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Opened 2 years ago
Closed 2 years ago
#9996 closed defect (not a bug)
view command not doing smooth zoom
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22621
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
I did 'view name p1', then use the scroll button of mouse to zoom in the view, and then 'view name p2'. But when I do 'view p1; view p2 60', it's not zooming gradually to p2, but a 1 frame change at the end. I guess it's something realted with camera setting, but I really don't know how to fix this. In a previous session same thing works fine.
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\test.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
377, step 1, values float32
Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at
level 128, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel
4.04, shown at level 0.53, step 1, values float32
Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at
level 0.218, step 1, values float32
Opened volume difference as #12, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Log from Mon Oct 16 11:12:02 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\20230911_lattice.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at
level 128, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel
4.04, shown at level 0.247, step 1, values float32
Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at
level 0.218, step 1, values float32
Opened volume difference as #12, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Log from Sun Oct 8 14:18:16 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\20230911_lattice.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
436, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
167, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
288, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
197, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
460, step 1, values float32
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
238, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
113, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
264, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
142, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
395, step 1, values float32
Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at
level 128, step 1, values float32
Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel
4.04, shown at level 0.247, step 1, values float32
Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at
level 0.218, step 1, values float32
Log from Sun Oct 8 14:12:37 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\20230911_lattice.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
436, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
167, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
288, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
197, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
460, step 1, values float32
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
238, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
113, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
264, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
142, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
395, step 1, values float32
Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at
level 128, step 1, values float32
Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel
4.04, shown at level 0.247, step 1, values float32
Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at
level 0.218, step 1, values float32
Log from Sun Oct 8 12:28:18 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\20230911_lattice.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
436, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
167, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
288, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
197, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
460, step 1, values float32
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
238, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
113, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
264, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
142, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
395, step 1, values float32
Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at
level 128, step 1, values float32
Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel
4.04, shown at level 0.247, step 1, values float32
Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at
level 0.218, step 1, values float32
Log from Mon Sep 11 08:12:07 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\20230803_model_domaincolored.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
436, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
167, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
288, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
296, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
460, step 1, values float32
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
238, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
113, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
264, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
142, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
395, step 1, values float32
Log from Tue Sep 5 22:20:13 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\kfzr5\\\OneDrive - Florida State
> University\\\data\\\20230803_model_domaincolored.cxs"
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
436, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
167, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
288, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
296, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
460, step 1, values float32
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
238, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
113, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
264, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
142, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
395, step 1, values float32
