHF90378212-alignment.aln"

Summary of feedback from opening /Users/rowan/Documents/Desktop
ORGANIZE!!/UCSB/Hanein Group/Sequence Alignments/YHF90378212-alignment.aln  
---  
notes | Alignment identifier is YHF90378212-alignment.aln  
Associated 7aln.pdb chain F to sp|Q8IDR3| with 1 mismatch  
Associated 7aln.pdb chain F to sp|Q8IDR3| with 1 mismatch  
Showing conservation header ("seq_conservation" residue attribute) for
alignment YHF90378212-alignment.aln  
  
Opened 3 sequences from YHF90378212-alignment.aln  

> sequence associate #1/F YHF90378212-alignment.aln:2

Disassociated 7aln.pdb chain F from sp|Q8IDR3|  
Associated 7aln.pdb chain F to sp|P13533| with 647 mismatches and/or gaps  

> sequence associate #1/F YHF90378212-alignment.aln:3

Disassociated 7aln.pdb chain F from sp|P13533|  
Associated 7aln.pdb chain F to sp|P12883| with 654 mismatches and/or gaps  

> sequence header CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln
> conservation setting style "Clustal characters"

[Repeated 1 time(s)]

> sequence header CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln
> conservation setting style "identity histogram"

[Repeated 1 time(s)]

> ui tool show "Render By Attribute"

> close #2

> ui tool show "Render By Attribute"

> color byattribute r:seq_conservation #!1 target abcs palette
> 0.333333,blue:0.666667,white:1,red

20789 atoms, 2629 residues, atom seq_conservation range 0.333 to 1  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:1

Disassociated 7aln.pdb chain F from sp|P12883|  
Associated 7aln.pdb chain F to sp|P13533| with 647 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:2

Disassociated 7aln.pdb chain F from sp|P13533|  
Associated 7aln.pdb chain F to sp|Q02566| with 658 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:3

Disassociated 7aln.pdb chain F from sp|Q02566|  
Associated 7aln.pdb chain F to sp|P02563| with 655 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:4

Disassociated 7aln.pdb chain F from sp|P02563|  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:4

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:5

Associated 7aln.pdb chain F to sp|P12883| with 654 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:6

Disassociated 7aln.pdb chain F from sp|P12883|  
Associated 7aln.pdb chain F to sp|Q91Z83| with 641 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:7

Disassociated 7aln.pdb chain F from sp|Q91Z83|  
Associated 7aln.pdb chain F to sp|P02564| with 642 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:8

Disassociated 7aln.pdb chain F from sp|P02564|  
Associated 7aln.pdb chain F to sp|P04461| with 641 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:5

Disassociated 7aln.pdb chain F from sp|P04461|  
Associated 7aln.pdb chain F to sp|P12883| with 654 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln:1

Disassociated 7aln.pdb chain F from sp|P12883|  
Associated 7aln.pdb chain F to sp|P13533| with 647 mismatches and/or gaps  

> sequence refseq :sp|P13533|

> ui tool show "Render By Attribute"

> color byattribute r:seq_conservation #!1 target abcs palette
> 0.333333,#7fc97f:0.666667,#beaed4:1,#fdc086

20789 atoms, 2629 residues, atom seq_conservation range 0.333 to 1  

> key accent-3 :0.33 :0.67 :1.00 showTool true

> ui mousemode right "color key"

> key delete

> ui mousemode right translate

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 756, in _set_value_cb  
self._redraw_cb()  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 646, in _redraw_cb  
self._bins = left + filled_bins + right  
ValueError: operands could not be broadcast together with shapes (100,) (201,)  
  
ValueError: operands could not be broadcast together with shapes (100,) (201,)  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 646, in _redraw_cb  
self._bins = left + filled_bins + right  
  
See log for complete Python traceback.  
  

> color byattribute r:seq_conservation #!1 target abcs palette
> 0,#7fc97f:0.5,#beaed4:1,#fdc086

20789 atoms, 2629 residues, atom seq_conservation range 0.333 to 1  

> undo

> select /F:146

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /F:140

12 atoms, 12 bonds, 1 residue, 1 model selected  

> select
> /F:104,106-110,112,115-116,119,122-125,129-134,136-137,142,144-148,150-153,157-163,167,169-173,175-184,186,188-190,199-200,203-206,211,213-216,218-219,230,240,243,250,252-259,261-270,277,279,281-283,286,293,295,436,439,443,445,447-451,453-455,457-463,465,467,471,475,477-478,481,485,488,492,495-496,498-501,503-504,506-508,511,515-530,532,535-539,541,544-545,547-548,550-551,554-555,557,560,627-632,635-637,639-641,644,646-648,650-651,654-658,660,664,668,672,674,678-679,681

