Timeline



Oct 17, 2023:

2:01 PM Ticket #10009 (ValueError: error processing: 'tasks' -> : Unable to restore objects ...) created by chimerax-bug-report@…
[…]
1:38 PM Ticket #10001 (Clip plane motion problem) closed by Tom Goddard
fixed
1:38 PM Ticket #10001 (Clip plane motion problem) reopened by Tom Goddard
Fixed. Thanks for the detailed steps. The rotation between the two …
1:27 PM Ticket #10008 (Reading PDB file: UnicodeDecodeError: 'utf-8' codec can't decode byte ...) created by chimerax-bug-report@…
[…]
1:14 PM Ticket #10007 (Session files get larger on each save) created by drorn@…
[…] LH2 5HB for design.cxs
12:57 PM Ticket #10006 (Crash in Qt event loop after opening AlphaFold model, Linux possible ...) created by chimerax-bug-report@…
[…]
12:51 PM Dev2023-10-23 created by Tom Goddard
12:50 PM 2023-10-19 created by Tom Goddard
12:48 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:24 PM Ticket #10003 (Give better error message when AlphaFold prediction download fails) closed by Tom Goddard
fixed: Done. Gave error message suggesting how to recover the results.zip file.
12:22 PM Ticket #10005 (Render by attribute: TypeError: object of type 'function' has no len()) closed by Tom Goddard
duplicate
12:20 PM Ticket #9984 (Render by attribute histogram error: TypeError: object of type ...) closed by Tom Goddard
duplicate: Fixed 3 months ago #9328
12:10 PM Ticket #10002 (Crash in QTabBar::paintEvent(QPaintEvent*)) closed by Tom Goddard
duplicate
12:09 PM Ticket #10001 (Clip plane motion problem) closed by Tom Goddard
worksforme: I set the near plane with the side view, then "view name p1", then …
12:02 PM Ticket #10005 (Render by attribute: TypeError: object of type 'function' has no len()) created by zehr.elena@…
[…]
12:02 PM Ticket #10000 (Clip planes don't move smoothly between named views) closed by Tom Goddard
worksforme: Elaine, maybe it is worth adding to the documentation that when …
11:42 AM Ticket #10004 (Reading SDF file: atoms[index].charge = charge IndexError: list ...) created by rsepela@…
[…] rank1_confidence-0.69.sdf
11:39 AM Ticket #10003 (Give better error message when AlphaFold prediction download fails) created by goddard@…
[…]
12:48 AM Ticket #9557 (Registration server unavailable) closed by Greg Couch
can't reproduce: My guess is that this is an issue with the NIH's firewall. Or maybe a …
12:22 AM Ticket #9178 (Accepting a new Toolshed bundle appears to hang with circling arrows icon) closed by Greg Couch
fixed: Bug was due to incomplete switch to Django 4. Replaced …
12:19 AM Ticket #8815 (mmCIF reading causing "not enough memory" error) closed by Greg Couch
fixed: There was a memory leak in the code that read CIF tables as text …
12:15 AM Ticket #8827 (Out of memory after opening small mmCIF 7phr on Mac. Also ssl ...) closed by Greg Couch
duplicate: The out of memory bug is a duplicate of #8815 and is fixed in the …

Oct 16, 2023:

10:53 PM Ticket #10002 (Crash in QTabBar::paintEvent(QPaintEvent*)) created by chimerax-bug-report@…
[…]
4:27 PM Dev2023-10-16 edited by Tom Goddard
(diff)
4:21 PM Ticket #8818 (Read mmCIF: not enough memory) closed by Greg Couch
duplicate: We believe this bug the same as #8815 and is fixed in the daily build.
3:41 PM ChangeLog edited by Elaine Meng
(diff)
2:06 PM Ticket #10001 (Clip plane motion problem) created by rpeng@…
[…]
1:57 PM Ticket #10000 (Clip planes don't move smoothly between named views) created by rpeng@…
[…]
1:08 PM Ticket #9999 (BlastProtein returns more results than the 100 maximum requested) created by goddard@…
[…]
11:54 AM Ticket #9991 (ChimeraX hangs saving file on macOS Sonoma) closed by Tom Goddard
duplicate: Reporter provided more details in #9994.
11:51 AM Ticket #9998 (AlphFold Error Plot: TypeError: expected str, bytes or os.PathLike ...) closed by Tom Goddard
fixed: Fixed. The AlphaFold Error Plot Browse button was trying to set the …
11:45 AM Ticket #9997 (Crashed in QTabBar::paintEvent()) closed by Tom Goddard
duplicate
11:40 AM Ticket #9996 (view command not doing smooth zoom) closed by Tom Goddard
not a bug
11:26 AM Ticket #9992 (ChimeraX bug report submission) closed by Tom Goddard
nonchimerax
11:15 AM Ticket #9989 (Movie recording failed: OSError: [Errno 28] No space left on device) closed by Tom Goddard
nonchimerax
11:12 AM Ticket #9988 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax
11:11 AM Ticket #9987 (ChimeraX bug report submission) closed by Tom Goddard
not a bug
11:06 AM Ticket #9986 (Render by attribute: TypeError: object of type 'function' has no len()) closed by Tom Goddard
duplicate: Same report as #9984.
10:56 AM Ticket #9998 (AlphFold Error Plot: TypeError: expected str, bytes or os.PathLike ...) created by goddard@…
[…]
9:16 AM Ticket #9997 (Crashed in QTabBar::paintEvent()) created by pkoduro@…
[…]
8:26 AM Ticket #9996 (view command not doing smooth zoom) created by rpeng@…
[…]
7:23 AM Ticket #9995 (TOML documentation out of date) created by Tristan Croll
[…]
6:50 AM Ticket #9994 (ChimeraX hangs saving a session, macOS Sonoma) created by maf95@…
[…]
12:30 AM Ticket #9993 (Crash in coulombic in assign_charges()) created by chimerax-bug-report@…
[…]

Oct 15, 2023:

8:30 PM Ticket #9992 (ChimeraX bug report submission) created by kytimmons@…
[…]
12:43 PM Ticket #9991 (ChimeraX hangs saving file on macOS Sonoma) created by maf95@…
[…]
12:41 PM Ticket #9990 (Error opening zero-length session file in DropBox) created by lp212@…
[…]
5:23 AM Ticket #9989 (Movie recording failed: OSError: [Errno 28] No space left on device) created by chimerax-bug-report@…
[…]
4:19 AM Ticket #9988 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]