Log from Thu Aug 17 03:19:28 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\Users\kfzr5\OneDrive - Florida State
> University\Drp1\structures_kristy\PA_raw.mrc" format mrc
Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level
689, step 1, values float32
> open "C:/Users/kfzr5/OneDrive - Florida State
> University/Drp1/structures_kristy/20230803_stacked_lattice/lattice_dVD526-624.pdb"
Chain information for lattice_dVD526-624.pdb #2
---
Chain | Description
A D E H I L M P Q T U X Y b c d i j | No description available
B C F G J K N O R S V W Z a e f g h | No description available
> volume #1 level 389.5
> ui tool show "Model Panel"
> hide #!1 models
Drag select of 364815 atoms, 54 pseudobonds
> cartoon (#!2 & sel)
> hide (#!2 & sel) target a
Alignment identifier is 1
Alignment identifier is 2
Drag select of 42 residues
> select up
1978 atoms, 1987 bonds, 122 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350-492
41490 atoms, 41832 bonds, 2574 residues, 1 model selected
> color sel purple
Drag select of 287 residues
> select up
5762 atoms, 5797 bonds, 363 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1-322
92466 atoms, 93060 bonds, 5796 residues, 1 model selected
> color sel cyan
> select /b:302
14 atoms, 14 bonds, 1 residue, 1 model selected
> select up
701 atoms, 706 bonds, 41 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282-322
12618 atoms, 12708 bonds, 738 residues, 1 model selected
> color sel red
Drag select of 199 residues
Drag select of 111 residues
Drag select of 206 residues
> select up
5303 atoms, 5329 bonds, 335 residues, 1 model selected
> select up
16392 atoms, 16512 bonds, 1024 residues, 1 model selected
> select down
5303 atoms, 5329 bonds, 335 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:272
396 atoms, 378 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:1-272
73908 atoms, 74340 bonds, 18 pseudobonds, 4662 residues, 2 models selected
> color (#!2 & sel) red
> color (#!2 & sel) lime
Drag select of 352 residues, 1 pseudobonds
> select up
11972 atoms, 12051 bonds, 1 pseudobond, 733 residues, 2 models selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:381
288 atoms, 270 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:381-690
62424 atoms, 62892 bonds, 18 pseudobonds, 3798 residues, 2 models selected
> color (#!2 & sel) purple
Drag select of 454 residues, 2 pseudobonds
> select up
13358 atoms, 13449 bonds, 2 pseudobonds, 815 residues, 2 models selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301-734
97479 atoms, 98181 bonds, 18 pseudobonds, 6030 residues, 2 models selected
Drag select of 264 residues, 1 pseudobonds
> select up
11022 atoms, 11096 bonds, 1 pseudobond, 669 residues, 2 models selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:321
198 atoms, 180 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:321-703
82683 atoms, 83331 bonds, 18 pseudobonds, 5112 residues, 2 models selected
> color (#!2 & sel) purple
Drag select of 14 residues
> select up
789 atoms, 790 bonds, 49 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704
270 atoms, 252 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704-736
9594 atoms, 9630 bonds, 594 residues, 1 model selected
> color sel red
Drag select of 3 residues
> select up
300 atoms, 301 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301-318
5400 atoms, 5418 bonds, 324 residues, 1 model selected
> color sel red
Drag select of 3 residues
> select up
443 atoms, 442 bonds, 28 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704
270 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704-732
8244 atoms, 8226 bonds, 522 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704
270 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704-736
9594 atoms, 9630 bonds, 594 residues, 1 model selected
> color sel red
Drag select of 62 residues
> select up
3135 atoms, 3153 bonds, 191 residues, 1 model selected
Drag select of 4 residues
> select up
339 atoms, 340 bonds, 21 residues, 1 model selected
> select /L:325
14 atoms, 14 bonds, 1 residue, 1 model selected
> select up
77 atoms, 77 bonds, 6 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323-328
1386 atoms, 1386 bonds, 108 residues, 1 model selected
> color sel red
> select /L:332
14 atoms, 13 bonds, 1 residue, 1 model selected
> select up
339 atoms, 340 bonds, 21 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329
396 atoms, 378 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329-349
6102 atoms, 6120 bonds, 378 residues, 1 model selected
> color sel purple
> select /L:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select up
287 atoms, 290 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:363
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:363-380
5166 atoms, 5220 bonds, 324 residues, 1 model selected
> color sel purple
Drag select of 4 residues
> select /L:351
14 atoms, 13 bonds, 1 residue, 1 model selected
> select up
185 atoms, 185 bonds, 13 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:350
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:350-362
3330 atoms, 3330 bonds, 234 residues, 1 model selected
> color sel purple
Drag select of 4 residues
> select clear
> select /L:702
16 atoms, 15 bonds, 1 residue, 1 model selected
> select up
225 atoms, 225 bonds, 14 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:690
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:690-703
4050 atoms, 4050 bonds, 252 residues, 1 model selected
> color sel purple
Drag select of 1 residues
> select up
142 atoms, 143 bonds, 10 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319-328
2556 atoms, 2574 bonds, 180 residues, 1 model selected
> color sel purple
> select /J:292
19 atoms, 18 bonds, 1 residue, 1 model selected
> select up
313 atoms, 315 bonds, 17 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282-298
5634 atoms, 5670 bonds, 306 residues, 1 model selected
> color sel red
Drag select of 2 residues
> select up
106 atoms, 106 bonds, 7 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273
378 atoms, 378 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273-281
2412 atoms, 2430 bonds, 162 residues, 1 model selected
> color sel red
> select clear
> select /d:510