1626 atoms, 1569 bonds, 207 residues, 1 model selected  

> select clear

> select /F:139

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /F:221

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /F:211

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select

20789 atoms, 21219 bonds, 14 pseudobonds, 2629 residues, 3 models selected  

> select

20789 atoms, 21219 bonds, 14 pseudobonds, 2629 residues, 3 models selected  

> select

20789 atoms, 21219 bonds, 14 pseudobonds, 2629 residues, 3 models selected  

> select /F:104

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /F:105

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /F:111

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /F:114

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /F:116

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select /F:123

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select

20789 atoms, 21219 bonds, 14 pseudobonds, 2629 residues, 3 models selected  

> select

20789 atoms, 21219 bonds, 14 pseudobonds, 2629 residues, 3 models selected  

> select /F:211

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /F:251

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select

20789 atoms, 21219 bonds, 14 pseudobonds, 2629 residues, 3 models selected  

> select /F:293-294

19 atoms, 19 bonds, 2 residues, 1 model selected  

> select /F:293-294

19 atoms, 19 bonds, 2 residues, 1 model selected  

> select /F:294

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /F:294

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select clear

> show cartoons

> hide surfaces

> hide atoms

> select /F:286

6 atoms, 5 bonds, 1 residue, 1 model selected  

> ui tool show "Show Sequence Viewer"

> sequence chain /F

Alignment identifier is 1/F  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/Sequence
> Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln"

Summary of feedback from opening /Users/rowan/Documents/Desktop
ORGANIZE!!/UCSB/Hanein Group/Sequence
Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  
---  
notes | Alignment identifier is
CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  
Showing conservation header ("seq_conservation" residue attribute) for
alignment CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  
  
Opened 8 sequences from CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit.aln  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/Sequence
> Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit_7ALN.aln"

Summary of feedback from opening /Users/rowan/Documents/Desktop
ORGANIZE!!/UCSB/Hanein Group/Sequence
Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit_7ALN.aln  
---  
notes | Alignment identifier is
CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit_7ALN.aln  
Associated 7aln.pdb chain A to sp|Q8I4X0| with 0 mismatches  
Associated 7aln.pdb chain B to sp|Q8I4X0| with 0 mismatches  
Associated 7aln.pdb chain C to sp|Q8I4X0| with 0 mismatches  
Associated 7aln.pdb chain D to sp|Q8I4X0| with 0 mismatches  
Associated 7aln.pdb chain E to sp|Q8I4X0| with 0 mismatches  
Showing conservation header ("seq_conservation" residue attribute) for
alignment CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit_7ALN.aln  
  
Opened 9 sequences from
CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit_7ALN.aln  

> sequence associate /F
> CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_Rabbit_7ALN.aln:9

Associated 7aln.pdb chain F to sp|Q8I4X0| with 367 mismatches and/or gaps  

> open "/Users/rowan/Documents/Desktop ORGANIZE!!/UCSB/Hanein Group/Sequence
> Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln"

Summary of feedback from opening /Users/rowan/Documents/Desktop
ORGANIZE!!/UCSB/Hanein Group/Sequence
Alignments/CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln  
---  
notes | Alignment identifier is
CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln  
Associated 7aln.pdb chain F to sp|Q8IDR3.1| with 1 mismatch  
Showing conservation header ("seq_conservation" residue attribute) for
alignment CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln  
  
Opened 7 sequences from CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln  

> sequence align CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln program
> clustalOmega

Alignment identifier is 1  
Associated 7aln.pdb chain F to sp|Q8IDR3.1| with 1 mismatch  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Webservices job id: WJLOULSP53OL99T0  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:1

Disassociated 7aln.pdb chain F from sp|Q8IDR3.1|  
Associated 7aln.pdb chain F to sp|P13533.5| with 647 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:2

Disassociated 7aln.pdb chain F from sp|P13533.5|  
Associated 7aln.pdb chain F to sp|Q02566.2| with 658 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:3

Disassociated 7aln.pdb chain F from sp|Q02566.2|  
Associated 7aln.pdb chain F to sp|P02563.2| with 655 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:4

Disassociated 7aln.pdb chain F from sp|P02563.2|  
Associated 7aln.pdb chain F to sp|P12883.5| with 654 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:5

Disassociated 7aln.pdb chain F from sp|P12883.5|  
Associated 7aln.pdb chain F to sp|Q91Z83.1| with 641 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:6

Disassociated 7aln.pdb chain F from sp|Q91Z83.1|  
Associated 7aln.pdb chain F to sp|P02564.2| with 642 mismatches and/or gaps  

> sequence associate /F CardiacHC_Myosin_Isoforms_Human_Mouse_Rat_7ALN.aln:7

Disassociated 7aln.pdb chain F from sp|P02564.2|  
Associated 7aln.pdb chain F to sp|Q8IDR3.1| with 1 mismatch  

> ui tool show "Render By Attribute"

> key accent-3 :0.14 :0.57 :1.00 showTool true

> ui mousemode right "color key"