Oct 14, 2023:

11:17 PM Ticket #9987 (ChimeraX bug report submission) created by huaixu2@…
[…]
10:30 AM Ticket #9986 (Render by attribute: TypeError: object of type 'function' has no len()) created by chimerax-bug-report@…
[…]
10:26 AM Ticket #9985 (Computing sequence conservation: OSError: [Errno 12] Cannot allocate memory) created by francisco.murphy@…
[…]
10:16 AM Ticket #9984 (Render by attribute histogram error: TypeError: object of type ...) created by chimerax-bug-report@…
[…]
9:43 AM Ticket #9983 (ISOLDE: openmm.OpenMMException: Error initializing context: ...) created by chimerax-bug-report@…
[…]

Oct 13, 2023:

11:16 PM 2023-10-12 edited by Tom Goddard
(diff)
2:12 PM Ticket #9597 (Antechamber doesn't like blank residue name) closed by pett
fixed: The residue name isn't "0" -- the residue name is blank. The residue …
12:41 PM Ticket #9977 (Didn't find section 'Peptide bond' in tab 'ISOLDE') closed by Tristan Croll
not a bug: This is why, at the end of installation, ISOLDE pops up a dialog …
12:29 PM Ticket #9981 (Graphics crash, macOS 14.0, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax
11:47 AM Ticket #9982 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:39 AM Ticket #9979 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:38 AM Ticket #9978 (QXcbConnection: XCB error: 9 (BadDrawable)) closed by pett
can't reproduce: Version 0.91
11:20 AM Ticket #9982 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
11:02 AM Ticket #9974 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:50 AM Ticket #9981 (Graphics crash, macOS 14.0, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
10:32 AM Ticket #9980 (ChimeraX will not start on Mac Studio 2022 in Sonoma) created by martin.hallberg@…
[…]
7:07 AM Ticket #9979 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
3:59 AM Ticket #9978 (QXcbConnection: XCB error: 9 (BadDrawable)) created by chimerax-bug-report@…
[…]
2:49 AM Ticket #9977 (Didn't find section 'Peptide bond' in tab 'ISOLDE') created by chimerax-bug-report@…
[…]

Oct 12, 2023:

7:31 PM Ticket #9976 (Fetching PDB biounit shows error in status line) closed by Tom Goddard
fixed: Fixed. As suspected, ChimeraX does not know how many bioassemblies …
7:23 PM Ticket #9976 (Fetching PDB biounit shows error in status line) created by meng@…
[…]
7:19 PM Ticket #9971 (AlphaFold error plot: Operation not permitted) closed by Tom Goddard
limitation: User didn't have permission to list files in a mail download directory …
7:17 PM Ticket #9972 (Graphics crash, macOS 14.0, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
6:52 PM Ticket #9975 (ISOLDE sim start: OpenMMException: Error compiling kernel: Compile ...) created by yangxl@…
[…]
3:14 PM Ticket #9974 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:43 PM ChangeLog edited by pett
(diff)
2:42 PM ChangeLog edited by pett
(diff)
2:06 PM Ticket #9970 (Crash using open/save dialog) closed by pett
can't reproduce
2:05 PM Ticket #9969 (Crash using open/save dialog) closed by pett
can't reproduce
10:06 AM Ticket #8913 (Crash showing Rapid Access at startup) closed by Greg Couch
worksforme
9:56 AM NIAID2023 edited by Elaine Meng
(diff)
9:43 AM Ticket #9973 (Models panel automatically resizes column widths when it shouldn't) created by goddard@…
[…]
9:16 AM Ticket #9972 (Graphics crash, macOS 14.0, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
8:31 AM Ticket #9971 (AlphaFold error plot: Operation not permitted) created by chimerax-bug-report@…
[…]
3:58 AM Ticket #9970 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
3:44 AM Ticket #9969 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]

Oct 11, 2023:

5:59 PM Ticket #9946 (SwissDock: chlorines treated as carbons) closed by pett
fixed: Fixed. The fix will be in the next daily build. Fix: …
5:50 PM Ticket #9966 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
5:06 PM Ticket #9968 (Save image of sequence/alignment) created by anasofia.ferreiraramos@…
Save an image or possibly an SVG of a sequence/alignment
12:57 PM Ticket #9967 (3D segmentation cursor doesn't always spawn near the 3D model) created by Zach Pearson
The 3D segmentation cursor always starts at (0,0,0), but 3D models of …
12:22 PM Ticket #9945 (QThread: Destroyed while thread is still running) closed by Zach Pearson
duplicate: Same as #9956
12:22 PM Ticket #9728 (DICOM: QThread: Destroyed while thread is still running) closed by Zach Pearson
duplicate: Same as #9956
12:16 PM Ticket #9966 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
11:58 AM Ticket #9801 (LookSee meeting file transfer very slow, 20 seconds) closed by Tom Goddard
fixed: Using GZipStream took 2.3 seconds to compress 22 Mbytes which would …
11:47 AM Ticket #9962 (Syntax error reading marker file) closed by Tom Goddard
can't reproduce: Bad marker file, maybe it is empty (syntax error at column 0 of line …
11:46 AM Ticket #9965 (Segmentations opened from files give traceback on edit) created by Zach Pearson
11:43 AM Ticket #9955 (Movie creation: No space left on device) closed by Tom Goddard
nonchimerax: No disk space when encoding movie. Error writing trailer of …
11:40 AM Ticket #9953 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:54 AM Ticket #9956 (Download Dicom tool: QThread: Destroyed while thread is still running) closed by Zach Pearson
fixed: OK, starting another thread while the previous one is active should be …
10:41 AM Ticket #9964 (TCIA 1.3.6.1.4.1.14519.5.2.1.234132074440664539509159575625111026305 ...) created by Zach Pearson
10:38 AM Ticket #9961 (Crash at startup) closed by Greg Couch
limitation: Hello, it looks like you are trying to run ChimeraX remotely. …
9:31 AM Ticket #9963 (ChargeError during dockprep) closed by pett
duplicate
9:22 AM Ticket #9959 (Session restore: invalid load key) closed by pett
duplicate: Restoring new session in old ChimeraX
9:20 AM Ticket #9958 (MemoryError opening mmCIF files) closed by pett
duplicate
9:19 AM Ticket #9957 (Crash in QTabBar::paintEvent) closed by pett
duplicate
9:19 AM Ticket #9963 (ChargeError during dockprep) created by chimerax-bug-report@…
[…]
9:15 AM Ticket #9954 (MemoryError opening mmCIF files) closed by pett
duplicate
9:09 AM Ticket #9952 (MemoryError opening mmCIF files) closed by pett
duplicate
9:06 AM Ticket #9951 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Huixia, Thanks for reporting this problem. This is a bug in the Qt …
8:39 AM Ticket #9962 (Syntax error reading marker file) created by chimerax-bug-report@…
[…]
8:07 AM Ticket #9961 (Crash at startup) created by vincenzo.martorana@…
[…]
3:56 AM Ticket #9960 (ChargeError during dockprep) created by chimerax-bug-report@…
[…]
3:10 AM Ticket #9959 (Session restore: invalid load key) created by chimerax-bug-report@…
[…]
2:50 AM Ticket #9958 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
1:19 AM Ticket #9957 (Crash in QTabBar::paintEvent) created by chimerax-bug-report@…
[…]