14 atoms, 13 bonds, 1 residue, 1 model selected
> select up
355 atoms, 356 bonds, 23 residues, 1 model selected
> color sel orange
> select /d:627
12 atoms, 11 bonds, 1 residue, 1 model selected
> select up
294 atoms, 295 bonds, 18 residues, 1 model selected
> color sel orange
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:522
432 atoms, 414 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:522-638
5292 atoms, 5310 bonds, 18 pseudobonds, 324 residues, 2 models selected
> color (#!2 & sel) orange
> select /d:506
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
355 atoms, 356 bonds, 23 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-521
6390 atoms, 6408 bonds, 414 residues, 1 model selected
> color sel orange
> select /N:513
15 atoms, 14 bonds, 1 residue, 1 model selected
> select up
345 atoms, 346 bonds, 22 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499-520
6210 atoms, 6228 bonds, 396 residues, 1 model selected
> color sel orange
Drag select of 6 residues
> select up
242 atoms, 243 bonds, 15 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:521
180 atoms, 162 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:521-638
5463 atoms, 5481 bonds, 18 pseudobonds, 342 residues, 2 models selected
> color (#!2 & sel) orange
> show #!1 models
> hide #!1 models
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #2 distance 24.24
> color zone #1 near #2 distance 11.48
> color zone #1 near #2 distance 39.29
> color zone #1 near #2 distance 38.29
> color zone #1 near #2 distance 24
[Repeated 1 time(s)]
> volume #1 level 341.5
> color zone #1 near #2 distance 22
[Repeated 1 time(s)]
> color zone #1 near #2 distance 21
> color zone #1 near #2 distance 20
[Repeated 1 time(s)]
> hide #!1 models
Alignment identifier is 1
> select clear
Alignment identifier is 1
Alignment identifier is 2
Drag select of 2 residues
> select up
142 atoms, 143 bonds, 10 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319-328
2556 atoms, 2574 bonds, 180 residues, 1 model selected
> color sel red
Drag select of 2 residues
> select up
60 atoms, 59 bonds, 4 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700-703
1080 atoms, 1062 bonds, 72 residues, 1 model selected
> color sel red
> show #!1 models
> color zone #1 near #2 distance 20
> volume splitbyzone #1
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 6 as #3.7, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
> hide #!3.1 models
> pwd
Current working directory is: C:\ProgramData\ChimeraX
> cd "C:/Users/kfzr5/OneDrive - Florida State University/data"
Current working directory is: C:\Users\kfzr5\OneDrive - Florida State
University\data
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230803_model_domaincolored.cxs" includeMaps true
> ui tool show "Side View"
> lighting soft
> set bgColor white
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> view sel
> view orient
[Repeated 2 time(s)]
> hide #!3.2 models
> show #!3.2 models
> hide #!3.2 models
> hide #!3.3 models
> show #!3.3 models
> hide #!3.4 models
> hide #!3.7 models
> hide #!3.6 models
> hide #!3.5 models
> volume #3.3 level 449.5
> show #!3.2 models
> hide #!3.3 models
> volume #3.2 level 456.2
> show #!3.3 models
> hide #!3.3 models
> hide #!3.2 models
> show #!3.4 models
> volume #3.4 level 304.4
> select clear
> volume #3.4 level 336.2
> show #!3.5 models
> hide #!3.4 models
> volume #3.5 level 258.8
> volume #3.5 level 153
> show #!1 models
> show #!3.6 models
> hide #!1 models
> hide #!3.5 models
> volume #3.6 level 516.7
> hide #!3.6 models
> hide #!3.7 models
> select /B:300
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
23 atoms, 22 bonds, 2 residues, 1 model selected
> select clear
Alignment identifier is 1
Alignment identifier is 2
> select /B:300
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
23 atoms, 22 bonds, 2 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:299
216 atoms, 198 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:299-300
414 atoms, 396 bonds, 36 residues, 1 model selected
> color sel red
> color zone #1 near #2 distance 20
> close #3
> volume splitbyzone #1
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
> hide #!3.3 models
> show #!3.3 models
> volume #3.3 level 218.2
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230803_model_domaincolored.cxs" includeMaps true
> hide #!3.1 models
> volume #3.2 level 436.4
> volume #3.3 level 166.8
> volume #3.4 level 426.5
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> volume #3.4 level 484.8
> volume #3.4 level 288.5
> volume #3.5 level 424.3
> volume #3.5 level 295.6
> volume #3.6 level 459.9
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> hide #!3 models
> show #!2 models
> show #!3.1 models
> hide #!3 models
> select /A
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /B
10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select /C
10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select /D
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /E
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /F
10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select /G
10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select /H
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /I
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /J
10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select /K
10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select /L
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /M
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /N
10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 17 models selected
> cartoon hide (#!2 & sel)
> select /L
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> cartoon (#!2 & sel)
> select /M
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> cartoon (#!2 & sel)
> select /L
10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected
> select /K
10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected
> cartoon (#!2 & sel)
> select /J
10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected
> cartoon (#!2 & sel)
> cartoon hide (#!2 & sel)
> select /N
10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected
> cartoon (#!2 & sel)
Drag select of 2522 residues, 6 pseudobonds
> color zone #1 near sel distance 20
> volume splitbyzone #1
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
> color zone #1 near sel distance 19
> color zone #1 near sel distance 18
[Repeated 1 time(s)]
> hide #!4 models
> show #!1 models
> color zone #1 near sel distance 17
> color zone #1 near sel distance 16
> color zone #1 near sel distance 15
> color zone #1 near sel distance 14
> color zone #1 near sel distance 13
> color zone #1 near sel distance 12
> color zone #1 near sel distance 11
> color zone #1 near sel distance 10
> color zone #1 near sel distance 9.9
> color zone #1 near sel distance 9.8
> color zone #1 near sel distance 9.7
> color zone #1 near sel distance 9.6
> color zone #1 near sel distance 9.5
> color zone #1 near sel distance 9.6
> color zone #1 near sel distance 9.7
> color zone #1 near sel distance 9.8
> color zone #1 near sel distance 9.9
> color zone #1 near sel distance 10
> color zone #1 near sel distance 11
> color zone #1 near sel distance 12
> color zone #1 near sel distance 13
> hide #!1 models
> show #!1 models
> close #4
> volume splitbyzone #1
Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level
342, step 1, values float32
> hide #!4.1 models
> hide #!2 models
> ui tool show "Surface Color"
> volume #!4.2-6 style surface
> hide #!4.2 models
> hide #!4.3 models
> hide #!4.4 models
> hide #!4.5 models
> hide #!4.6 models
> show #!4.1 models
> hide #!4.1 models
> show #!4.2 models
> show #!4.3 models
> show #!4.4 models
> show #!4.5 models
> show #!4.6 models
> show #!4.1 models
> hide #!4.1 models
> color single #4.2
> color zone #4.2 near #2 distance 24.24
> color single #4.2
[Repeated 1 time(s)]
> show #!4.1 models
> hide #!4.1 models
> color #4.2 black models
> color #4.2 #b20000ff models
> color #4.2 #b2b2b2ff models
> color #4.3 #b2b2b2ff models
> color #4.4 #8000b2ff models
> color #4.4 #0100b2ff models
> color #4.4 #b2b2b2ff models
> color #4.5 #b2b2b2ff models
> color #4.6 #b2b2b2ff models
> show #!3 models
> hide #!3 models
> show #!3 models
> volume #4.2 level 238.3
> volume #4.3 level 157.9
> volume #4.3 level 139.9
> volume #4.4 level 268.4
> volume #4.5 level 299.3
> volume #4.5 level 218.6
> hide #!3.1 models
> volume #4.5 level 141.8
> volume #4.6 level 184.6
> volume #4.6 level 394.8
> volume #4.4 level 273
> volume #4.4 level 268.4
> volume #4.4 level 263.8
> volume #4.3 level 113
> color #4.2 #b2b2b2b4 models
> color #4.2 #ffffffb4 models
> color #4.2 #b2b2b2b4 models
> color #4.2 #ffffffb4 models
> color #4.2 #b2b2b2b4 models
> color #4.2 #ffffffb4 models
> color #4.2 #b2b2b2b4 models
> color #4.2 #b2b2b2ff models
> color #4.2 white models
> color #4.2 #b2b2b2ff models
> color #4.2 white models
> color #4.2 #b2b2b2ff models
> color #4.2 #b2b2b2b4 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230803_model_domaincolored.cxs"
——— End of log from Thu Aug 17 03:19:28 2023 ———
opened ChimeraX session
> color #3.2 #0cffffff models
> color #3.2 #0c8effff models
> color #3.2 #0c8eb5ff models
> color #3.3 #ff5356ff models
> color #3.4 #a60080ff models
> color #3.4 #a62080ff models
> color #3.4 #a62099ff models
> color #3.6 #83ff00ff models
> color #3.6 #83ff67ff models
> lighting soft
> pwd
Current working directory is: C:\Users\kfzr5\OneDrive - Florida State
University\data
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230803_model_domaincolored.cxs"
——— End of log from Tue Sep 5 22:20:13 2023 ———
opened ChimeraX session
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!3 models
> ui tool show "Color Zone"
> hide #!3 models
> show #!2 models
Alignment identifier is 1
Alignment identifier is 2
Drag select of 29 residues
> select up
1298 atoms, 1304 bonds, 82 residues, 1 model selected
> select /L-M:499
28 atoms, 28 bonds, 2 residues, 1 model selected
> select /L-M:499-638
1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected
> color zone #3.6 near #2 distance 24.24
> hide #!3.6 models
> show #!3.6 models
> hide #!3.6 models
> hide #!3.5 models
> show #!3.5 models
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 34 models selected
> cartoon (#!2 & sel)
> show #!3.6 models
> show #!3.1 models
> hide #!3.1 models
> hide #!3 models
> show #!3 models
> hide #!3.6 models
> show #!3.6 models
> color #3.6 #00aa00ff models
> color #3.6 #83ff67ff models
> hide #!3 models
Drag select of 86 residues, 6 pseudobonds
> select up
3242 atoms, 3256 bonds, 6 pseudobonds, 204 residues, 2 models selected
> select up
61392 atoms, 61824 bonds, 6 pseudobonds, 3822 residues, 2 models selected
> select down
3242 atoms, 3256 bonds, 6 pseudobonds, 204 residues, 2 models selected
Drag select of 6 residues
Drag select of 12 residues
> select up
242 atoms, 243 bonds, 15 residues, 1 model selected
> select up
8889 atoms, 8955 bonds, 551 residues, 1 model selected
> select down
242 atoms, 243 bonds, 15 residues, 1 model selected
Drag select of 44 residues, 1 pseudobonds
> select up
2743 atoms, 2756 bonds, 1 pseudobond, 170 residues, 2 models selected
> select /L-M:499
28 atoms, 28 bonds, 2 residues, 1 model selected
> select /L-M:499-638
1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected
> select /L-M:499
28 atoms, 28 bonds, 2 residues, 1 model selected
> select /L-M:499-638
1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected
Drag select of 56 residues, 2 pseudobonds
Drag select of 22 residues, 2 pseudobonds
> select up
617 atoms, 619 bonds, 2 pseudobonds, 38 residues, 2 models selected
> select up
20464 atoms, 20608 bonds, 2 pseudobonds, 1274 residues, 2 models selected
> select down
617 atoms, 619 bonds, 2 pseudobonds, 38 residues, 2 models selected
Drag select of 43 residues, 2 pseudobonds
> select up
1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected
Drag select of 7 residues
> select up
649 atoms, 651 bonds, 41 residues, 1 model selected
> select /L-M:522
48 atoms, 46 bonds, 2 residues, 1 model selected
> select /L-M:522-638
588 atoms, 590 bonds, 2 pseudobonds, 36 residues, 2 models selected
> hide #!2 models
> show #!2 models
> select /L-M:336
38 atoms, 36 bonds, 2 residues, 1 model selected
> select /L-M:336-363