> key accent-3 : :0.57 :1.00

> key accent-3 :0 :0.57 :1.00

> key accent-3 :0. :0.57 :1.00

> key accent-3 :0.1 :0.57 :1.00

> key accent-3 :0.14 :0.57 :1.00

> ui mousemode right translate

> color byattribute r:seq_conservation #!1 target abcs palette
> 0.142857,#7fc97f:0.571429,#beaed4:1,#fdc086

20789 atoms, 2629 residues, atom seq_conservation range 0.143 to 1  

> undo

> select /F

6058 atoms, 6164 bonds, 1 pseudobond, 766 residues, 2 models selected  

> ui tool show "Render By Attribute"

> key accent-3 :0.14 :0.57 :1.00 showTool true

> ui mousemode right "color key"

> ui mousemode right translate

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.571429,#beaed4:1,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.571429,#beaed4:1,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> ui mousemode right select

> select clear

> show cartoons

> show atoms

> hide cartoons

> select clear

> select /F:673@C

1 atom, 1 residue, 1 model selected  

> select /F:81@OD2

1 atom, 1 residue, 1 model selected  

> select clear

[Repeated 1 time(s)]

> ui tool show "Render By Attribute"

> color byattribute r:seq_conservation #!1 target abcs palette
> 0.285714,#7fc97f:0.571429,#beaed4:1,#fdc086

20789 atoms, 2629 residues, atom seq_conservation range 0.143 to 1  

> undo

> select /F

6058 atoms, 6164 bonds, 1 pseudobond, 766 residues, 2 models selected  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.285714,#7fc97f:0.571429,#beaed4:1,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.337446,#7fc97f:0.571429,#beaed4:1,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> undo

> ui tool show "Render By Attribute"

> color byattribute r:seq_conservation #!1 target abcs palette
> 0.285714,#7fc97f:0.428571,#beaed4:0.857143,#fdc086

20789 atoms, 2629 residues, atom seq_conservation range 0.143 to 1  

> undo

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.285714,#7fc97f:0.428571,#beaed4:0.857143,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.285714,#beaed4:0.428571,#fdc086:0.857143,#ffff99

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#a6611a:0.285714,#dfc27d:0.428571,#80cdc1:0.857143,#018571

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#ffff99:0.285714,#fdc086:0.428571,#beaed4:0.857143,#7fc97f

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.285714,#beaed4:0.428571,#fdc086:0.571429,#ffff99:0.714286,#386cb0:0.857143,#f0027f:1,#bf5b17

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.428571,#fdc086:0.714286,#386cb0:1,#bf5b17

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> undo

[Repeated 1 time(s)]

> redo

> undo

> redo

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.285714,#fdc086:0.5,#386cb0:0.857143,#bf5b17

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.285714,#beaed4:0.5,#fdc086:0.857143,#ffff99

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> undo

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#a6cee3:0.285714,#1f78b4:0.5,#b2df8a:0.857143,#33a02c

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#f6eff7:0.285714,#bdc9e1:0.5,#67a9cf:0.857143,#02818a

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#fee5d9:0.285714,#fcae91:0.5,#fb6a4a:0.857143,#cb181d

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#ffffcc:0.285714,#c2e699:0.5,#78c679:0.857143,#238443

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#7fc97f:0.285714,#beaed4:0.5,#fdc086:0.857143,#ffff99

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#e8fff2:0.285714,#7fc97f:0.928571,#beaed4:0.999525,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#838388:0.285714,#7fc97f:0.928571,#beaed4:0.999525,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#aa7942:0.285714,#7fc97f:0.928571,#beaed4:0.999525,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#fffb00:0.285714,#7fc97f:0.928571,#beaed4:0.999525,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  

> color byattribute r:seq_conservation #!1 & sel target abcs palette
> 0.142857,#fefb9a:0.285714,#7fc97f:0.928571,#beaed4:0.999525,#fdc086

6058 atoms, 766 residues, atom seq_conservation range 0.143 to 1  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 756, in _set_value_cb  
self._redraw_cb()  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 646, in _redraw_cb  
self._bins = left + filled_bins + right  
ValueError: operands could not be broadcast together with shapes (0,) (301,)  
  
ValueError: operands could not be broadcast together with shapes (0,) (301,)  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 646, in _redraw_cb  
self._bins = left + filled_bins + right  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 179, in <lambda>  
if event.modifiers() & mod_key_info("shift")[0] else
self._select_marker_cb(event)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 714, in _select_marker_cb  
self._set_sel_marker(marker, drag_start=event)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 743, in _set_sel_marker  
self._last_mouse_xy = self._abs_xy((drag_start.scenePos().x(),
drag_start.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-22.1.27
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,4
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 1.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      System Firmware Version: 2020.0.1.0.0 (iBridge: 21.16.365.0.0,0)
      OS Loader Version: 580~439

Software:

    System Software Overview:

      System Version: macOS 14.0 (23A344)
      Kernel Version: Darwin 23.0.0
      Time since boot: 2 days, 1 hour, 46 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 645:

      Chipset Model: Intel Iris Plus Graphics 645
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea6
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0