Oct 10, 2023:

6:34 PM Ticket #9956 (Download Dicom tool: QThread: Destroyed while thread is still running) created by Elaine Meng
[…]
3:39 PM Ticket #9955 (Movie creation: No space left on device) created by chimerax-bug-report@…
[…]
1:54 PM Ticket #9954 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
1:38 PM Ticket #9953 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
11:55 AM Ticket #9952 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
11:53 AM 2023-10-12 edited by Tom Goddard
(diff)
11:47 AM Dev2023-10-16 created by Tom Goddard
11:46 AM 2023-10-12 created by Tom Goddard
11:44 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:14 AM Ticket #9950 (PDBimages: No module named 'chimerax.atomic.mmcif') closed by Tom Goddard
fixed: Fixed by new PDBImages bundle in Toolshed. Use menu Tools / More …
10:34 AM Ticket #9951 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by huixia.wang@…
[…]
10:28 AM Ticket #9944 (MRC header value nsymbt is invalid) closed by Tom Goddard
invalid: Not clear what the error was they were trying to report. They opened …
9:32 AM Ticket #9949 (QRhiGles2: Failed to make context current) closed by pett
can't reproduce
9:30 AM Ticket #9948 (UnicodeDecodeError opening PDB file) closed by pett
can't reproduce: 1.6.1 also tries UTF-16 and UTF-32, so what encoding is this file?
9:23 AM Ticket #9947 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Duc, Thanks for reporting this problem. This is a bug in the Qt …
9:08 AM Ticket #9943 (Unknown crash) closed by pett
can't reproduce
8:04 AM Ticket #9950 (PDBimages: No module named 'chimerax.atomic.mmcif') created by Prashant.k.singh@…
[…]
7:33 AM Ticket #9949 (QRhiGles2: Failed to make context current) created by chimerax-bug-report@…
[…]
6:11 AM Ticket #9948 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…
[…]
2:44 AM Ticket #9947 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by minhducdkh@…
[…]
1:13 AM Ticket #9946 (SwissDock: chlorines treated as carbons) created by ute.roehrig@…
[…] clusters.dock4.pdb

Oct 9, 2023:

8:27 PM Ticket #9945 (QThread: Destroyed while thread is still running) created by haozhd2@…
[…]
7:33 PM Ticket #9922 (LookSee meeting does not handle two models with same name) closed by Tom Goddard
can't reproduce: I'm not able to reproduce this. There is support for multiple copies …
7:12 PM Ticket #9944 (MRC header value nsymbt is invalid) created by chimerax-bug-report@…
[…]
6:14 PM Ticket #9905 (LookSee meeting does not remove hand controllers when participant leaves) closed by Tom Goddard
fixed: Fixed. Now send a participant left message and the others delete the …
5:44 PM Ticket #9943 (Unknown crash) created by chimerax-bug-report@…
[…]
5:11 PM Ticket #9923 (LookSee meeting incompatible version warning not shown) closed by Tom Goddard
fixed: Fixed. Made the code wait for the first message which must be the …
4:18 PM Dev2023-10-9 edited by Tom Goddard
(diff)
3:04 PM Dev2023-10-9 edited by Tom Goddard
(diff)
1:58 PM Dev2023-10-9 edited by Tom Goddard
(diff)
1:57 PM Ticket #9942 (Implement ribbon worms) created by Tom Goddard
Some users have requested ribbon worms (tubes of varying radius), most …
1:36 PM Dev2023-10-9 edited by Tom Goddard
(diff)
1:06 PM Ticket #9941 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce
1:04 PM Ticket #9941 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
11:33 AM Ticket #9940 (Save mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by pett
duplicate
11:29 AM Ticket #9928 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:28 AM Ticket #9939 (Histogram: `bins` must be positive, when an integer) closed by pett
can't reproduce
11:04 AM Ticket #9937 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:02 AM Ticket #9936 (name 'api_call_headers' is not defined) closed by pett
duplicate
10:59 AM Ticket #9935 (MemoryError opening mmCIF) closed by pett
duplicate
10:58 AM Ticket #9934 (Crash while asking to register) closed by pett
can't reproduce
10:55 AM Ticket #9933 (MemoryError opening mmCIF) closed by pett
duplicate
10:52 AM Ticket #9931 (Blast: self.job.model_name is None) closed by pett
duplicate: Duplicate of #9070
10:48 AM Ticket #9930 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:35 AM Ticket #9929 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Tianyi, Thanks for reporting this problem. This is a bug in the Qt …
10:30 AM Ticket #9927 (MemoryError opening mmCIF) closed by pett
duplicate: May not _actually_ be a duplicate -- for some reason this user opened …
10:12 AM Ticket #9926 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:06 AM Ticket #9925 (Restore new session in old ChimeraX) closed by pett
limitation
7:07 AM Ticket #9940 (Save mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by chimerax-bug-report@…
[…]
6:58 AM Ticket #9939 (Histogram: `bins` must be positive, when an integer) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #9938 (PICKLUSTER: KeyError: 'chain1') created by sabine.jaensch@…
[…]
1:31 AM Ticket #9937 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Oct 8, 2023:

11:06 PM Ticket #9936 (name 'api_call_headers' is not defined) created by chimerax-bug-report@…
[…]
8:14 PM Ticket #9935 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
8:10 PM Ticket #9934 (Crash while asking to register) created by chimerax-bug-report@…
[…]
8:01 PM Ticket #9933 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
8:01 PM Ticket #9932 (MemoryError saving session) created by chimerax-bug-report@…
[…]
6:47 PM Ticket #9931 (Blast: self.job.model_name is None) created by chimerax-bug-report@…
[…]
3:21 PM Ticket #9930 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #9929 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by zhangtia22@…
[…]
7:13 AM Ticket #9928 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
5:36 AM Ticket #9927 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]

Oct 7, 2023:

5:03 AM Ticket #9926 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
4:21 AM Ticket #9925 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]

Oct 6, 2023:

7:34 PM Ticket #9924 (Unable to restore objects of NewerVersionQuery class) created by dzyla@…
[…]
7:09 PM Ticket #9923 (LookSee meeting incompatible version warning not shown) created by Tom Goddard
The LookSee meeting check for incompatible LookSee versions does not …
7:06 PM Ticket #9922 (LookSee meeting does not handle two models with same name) created by Tom Goddard
If I open two copies of a model as LookSee meeting host, then close …
2:16 PM Ticket #9916 (QRhiGles2: Failed to make context current) closed by Tom Goddard
can't reproduce: QOpenGLContext::makeCurrent() called with non-opengl surface …
2:13 PM Ticket #9914 (Error in glClear) closed by Tom Goddard
can't reproduce: OpenGL errors showing status messages at startup. Not clear why.
2:11 PM Ticket #9913 (Numpy memory array during vop zone) closed by Tom Goddard
nonchimerax: Not much memory being used but failed allocating 50 Mbytes.
11:59 AM Ticket #9912 (Cannot reassign secondary structure) closed by pett
not a bug: Hi Graham, There are two residue attributes relevant to secondary …
11:46 AM Ticket #9921 (Allow saving LookingGlass images) closed by Tom Goddard
fixed: Done. Added option saveQuiltImage to lookingglass command, for …
11:41 AM Ticket #9921 (Allow saving LookingGlass images) created by tolung.bio@…
On Oct 4, 2023, at 10:18 PM, Gokhan via ChimeraX-users wrote: Hi, …
11:41 AM Ticket #9919 (MemoryError opening mmCIF files) closed by pett
duplicate
11:02 AM Ticket #9920 (Turning off plane guidelines shouldn't reset the viewers to the ...) created by Zach Pearson
10:18 AM Ticket #9919 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
9:46 AM Ticket #9918 (Crash in event loop) closed by pett
can't reproduce
8:50 AM Ticket #9918 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:16 AM Ticket #9917 (MD Viewer: list index out of range) created by devon.sheppard@…
[…]
5:35 AM Ticket #9916 (QRhiGles2: Failed to make context current) created by chimerax-bug-report@…
[…]
2:23 AM Ticket #9915 (PICKLUSTER: not all models have .chains) created by chimerax-bug-report@…
[…]
12:00 AM Ticket #9914 (Error in glClear) created by chimerax-bug-report@…
[…]

Oct 5, 2023:

9:23 PM 2023-10-5 edited by Zach Pearson
(diff)
8:41 PM Ticket #9913 (Numpy memory array during vop zone) created by chimerax-bug-report@…
[…]
6:09 PM 2023-10-5 edited by Tom Goddard
(diff)
4:46 PM Ticket #9912 (Cannot reassign secondary structure) created by gwheberlig@…
[…]
2:13 PM Ticket #9903 (Graphics crash, macOS 11.7.3, Intel Iris) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:47 AM Ticket #9906 ('BlastProteinJob' object has no attribute '_status') closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/c32d1540d76356ff1cf8d0678278f3
10:45 AM Ticket #9907 (Histogram: operands could not be broadcast together with shapes) closed by pett
duplicate
9:38 AM Ticket #9911 (Erratic EMDB download speeds) created by Tom Goddard
The download speed of an EMDB map can vary by a factor of 10 or 100 …
8:23 AM Ticket #9910 (Missing chain objects) created by Tristan Croll
[…] 5b04_rebuilt.cif
6:25 AM Ticket #9909 (Slow log update) created by Tristan Croll
[…]
2:50 AM Ticket #9908 (Toolbar redraw issue) created by Tristan Croll
[…] Screenshot 2023-10-05 104452.png
1:21 AM Ticket #9907 (Histogram: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]

Oct 4, 2023:

6:44 PM Ticket #9906 ('BlastProteinJob' object has no attribute '_status') created by chimerax-bug-report@…
[…]
6:34 PM Ticket #9905 (LookSee meeting does not remove hand controllers when participant leaves) created by Tom Goddard
In a two person LookSee meeting if the non-host participant leaves the …
4:11 PM Ticket #9904 (Starting a segmentation in 3d then switching to orthoplanes causes ...) created by Zach Pearson
It used to give a traceback, but now when we switch from 3d back to …
3:38 PM Ticket #9800 (LookSee 3 person meeting disconnects when model closed) closed by Tom Goddard
fixed: Fixed in LookSee v8. The send_newly_closed_models() routine was …
1:31 PM Ticket #9903 (Graphics crash, macOS 11.7.3, Intel Iris) created by chimerax-bug-report@…
[…]
12:40 PM Ticket #9900 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: Maybe has to do with lost OpenGL context after computer wakes from …
12:39 PM Ticket #9896 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: User says in description: "I started chimerax normally from the …
11:08 AM Ticket #9901 (Error in TOML example bundle Makefile) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX-Bundle-Template-TOML/blob/main/Makefi
10:32 AM Ticket #9000 (Use finer triangulations in NIH3D scripts) closed by pett
fixed: Bonds and pseudobonds now use cross sections as requested by NIAID
10:30 AM Ticket #9902 (Unknown crash) closed by pett
can't reproduce
10:27 AM Ticket #9902 (Unknown crash) created by chimerax-bug-report@…
[…]
9:13 AM Ticket #9901 (Error in TOML example bundle Makefile) created by a.jankevics@…
Note that on Windows $(CHIMERAX_EXE) uses the …
9:06 AM Ticket #9900 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
6:10 AM Ticket #9899 (MemoryError opening mmCIF files) created by ambar.iqbal@…
[…]
4:49 AM Ticket #9898 (ArtiaX: not all parameters written out) created by magdalena.schacherl@…
[…] Selected_from_MGS003_T1_ts_003_ref55S.star

Oct 3, 2023:

4:41 PM Ticket #9897 (bundle_tutorial.zip broken) created by pett
The "zip-format file" link in the second section of this page: …
2:17 PM Ticket #9896 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
11:53 AM Dev2023-10-9 edited by Tom Goddard
(diff)
11:51 AM Dev2023-10-9 edited by Tom Goddard
(diff)
11:33 AM Dev2023-10-9 edited by Tom Goddard
(diff)
11:27 AM Tickets #8575,​6756,​6757,​6797,​6802,​6817,​6884,​6910,​7374,​7667,​7875,​8419,​8463,​8675,​8704,​8875,​9095,​9209,​9500,​9840,​9841,​9842 batch updated by pett
fixed
11:26 AM Ticket #9893 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:18 AM Dev2023-10-9 created by Tom Goddard
11:17 AM 2023-10-5 created by Tom Goddard
11:15 AM DeveloperMeetings edited by Tom Goddard
(diff)
8:54 AM Ticket #9894 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
2:40 AM Ticket #9895 (MemoryError opening mmCIF files) created by lubiosan.uah@…
[…]
1:33 AM Ticket #9894 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Oct 2, 2023:

7:46 PM Dev2023-10-2 edited by Tom Goddard
(diff)
7:44 PM Dev2023-10-2 edited by Tom Goddard
(diff)
1:49 PM Ticket #9893 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
11:53 AM Ticket #9892 (lighting glitches during "fly" command) closed by Tom Goddard
fixed: Fixed. The fly command interpolated rotation positions as quaternions …
11:01 AM Ticket #9890 (Error in glClear) closed by Tom Goddard
can't reproduce: OpenGL error in expose event for status line at startup on Windows. …
10:54 AM Ticket #9891 (Error in glClear) closed by pett
duplicate
8:47 AM Ticket #9892 (lighting glitches during "fly" command) created by david.haselbach@…
Session attached with named views v1, v2, v3 and soft lighting. If I …
6:53 AM Ticket #9891 (Error in glClear) created by chimerax-bug-report@…
[…]
6:49 AM Ticket #9890 (Error in glClear) created by chimerax-bug-report@…
[…]

Oct 1, 2023:

10:38 AM Dev2023-10-2 edited by pett
(diff)
6:37 AM Ticket #9889 (Unknown crash) created by adautoalves19@…
[…]

Sep 30, 2023:

9:30 AM Ticket #9888 (MemoryError opening mmCIF) created by sk0815142@…
[…]

Sep 29, 2023:

4:34 PM Ticket #9878 (NIH3D "Surface Hydrophobicity" preset not working) closed by pett
fixed: Going to "sharpBoundaries false" broke coloring by hydrophobicity …
3:48 PM ChangeLog edited by Elaine Meng
(diff)
3:47 PM ChangeLog edited by Elaine Meng
(diff)
12:15 PM Ticket #9884 (Qt failed to get OpenGL context on Linux: QRhiGles2: Failed to make ...) closed by Tom Goddard
can't reproduce: It is in the Ask to Register dialog, and also the Toolshed is checking …
11:49 AM Ticket #9887 (Chimera-like control of model display) created by olibclarke@…
[…]
11:47 AM Ticket #9883 (Secondary structure assignment) closed by pett
can't reproduce: Hi Fedaa, There have been some changes to how dssp operates in order …
11:35 AM Ticket #9886 (Select residues between two currently selected residues) created by olibclarke@…
[…]
11:35 AM Ticket #9882 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate: Duplicate of #9328
11:28 AM Ticket #9885 (Allow fetching EMDB map given PDB id) created by olibclarke@…
From: Oliver Clarke Subject: Re: [ChimeraX] #9846: Allow fetching fit …
11:27 AM Ticket #9884 (Qt failed to get OpenGL context on Linux: QRhiGles2: Failed to make ...) created by chimerax-bug-report@…
[…]
10:49 AM Ticket #9862 (Bug Reporter string-encoding issue) closed by Tom Goddard
nonchimerax: I see in the bug report you have Locale: en_GB.UTF-8 Maybe that is …
10:31 AM NIAID2023 edited by Tom Goddard
(diff)
10:25 AM Ticket #9871 ("D" interpreted as "default" in label command) closed by Tom Goddard
fixed: Fixed. That is obscure, but there was already support to not allow …
9:43 AM Ticket #9883 (Secondary structure assignment) created by fedaa.attana.17@…
[…]
4:22 AM Ticket #9882 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]
2:55 AM Ticket #9881 (Title bar missing) created by karin.wallden@…
[…]

Sep 28, 2023:

5:30 PM Ticket #9880 (Open MRC volume series using a GUI) created by olibclarke@…
[…]
4:19 PM Ticket #9879 (Further web services improvements) created by pett
Investigate dynamic scaling. Still need some kind of solution for …
4:18 PM Ticket #9483 (No error message when timeout exceeded) closed by pett
fixed: It looks like the script got changed to 20 workers at some point. …
2:12 PM Ticket #9878 (NIH3D "Surface Hydrophobicity" preset not working) created by kristen.browne@…
As per summary
2:05 PM Ticket #9874 (MemoryError opening mmCIF) closed by pett
duplicate
2:02 PM Ticket #9872 (MemoryError opening mmCIF) closed by pett
duplicate
1:38 PM NIAID2023 edited by Elaine Meng
(diff)
1:28 PM NIAID2023 edited by Elaine Meng
(diff)
1:27 PM NIAID2023 edited by Elaine Meng
(diff)
12:48 PM Ticket #9870 (MemoryError opening mmCIF) closed by pett
duplicate
12:47 PM Ticket #9877 (Cannot uninstall bundle) created by pett
[…]
12:46 PM Ticket #9876 (Installing a bundle reports "No bundles were installed") created by pett
[…]
10:42 AM Ticket #9868 (Failed to lock QIOSurfaceGraphicsBuffer) closed by pett
can't reproduce: 1.4; seems to be a crash in QWebEngine
10:21 AM Ticket #9864 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:08 AM Ticket #9875 (Bug Reporter deprecation warning) created by goddard@…
[…]
9:01 AM Ticket #9874 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
7:32 AM Ticket #9873 (Installed version number not updated) created by Tristan Croll
[…]
5:17 AM Ticket #9872 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
4:49 AM Ticket #9871 ("D" interpreted as "default" in label command) created by Tristan Croll
[…]
4:18 AM Ticket #9870 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
1:36 AM Ticket #9869 (Restoring new session in old ChimeraX) created by jae-hun.jeoung@…
[…]