838 atoms, 842 bonds, 56 residues, 1 model selected
> select /L-M:286
20 atoms, 18 bonds, 2 residues, 1 model selected
> select /L-M:286-338
1732 atoms, 1742 bonds, 106 residues, 1 model selected
> select /L-M:497-522
836 atoms, 840 bonds, 52 residues, 1 model selected
> select /L-M:497-636
1334 atoms, 1342 bonds, 2 pseudobonds, 82 residues, 2 models selected
Drag select of 6 residues
> select up
649 atoms, 652 bonds, 41 residues, 1 model selected
> select up
10232 atoms, 10304 bonds, 637 residues, 1 model selected
> select down
649 atoms, 652 bonds, 41 residues, 1 model selected
> select clear
Drag select of 7 residues
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> select up
355 atoms, 356 bonds, 23 residues, 1 model selected
> select clear
Alignment identifier is 1
Alignment identifier is 2
Drag select of 6 residues
> select up
1056 atoms, 1061 bonds, 65 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:451
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:451-492
12618 atoms, 12690 bonds, 756 residues, 1 model selected
Drag select of 6 residues
> select up
649 atoms, 652 bonds, 41 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> show #!3 models
> hide #!3.2 models
> hide #!3.3 models
> hide #!3.4 models
> hide #!3.6 models
> color zone #3.5 near sel distance 9.1
> color zone #3.5 near sel distance 9
> color zone #3.5 near sel distance 8.9
> color zone #3.5 near sel distance 8.8
> color zone #3.5 near sel distance 8.7
> color zone #3.5 near sel distance 8.6
> color zone #3.5 near sel distance 8.5
> color zone #3.5 near sel distance 8.4
> color zone #3.5 near sel distance 8.3
[Repeated 1 time(s)]
> color #3.5 black models
> color #3.5 #969696ff models
> color zone #3.5 near sel distance 8.3
> color zone #3.5 near sel distance 8.2
> color zone #3.5 near sel distance 8.1
> color zone #3.5 near sel distance 8
> color zone #3.5 near sel distance 7.9
> color zone #3.5 near sel distance 7.8
> color zone #3.5 near sel distance 7.7
> color zone #3.5 near sel distance 7.6
> color zone #3.5 near sel distance 7.5
> color zone #3.5 near sel distance 7.4
> color zone #3.5 near sel distance 7.3
> color zone #3.5 near sel distance 7.2
> color zone #3.5 near sel distance 7.1
> color zone #3.5 near sel distance 7
> color zone #3.5 near sel distance 6.9
> color zone #3.5 near sel distance 6.8
> color zone #3.5 near sel distance 6.7
> color zone #3.5 near sel distance 6.6
> color zone #3.5 near sel distance 6.5
> color zone #3.5 near sel distance 6.4
> color zone #3.5 near sel distance 6.3
> color zone #3.5 near sel distance 6.2
> color zone #3.5 near sel distance 6.3
> color zone #3.5 near sel distance 6.4
> hide #!2 models
> show #!2 models
> hide #!3.5 models
> show #!3.5 models
> hide #!2 models
> show #!2 models
> hide #!3.5 models
Drag select of 8 residues
Drag select of 6 residues
> select up
537 atoms, 540 bonds, 34 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499-631
9666 atoms, 9720 bonds, 18 pseudobonds, 612 residues, 2 models selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> select ~sel
353133 atoms, 355617 bonds, 36 pseudobonds, 21960 residues, 30 models selected
> cartoon hide (#!2 & sel)
> select clear
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499-631
9666 atoms, 9720 bonds, 18 pseudobonds, 612 residues, 2 models selected
> cartoon (#!2 & sel)
Drag select of 1341 residues, 35 pseudobonds
> color zone #3.5 near sel distance 6.4
> show #!3.5 models
> color zone #3.5 near sel distance 6.3
> color zone #3.5 near sel distance 6.2
> color zone #3.5 near sel distance 6.1
> color zone #3.5 near sel distance 6
> color zone #3.5 near sel distance 5.9
> color zone #3.5 near sel distance 5.8
> color zone #3.5 near sel distance 5.7
> color zone #3.5 near sel distance 5.6
> color zone #3.5 near sel distance 5.5
> color zone #3.5 near sel distance 5.4
> color zone #3.5 near sel distance 5.3
> color zone #3.5 near sel distance 5.2
> color zone #3.5 near sel distance 5.1
> color zone #3.5 near sel distance 5
> color zone #3.5 near sel distance 4.9
> show #!1 models
> color #1 #b2b2b2b4 models
> color zone #3.5 near sel distance 5
> color zone #3.5 near sel distance 5.1
> color zone #3.5 near sel distance 5.2
> color zone #3.5 near sel distance 5.3
> color zone #3.5 near sel distance 5.4
> color zone #3.5 near sel distance 5.5
> color zone #3.5 near sel distance 5.6
> color zone #3.5 near sel distance 5.7
[Repeated 1 time(s)]
> color zone #3.5 near sel distance 5.8
> color zone #3.5 near sel distance 5.9
> color zone #3.5 near sel distance 6
> color zone #3.5 near sel distance 6.1
> color zone #3.5 near sel distance 6.2
> color zone #3.5 near sel distance 6.3
> color zone #3.5 near sel distance 6.4
> color zone #3.5 near sel distance 6.5
> hide #!3.5 models
> lighting soft
> lighting simple
> select clear
> volume #1 level 383.4
> volume #1 level 327.6
> hide #!1 models
> show #!3.5 models
> show #!3.1 models
> volume #3.5 level 197.1
QWindowsWindow::setGeometry: Unable to set geometry 573x295+717+93 (frame:
609x398+699+8) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 553x231+727+147 (frame: 589x334+709+62) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 552x231+1452+294 (frame:
568x270+1444+263) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 572x295+1442+240 (frame: 588x334+1434+209) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
> hide #!3.5 models
> show #!3.5 models
No atoms selected for color zoning
[Repeated 16 time(s)]
> hide #!2 models
> show #!2 models
> hide #!3.5 models
> hide #!3 models
Drag select of 1350 residues, 36 pseudobonds
> color zone #3.5 near sel distance 4.9
> show #!3.5 models
> color zone #3.5 near sel distance 4.8
> color zone #3.5 near sel distance 4.7
> color zone #3.5 near sel distance 4.6
> color zone #3.5 near sel distance 4.5
> color zone #3.5 near sel distance 4.4
> color zone #3.5 near sel distance 4.3
> color zone #3.5 near sel distance 4.2
> color zone #3.5 near sel distance 4.1
> color zone #3.5 near sel distance 4.04
> hide #!3.5 models
> show #!3.2 models
> show #!3.3 models
> show #!3.4 models
> show #!3.5 models
> show #!3.6 models
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 33 models selected