Sep 27, 2023:

2:41 PM Ticket #9868 (Failed to lock QIOSurfaceGraphicsBuffer) created by chimerax-bug-report@…
[…]
2:30 PM Ticket #9867 (Feature/Region browser requests) created by Elaine Meng
3) The treatment of sequence-feature regions is not as informative and …
1:59 PM Ticket #9866 (Region/feature browsers need to react to non-self-generated region changes) created by Elaine Meng
Changes in color, display, etc.
1:40 PM Ticket #9865 (Have child windows have independent "dockability" status) created by Elaine Meng
(1) region browser kept docking annoyingly but when I unchecked …
1:38 PM Ticket #9863 (Crash in Qt event loop after opening MRC files, Toolshed check also running) closed by Tom Goddard
can't reproduce: No clues as to what caused the crash.
1:14 PM phenix-9-27-23 edited by pett
(diff)
1:14 PM phenix-9-27-23 edited by pett
(diff)
11:53 AM phenix-9-27-23 created by pett
11:24 AM Ticket #9864 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
11:22 AM Features edited by pett
(diff)
10:43 AM Ticket #9861 (Clipper installation) reopened by Greg Couch
There is a bug in the toolshed database right now that might be …
10:27 AM Ticket #9861 (Clipper installation) closed by Greg Couch
limitation: The pip binary doesn't know about the ChimeraX toolshed. You need to …
10:01 AM Ticket #9860 (Unknown crash) closed by pett
can't reproduce: Probably XMAS related
9:58 AM Ticket #9858 (Crash processing atomic changes data) closed by pett
can't reproduce: Hi Bruno, Thanks for reporting this problem. Unfortunately it …
9:43 AM Ticket #9857 (Problem installing ISOLDE) closed by pett
duplicate: Duplicate of #9856
9:39 AM Ticket #9855 (Crash showing XMAS tool) closed by pett
duplicate: Duplicate of #9841
9:37 AM Ticket #9854 (Unknown crash) closed by pett
can't reproduce: Possibly XMAS related
9:36 AM Ticket #9853 (Crash showing XMAS tool) closed by pett
duplicate: Duplicate of #9841
9:34 AM Ticket #9863 (Crash in Qt event loop after opening MRC files, Toolshed check also running) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #9852 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:12 AM Ticket #9862 (Bug Reporter string-encoding issue) created by Tristan Croll
[…]
8:11 AM Ticket #9861 (Clipper installation) created by Tristan Croll
[…]
6:45 AM Ticket #9860 (Unknown crash) created by chimerax-bug-report@…
[…]
6:41 AM Ticket #9782 (Add clipper command documentation online) closed by Tristan Croll
fixed: Done. Clipper documentation is now at …
6:38 AM Ticket #9859 ("positive contour" mousemode) created by olibclarke@…
[…]
4:17 AM Ticket #9858 (Crash processing atomic changes data) created by bruno.haymele@…
[…]
2:53 AM Ticket #9857 (Problem installing ISOLDE) created by vincent.zoete@…
[…]
2:53 AM Ticket #9856 (Problem installing ISOLDE) created by vincent.zoete@…
[…]
2:51 AM Ticket #9855 (Crash showing XMAS tool) created by chimerax-bug-report@…
[…]
2:29 AM Ticket #9854 (Unknown crash) created by chimerax-bug-report@…
[…]
2:25 AM Ticket #9853 (Crash showing XMAS tool) created by chimerax-bug-report@…
[…]

Sep 26, 2023:

8:59 PM Ticket #9852 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
6:25 PM Ticket #9848 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by Tom Goddard
nonchimerax: This crash was in Apple's Radeon graphics driver. Unfortunately …
6:04 PM Ticket #3708 (EMDB initial contour level) closed by Tom Goddard
fixed: Done. Fetching an EMDB map now always uses the recommended contour …
5:52 PM Ticket #9846 (Allow fetching fit PDB models together with EMDB maps) closed by Tom Goddard
fixed: Done. You can fetch the fit atomic models with EMDB maps using the …
5:42 PM Ticket #9851 (OpenGL error created 3D texture larger than maximum size of 2048) created by magdalena.schacherl@…
[…]
1:32 PM Ticket #9850 (Issues when Segmentations tool is already open w/o data when new DICOM ...) created by Elaine Meng
This situation occurs because closing the previous DICOM data does not …
1:28 PM Ticket #9849 (DICOM: Segmentations list not cleared when all models closed) created by Elaine Meng
I guess the summary says it all. In itself, not that bad, but there …
11:54 AM Ticket #9845 (Region browser check box bug) closed by pett
fixed
10:38 AM Dev2023-10-2 created by Tom Goddard
10:37 AM 2023-9-28 created by Tom Goddard
10:36 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:25 AM Ticket #9847 (SEQCROW: file-reader panel: KeyError: 'all_geom') closed by pett
duplicate: Duplicate of #9832
8:46 AM Ticket #9848 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by lp212@…
[…]
1:08 AM Ticket #9847 (SEQCROW: file-reader panel: KeyError: 'all_geom') created by chimerax-bug-report@…
[…]

Sep 25, 2023:

6:19 PM Ticket #9846 (Allow fetching fit PDB models together with EMDB maps) created by olibclarke@…
[…]
3:54 PM Ticket #9837 (Crashed in Qt event loop after opening a session) closed by Tom Goddard
can't reproduce: Crashed in Qt event loop after opening a session. No clues. When …
3:34 PM Dev2023-9-25 edited by Tom Goddard
(diff)
3:00 PM Ticket #9831 (traceback when opening session without combining existing combined session) closed by pett
fixed: Sequence alignment management data wasn't being correctly updated when …
2:36 PM Ticket #9845 (Region browser check box bug) created by Elaine Meng
[…]
2:15 PM Ticket #9835 (UnicodeDecodeError reading PDBQT file) closed by pett
fixed: Fix: …
2:00 PM Ticket #9844 (Crash in garbage collection) closed by pett
duplicate: _cleanup was removed for just this reason
1:49 PM Ticket #9844 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:46 PM Ticket #9843 (label listfonts: QFontDatabase(a0: QFontDatabase): not enough arguments) closed by pett
duplicate: Fixed two days after the reporting version was made.
1:33 PM Ticket #9843 (label listfonts: QFontDatabase(a0: QFontDatabase): not enough arguments) created by chimerax-bug-report@…
[…]
1:11 PM Ticket #9839 (Crash in garbage collection during new object allocation) closed by pett
can't reproduce
1:08 PM Ticket #9508 (TypeError setting framerate) closed by Zach Pearson
fixed
1:08 PM Ticket #9838 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Klara, Thanks for reporting this problem. This is a bug in the Qt …
1:03 PM Ticket #9232 (Wrong pandas installed) closed by Zach Pearson
not a bug
1:03 PM Ticket #9272 (Bundles not installing) closed by Zach Pearson
fixed
1:00 PM Ticket #9836 (MemoryError opening mmCIF) closed by pett
duplicate
12:39 PM Ticket #9833 (Graphics crash, macOS 13.5.2, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
12:37 PM Ticket #9826 (Crash recording movie) closed by Tom Goddard
nonchimerax: ChimeraX crashed in your graphics driver while trying to create an …
12:27 PM Ticket #9827 (Crash in graphics driver, Apple M1, macOS 13.5.2, huge map) closed by Tom Goddard
nonchimerax: Crash in Apple M1 graphics driver, probably due to allocating a ton of …
11:56 AM Ticket #9834 (Coulombic: 'Atom' object has no attribute 'charge') closed by pett
can't reproduce: Seems somehow related to the >100,000 atom PDB file, but would need …
11:29 AM Ticket #9830 (Crash showing open dialog) closed by pett
can't reproduce
11:28 AM Ticket #9829 (XMAS: crash in ~QGridLayout()) closed by pett
duplicate
11:25 AM Ticket #9828 (Port RR Distance Maps) closed by pett
duplicate: Hi Michael, Atom specs can have spaces in them, and therefore …
10:43 AM Ticket #9824 (Crash in Residues.secondary_structure_ids) closed by pett
can't reproduce: Would need a reproducible test case
8:34 AM Ticket #9842 (XMAS trying to set attribute of non-existent pseudobonds) created by chimerax-bug-report@…
[…]
8:27 AM Ticket #9841 (Crash showing XMAS tool) created by chimerax-bug-report@…
[…]
8:18 AM Ticket #9840 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by chimerax-bug-report@…
[…]
7:41 AM Ticket #9839 (Crash in garbage collection during new object allocation) created by chimerax-bug-report@…
[…]
3:29 AM Ticket #9838 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by klara.blascitz@…
[…]
2:32 AM Ticket #9837 (Crashed in Qt event loop after opening a session) created by chimerax-bug-report@…
[…]

Sep 24, 2023:

11:42 PM Ticket #9836 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
10:50 PM Ticket #9835 (UnicodeDecodeError reading PDBQT file) created by hwang.sunwook@…
[…]
1:52 PM Ticket #9834 (Coulombic: 'Atom' object has no attribute 'charge') created by chimerax-bug-report@…
[…]
9:20 AM Ticket #9833 (Graphics crash, macOS 13.5.2, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

Sep 23, 2023:

8:58 PM Ticket #9832 (SEQCROW: file-reader panel: KeyError: 'all_geom') created by chimerax-bug-report@…
[…]

Sep 22, 2023:

5:02 PM Ticket #9831 (traceback when opening session without combining existing combined session) created by Elaine Meng
[…]
4:55 PM ChangeLog edited by Elaine Meng
(diff)
4:53 PM ChangeLog edited by Elaine Meng
(diff)
9:45 AM Ticket #9830 (Crash showing open dialog) created by chimerax-bug-report@…
[…]
6:13 AM Ticket #9829 (XMAS: crash in ~QGridLayout()) created by chimerax-bug-report@…
[…]
4:58 AM Ticket #9828 (Port RR Distance Maps) created by weberm@…
[…]
4:13 AM Ticket #9827 (Crash in graphics driver, Apple M1, macOS 13.5.2, huge map) created by chimerax-bug-report@…
[…]

Sep 21, 2023:

8:33 PM Ticket #9826 (Crash recording movie) created by vsreddy@…
[…]
5:38 PM ChangeLog edited by pett
(diff)
5:36 PM ChangeLog edited by pett
(diff)
5:35 PM ChangeLog edited by pett
(diff)
5:35 PM ChangeLog edited by pett
(diff)
5:31 PM Ticket #9258 (Combine sessions) closed by pett
fixed: In tomorrow's daily build you will be able to combine a session file …
4:54 PM Ticket #9825 (Quest VR is not smooth) created by goddard@…
[…]
3:42 PM Ticket #9823 (Mac scrollbar behavior) closed by pett
fixed: The startup-commands widget sets its initial width/height via a …
3:03 PM Ticket #9824 (Crash in Residues.secondary_structure_ids) created by chimerax-bug-report@…
[…]
2:43 PM Ticket #9823 (Mac scrollbar behavior) reopened by pett
I still don't know that there's anything I can do about this (probably …
2:19 PM Ticket #9823 (Mac scrollbar behavior) closed by pett
limitation
2:19 PM Ticket #9823 (Mac scrollbar behavior) reopened by pett
2:05 PM Ticket #9823 (Mac scrollbar behavior) closed by pett
not a bug: Hi Oli, Pretty sure this is a Mac "feature". The startup-commands …
1:27 PM Ticket #9822 (Getting this error upon hitting "Accept" in the user agreement; tried ...) closed by pett
can't reproduce: Hi Shallee, Thanks for reporting this problem. I just tried this and …
1:23 PM Ticket #9821 (Crash in chain_trace_atoms) closed by pett
can't reproduce: Performing the same "sym" command on the regular 6L2T entry and asking …
1:14 PM Ticket #9820 (MemoryError opening mmCIF) closed by pett
duplicate
1:08 PM Ticket #9818 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
can't reproduce
12:49 PM 2023-9-21 edited by Tom Goddard
(diff)
11:58 AM Ticket #9823 (Mac scrollbar behavior) created by olibclarke@…
[…]
10:30 AM Ticket #9459 (Read DICOM files that don't have .dcm (or any) extension) closed by Zach Pearson
fixed: This should be working as of …
4:51 AM Ticket #9822 (Getting this error upon hitting "Accept" in the user agreement; tried ...) created by Pages@…
[…] [[Image(...)]]
3:28 AM Ticket #9821 (Crash in chain_trace_atoms) created by chimerax-bug-report@…
[…]
12:11 AM Ticket #9820 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]

Sep 20, 2023:

5:35 PM Ticket #9819 (Send to Quest fails if headset sleeps) created by goddard@…
[…]
4:17 PM Ticket #9559 (DICOM Segmentations 2D views should show overlay of active ...) closed by Zach Pearson
fixed: Done. …
4:12 PM Ticket #9818 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
3:25 PM Ticket #9817 (Second drag-and-drop produces KeyError) closed by Tom Goddard
can't reproduce: This same error was reported 2 weeks ago, ticket #9712. It looks like …
1:05 PM Ticket #9815 (Old session requires State methods from ProviderManager) closed by pett
duplicate
12:58 PM Ticket #9817 (Second drag-and-drop produces KeyError) created by rohou.alexis@…
[…]
12:57 PM Ticket #7094 (RFE: Persist tasks across ChimeraX sessions) closed by Zach Pearson
fixed: Job restore code merged to develop
12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) closed by Zach Pearson
duplicate
12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) reopened by Zach Pearson
12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) closed by Zach Pearson
fixed: This has been fixed in the daily build.
11:58 AM Ticket #9813 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by pett
duplicate: Hi Ofer, Thanks for reporting this problem. It has been fixed in …
11:35 AM Ticket #9810 (EMDB TimeoutError) closed by Tom Goddard
nonchimerax: The error messages says the EMDB did not respond while fetching EMDB …
11:35 AM Ticket #9812 (Problems with .xtc trajectory visualization) closed by pett
can't reproduce: Hi Samira, Thanks for reporting this problem. My reading of the …
11:01 AM Ticket #9811 (Crash handling text input) closed by pett
can't reproduce
10:32 AM Ticket #9816 (Old session requires State methods from ProviderManager) created by zehr.elena@…
[…]
10:31 AM Ticket #9815 (Old session requires State methods from ProviderManager) created by zehr.elena@…
[…]
5:15 AM Ticket #9814 (name 'api_call_headers' is not defined) created by chimerax-bug-report@…
[…]
5:08 AM Ticket #9813 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by ofer.filiba@…
[…]
3:30 AM Ticket #9812 (Problems with .xtc trajectory visualization) created by samira.alsadi@…
[…]
2:36 AM Ticket #9811 (Crash handling text input) created by chimerax-bug-report@…
[…]

Sep 19, 2023:

4:41 PM Ticket #9810 (EMDB TimeoutError) created by connor9white@…
[…]
3:24 PM Ticket #9807 (patching pyopenxr failed on windows) closed by Zach Pearson
fixed
2:17 PM Ticket #9809 (MemoryError opening mmCIF files) created by kamalendu-pal@…
[…]
12:26 PM Ticket #9808 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
nonchimerax: Graphics driver bug with ATI Radeon HD 3450 graphics card from 2008 …
11:43 AM Ticket #9808 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…
[…]
11:30 AM Ticket #6386 (Avoid opening a zillion alignments) closed by pett
fixed
11:09 AM Dev2023-9-25 created by Tom Goddard
11:06 AM 2023-9-14 edited by Tom Goddard
(diff)
11:06 AM 2023-9-21 edited by Tom Goddard
(diff)
11:06 AM 2023-9-21 edited by Tom Goddard
(diff)
11:06 AM 2023-9-21 created by Tom Goddard
11:05 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:30 AM Ticket #9807 (patching pyopenxr failed on windows) created by Zach Pearson
Doing a clean install to see if it clears up some other weird behavior …
10:16 AM Ticket #9806 (Crash opening mmCIF file) closed by pett
can't reproduce: 1.2.4
10:11 AM Ticket #9805 (Crash opening mmCIF file) closed by pett
can't reproduce: 1.2.4
10:10 AM Ticket #9804 (Crash opening mmCIF file) closed by pett
can't reproduce: Version 1.2.4
10:09 AM Ticket #9803 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:08 AM Ticket #9802 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
8:49 AM Ticket #9806 (Crash opening mmCIF file) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #9805 (Crash opening mmCIF file) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #9804 (Crash opening mmCIF file) created by chimerax-bug-report@…
[…]
2:33 AM Ticket #9797 (Crash in "isolde start") closed by Tristan Croll
can't reproduce: Looks like it crashed while loading a pickle file in a separate …
12:37 AM Ticket #9803 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Sep 18, 2023:

4:34 PM Dev2023-9-18 edited by Tom Goddard
(diff)
2:49 PM Ticket #9791 (cartoon style unnecessarily computes ribbon(?)) closed by pett
duplicate: The basic problem is that secondary-structure calculation is very …
1:49 PM Ticket #9802 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
1:36 PM Ticket #9798 (Restore new session in old ChimeraX) closed by pett
limitation: Hi Anamika, Although you can restore old sessions in newer versions …
12:42 PM Ticket #9801 (LookSee meeting file transfer very slow, 20 seconds) created by Tom Goddard
In a LookSee 2 or 3 person meeting at SLAC with Mike Schmid and JJ on …
12:32 PM Ticket #9800 (LookSee 3 person meeting disconnects when model closed) created by Tom Goddard
In testing 3-person LookSee (version 6) meetings at SLAC on September …
12:17 PM Ticket #9799 (Make sure 5 character CCD templates in mmCIF files work) created by Tom Goddard
The PDB expects to start using 5 character chemical component names by …
12:11 PM Ticket #9796 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
12:09 PM Ticket #9795 (MemoryError opening mmCIF) closed by pett
duplicate
12:08 PM Ticket #9794 (Maestro: KeyError: 'i_m_residue_number') closed by pett
can't reproduce: Duplicate of #9215
12:03 PM Ticket #9793 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by pett
duplicate: Duplicate of #8706
11:58 AM Ticket #9792 (Rotamer library needs access to ui_name) closed by pett
duplicate: Hi Dawid, Thanks for reporting this problem. It has been fixed in …
7:49 AM Ticket #9798 (Restore new session in old ChimeraX) created by apate31@…
[…]
7:20 AM Ticket #9797 (Crash in "isolde start") created by chimerax-bug-report@…
[…]
1:48 AM Ticket #9796 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Sep 17, 2023:

5:05 PM Ticket #9795 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
7:52 AM Ticket #9794 (Maestro: KeyError: 'i_m_residue_number') created by chimerax-bug-report@…
[…]
6:49 AM Ticket #9793 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by chimerax-bug-report@…
[…]
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