> cartoon (#!2 & sel)
> hide #!3 models
Drag select of 11 residues
> select up
789 atoms, 790 bonds, 49 residues, 1 model selected
Drag select of 60 residues
> select up
1950 atoms, 1958 bonds, 122 residues, 1 model selected
> select up
18428 atoms, 18560 bonds, 1149 residues, 1 model selected
> select up
18650 atoms, 18783 bonds, 1163 residues, 1 model selected
> select up
20268 atoms, 20411 bonds, 1261 residues, 1 model selected
> select up
364815 atoms, 367389 bonds, 22698 residues, 1 model selected
> select down
20268 atoms, 20411 bonds, 1261 residues, 1 model selected
> select ~sel
344547 atoms, 346978 bonds, 51 pseudobonds, 21437 residues, 30 models selected
> cartoon hide (#!2 & sel)
Drag select of 14 residues
Drag select of 246 residues, 1 pseudobonds
> select up
4911 atoms, 4936 bonds, 1 pseudobond, 308 residues, 2 models selected
> select down
3891 atoms, 1 pseudobond, 246 residues, 2 models selected
Drag select of 176 residues, 1 pseudobonds
> select up
3929 atoms, 3949 bonds, 1 pseudobond, 244 residues, 2 models selected
> select down
2815 atoms, 1 pseudobond, 176 residues, 2 models selected
Drag select of 158 residues, 1 pseudobonds
Drag select of 196 residues, 1 pseudobonds
> select up
3614 atoms, 3633 bonds, 1 pseudobond, 227 residues, 2 models selected
> select up
8196 atoms, 8256 bonds, 1 pseudobond, 512 residues, 2 models selected
> select down
3614 atoms, 3633 bonds, 1 pseudobond, 227 residues, 2 models selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:1
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:1-273
74286 atoms, 74736 bonds, 18 pseudobonds, 4680 residues, 2 models selected
> color (#!2 & sel) #83ff67ff
Drag select of 197 residues
> select up
4063 atoms, 4084 bonds, 256 residues, 1 model selected
> select up
8392 atoms, 8453 bonds, 525 residues, 1 model selected
> select down
4063 atoms, 4084 bonds, 256 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:271
396 atoms, 378 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1-271
77040 atoms, 77490 bonds, 4878 residues, 1 model selected
> color sel #0c8eb5ff
Drag select of 16 residues
Drag select of 6 residues
Drag select of 23 residues
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:280
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1-280
79722 atoms, 80208 bonds, 5040 residues, 1 model selected
> color sel #ffffffff
> color sel #0c8eb5ff
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 30 models selected
> cartoon (#!2 & sel)
> undo
Drag select of 127 residues
> select up
3316 atoms, 3340 bonds, 203 residues, 1 model selected
> select up
17281 atoms, 17408 bonds, 1076 residues, 1 model selected
> select down
3316 atoms, 3340 bonds, 203 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:389
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:389-410
6138 atoms, 6192 bonds, 396 residues, 1 model selected
Drag select of 122 residues
> select up
3208 atoms, 3231 bonds, 195 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:329
396 atoms, 378 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:329-492
47592 atoms, 47970 bonds, 2952 residues, 1 model selected
> color sel #a62099ff
Drag select of 3 residues
> select up
860 atoms, 865 bonds, 51 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:639
432 atoms, 414 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:639-689
15480 atoms, 15570 bonds, 918 residues, 1 model selected
> color sel #ffffffff
> color sel #a62099ff
> select clear
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:638
180 atoms, 162 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:493-638
13599 atoms, 13689 bonds, 18 pseudobonds, 846 residues, 2 models selected
Drag select of 176 residues
> select up
3454 atoms, 3478 bonds, 210 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329
396 atoms, 378 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329-498
49518 atoms, 49932 bonds, 3060 residues, 1 model selected
> color sel #ffffffff
> color sel #a62099ff
> select /E:664
12 atoms, 11 bonds, 1 residue, 1 model selected
> select up
879 atoms, 884 bonds, 52 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:639
432 atoms, 414 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:639-690
15822 atoms, 15912 bonds, 936 residues, 1 model selected
> color sel #ffffffff
> color sel #a62099ff
Drag select of 8 residues
> select up
373 atoms, 372 bonds, 25 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:389
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:389-400
3384 atoms, 3366 bonds, 216 residues, 1 model selected
> color sel #ffffffff
> color sel #a62099ff
Drag select of 2 residues
> select up
153 atoms, 156 bonds, 10 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:401
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:401-410
2754 atoms, 2808 bonds, 180 residues, 1 model selected
> color sel #ffffffff
> color sel #a62099ff
Drag select of 3 residues
> select up
185 atoms, 185 bonds, 13 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350-362
3330 atoms, 3330 bonds, 234 residues, 1 model selected
> color sel #ffffffff
> color sel #a62099ff
Drag select of 21 residues
> select up
931 atoms, 934 bonds, 59 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704
270 atoms, 252 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704-736
9594 atoms, 9630 bonds, 594 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700
342 atoms, 324 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700-736
10674 atoms, 10710 bonds, 666 residues, 1 model selected
> color sel #ff5356ff
Drag select of 6 residues
> select up
442 atoms, 445 bonds, 28 residues, 1 model selected
Drag select of 2 residues
> select up
336 atoms, 338 bonds, 19 residues, 1 model selected
Drag select of 6 residues
> select up
442 atoms, 445 bonds, 28 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282-328
14004 atoms, 14112 bonds, 846 residues, 1 model selected
> color sel #ffffffff
> color sel #ff5356ff
Drag select of 3 residues
> select up
106 atoms, 106 bonds, 7 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273
378 atoms, 378 bonds, 18 residues, 1 model selected
> select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273-281
2412 atoms, 2430 bonds, 162 residues, 1 model selected
> color sel #ffffffff
> color sel #ff5356ff
Drag select of 24 residues
> select up
1234 atoms, 1241 bonds, 74 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:701
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:701-736
10332 atoms, 10368 bonds, 648 residues, 1 model selected
> color sel #ffffffff
> color sel #ff5356ff
Drag select of 8 residues
> select up
1234 atoms, 1241 bonds, 74 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704
270 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704-736
9594 atoms, 9630 bonds, 594 residues, 1 model selected
> color sel #ffffffff
> color sel #ff5356ff
Drag select of 17 residues
> select up
1348 atoms, 1351 bonds, 80 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282
252 atoms, 234 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282-322
12618 atoms, 12708 bonds, 738 residues, 1 model selected
> color sel #ffffffff
> color sel #ff5356ff
> show #!1 models
> color zone #3.5 near #2 distance 4.04
> show #!3 models
> hide #!3 models
> color zone #1 near #2 distance 24.24
> hide #!1 models
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 30 models selected
> cartoon (#!2 & sel)
> show #!1 models
> hide #!1 models
Drag select of 2 residues
> select up
77 atoms, 77 bonds, 6 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323
126 atoms, 108 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323-328
1386 atoms, 1386 bonds, 108 residues, 1 model selected
> color sel #ffffffff
> color sel #ff5356ff
> show #!1 models
> color zone #1 near #2 distance 24.24
> color zone #1 near #2 distance 23.24
> color zone #1 near #2 distance 22.24
> color zone #1 near #2 distance 21.24
> color zone #1 near #2 distance 20.24
> color zone #1 near #2 distance 19.24
> color zone #1 near #2 distance 18.24
> color zone #1 near #2 distance 17.24
> color zone #1 near #2 distance 16.24
> color zone #1 near #2 distance 15.24
> color zone #1 near #2 distance 14.24
> color zone #1 near #2 distance 13.24
> color zone #1 near #2 distance 12.24
> color zone #1 near #2 distance 11.24
> color zone #1 near #2 distance 10.24
> color zone #1 near #2 distance 9.24
> color zone #1 near #2 distance 9.14
> color zone #1 near #2 distance 9.04
> color zone #1 near #2 distance 9.14
> color zone #1 near #2 distance 9.24
> color zone #1 near #2 distance 9.34
> hide #!1 models
> show #!1 models
> ui mousemode right select
> select #1
3 models selected
> ui mousemode right "rotate selected models"
> ui mousemode right select
> select clear
> hide #!1 models
> show #!3 models
> hide #!3.1 models
> show #!3.1 models
> hide #!3.1 models
> show #!3.1 models
> hide #!3.2 models
> hide #!3.3 models
> hide #!3.4 models
> hide #!3.5 models
> hide #!3.6 models
> ui tool show "Segment Map"
> show #!1 models
> lighting soft
> hide #!3.1 models
> show #!3.1 models
> vop subtract #1 #3.1 minrms True
Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Minimum RMS scale factor for "PA_raw.mrc 0 #3.1" above level 341.54 is 1
> ui mousemode right select
> color zone #5 near #2 distance 24.24
> color zone #5 near #2 distance 16
[Repeated 1 time(s)]
> color zone #5 near #2 distance 17
> color zone #5 near #2 distance 18
> color zone #5 near #2 distance 19
> color zone #5 near #2 distance 20
> volume #5 level 197.9
> lighting soft
> show #!1 models
> hide #!1 models
> show #!3.1 models
> hide #!3.1 models
> hide #!2 models
> show #!2 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> color zone #5 near #2 distance 19
> color zone #5 near #2 distance 20
> color zone #5 near #2 distance 21
> color zone #5 near #2 distance 22
> color zone #5 near #2 distance 23
> ui tool show "Side View"
> hide #!2 models
> show #!2 models
> volume #5 color #b2b2b2b4
> color zone #5 near #2 distance 23
> color #5 #b2b2b2b4 models
> color zone #5 near #2 distance 23
> transparency #5.1 0
> volume #5 color #b2b2b2b4
> hide #!3 models
> show #!3 models
> hide #!3 models
> ui tool show "Model Panel"
> hide #!5 models
Drag select of 2043 residues, 6 pseudobonds
> select up
44987 atoms, 45313 bonds, 6 pseudobonds, 2772 residues, 2 models selected
> select up
95603 atoms, 96293 bonds, 6 pseudobonds, 5940 residues, 2 models selected
Drag select of 5598 residues, 12 pseudobonds
Drag select of 3816 residues, 12 pseudobonds
> select up
67696 atoms, 68187 bonds, 12 pseudobonds, 4177 residues, 2 models selected
> select up
114723 atoms, 115551 bonds, 12 pseudobonds, 7128 residues, 2 models selected
> select ~sel
250092 atoms, 251838 bonds, 36 pseudobonds, 15570 residues, 32 models selected
> cartoon hide (#!2 & sel)
Drag select of 7128 residues, 12 pseudobonds
> color zone #5 near sel distance 23
> show #!5 models
> hide #!2 models
> color zone #5 near sel distance 22
> color zone #5 near sel distance 21
> color zone #5 near sel distance 20
> color zone #5 near sel distance 19
> color zone #5 near sel distance 18
> color zone #5 near sel distance 17
> color zone #5 near sel distance 18
> color zone #5 near sel distance 18.5
[Repeated 1 time(s)]
> color zone #5 near sel distance 19.5
> volume splitbyzone #5
Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
> hide #!6.2 models
> hide #!6.3 models
> hide #!6.4 models
> hide #!6.5 models
> hide #!6.6 models
> hide #!6.7 models
> hide #!6.8 models
> show #!5 models
> vop subtract #5 #6.1 minrms True
Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Minimum RMS scale factor for "volume difference 0 #6.1" above level 197.87 is
1
> hide #!7 models
> show #!5 models
> hide #!6 models
> hide #!5 models
> show #!1 models
> color #1 #b2b2b2ff models
> show #!5 models
> hide #!1 models
> hide #!5 models
> show #!7 models
> color #7 black models
> color #7 #b4b4b4ff models
> color #7 #b3b3b3ff models
> color #7 #b0b0b0ff models
> color #7 #b1b1b1ff models
> color #7 #b3b3b3ff models
> color #7 #b0b0b0ff models
> color #7 #b1b1b1ff models
> color #7 #b3b3b3ff models
> color #7 #b5b5b5ff models
> color #7 #b4b4b4ff models
> color #7 #b0b0b0ff models
> color #7 #b1b1b1ff models
> color #7 #b2b1b1ff models
> color #7 #b2b2b1ff models
> color #7 #b2b2b2ff models
> show #!6 models
> show #!6.1 models
> hide #!6.1 models
> show #!6.2 models
> show #!6.3 models
> show #!6.4 models
> show #!6.5 models
> show #!6.6 models
> show #!6.7 models
> show #!6.8 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!6.2 models
> hide #!6.3 models
> hide #!6.4 models
> hide #!6.5 models
> hide #!6.6 models
> hide #!6.7 models
> hide #!6.8 models
> hide #!7 models
> show #!7 models
> show #!2 models
> hide #!7 models
Drag select of 488 residues, 2 pseudobonds
> select up
13811 atoms, 13905 bonds, 2 pseudobonds, 845 residues, 2 models selected
> select up
38241 atoms, 38517 bonds, 2 pseudobonds, 2376 residues, 2 models selected
> select up
38446 atoms, 38722 bonds, 2 pseudobonds, 2389 residues, 2 models selected
> select up
40535 atoms, 40821 bonds, 2 pseudobonds, 2522 residues, 2 models selected
> select up
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected
> select down
40535 atoms, 40821 bonds, 2 pseudobonds, 2522 residues, 2 models selected
> select ~sel
324280 atoms, 326568 bonds, 48 pseudobonds, 20176 residues, 51 models selected
> cartoon hide (#!2 & sel)
Drag select of 2376 residues, 4 pseudobonds
> color zone #7 near sel distance 24.24
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> lighting soft
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> lighting full
> lighting soft
> volume splitbyzone #7
Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown
at level 198, step 1, values float32
> hide #!8.1 models
> show #!8.1 models
> hide #!8.1 models
> show #!8.1 models
> hide #!8.1 models
> show #!8.1 models
> hide #!8.1 models
> show #!8.1 models
> hide #!8.1 models
> show #!7 models
> hide #!8 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> show #!8 models
> hide #!7 models
> show #!7 models
> show #!8.1 models
> hide #!8.2 models
> hide #!8.3 models
> hide #!8.4 models
> hide #!8.5 models
> hide #!8.6 models
> hide #!8.7 models
> hide #!8.8 models
> vop subtract #7 #8.1 minrms True
Opened volume difference as #9, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Minimum RMS scale factor for "volume difference 0 #8.1" above level 197.87 is
1
> show #!7 models
> vop subtract #7 #9 minrms True
Opened volume difference as #10, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Minimum RMS scale factor for "volume difference #9" above level 197.87 is 1
> close #9
QWindowsWindow::setGeometry: Unable to set geometry 538x255+711+116 (frame:
574x358+693+31) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 518x191+721+170 (frame: 554x294+703+85) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsContext::windowsProc: No Qt Window found for event 0x2e0
(WM_DPICHANGED), hwnd=0x0x11408ae.
QWindowsWindow::setGeometry: Unable to set geometry 519x192+1440+342 (frame:
535x231+1432+311) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1430+288 (frame: 555x319+1422+257) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+715+144 (frame:
575x383+697+59) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+725+198 (frame: 555x319+707+113) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1452+396 (frame:
535x255+1444+365) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1442+342 (frame: 555x319+1434+311) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
> select clear
> show #!1 models
> hide #!1 models
> show #!3 models
> show #!3.2 models
> show #!3.3 models
> show #!3.4 models
> show #!3.5 models
> show #!3.6 models
> hide #!3 models
> show #!1 models
> color zone #1 near #2 distance 24.24
> hide #!10 models
> hide #!1 models
> show #!3 models
> show #!3.1 models
> hide #!3.1 models
> show #!3.1 models
> show #!1 models
> hide #!3 models
> hide #!1 models
> show #!4 models
> hide #!4 models
> show #!5 models
> color zone #5 near #2 distance 19.5
> color zone #5 near #2 distance 20.5
> color zone #5 near #2 distance 21.5
> lighting soft
> show #!1 models
> hide #!1 models
> show #!4.1 models
> camera ortho
> hide #!3.1 models
> show #!3.1 models
> hide #!3.1 models
> hide #!3 models
> hide #!4 models
QWindowsWindow::setGeometry: Unable to set geometry 539x280+863+83 (frame:
575x383+845-2) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+873+137 (frame: 555x319+855+52) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1746+276 (frame:
535x255+1738+245) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1736+222 (frame: 555x319+1728+191) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+868+111 (frame:
575x383+850+26) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+878+165 (frame: 555x319+860+80) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1758+330 (frame:
535x255+1750+299) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1748+276 (frame: 555x319+1740+245) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+874+138 (frame:
575x383+856+53) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+884+192 (frame: 555x319+866+107) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1770+384 (frame:
535x255+1762+353) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1760+330 (frame: 555x319+1752+299) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+880+165 (frame:
575x383+862+80) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+890+219 (frame: 555x319+872+134) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1782+438 (frame:
535x255+1774+407) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1772+384 (frame: 555x319+1764+353) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+886+192 (frame:
575x383+868+107) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+896+246 (frame: 555x319+878+161) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1794+492 (frame:
535x255+1786+461) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1784+438 (frame: 555x319+1776+407) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+892+219 (frame:
575x383+874+134) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+902+273 (frame: 555x319+884+188) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1806+546 (frame:
535x255+1798+515) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1796+492 (frame: 555x319+1788+461) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+898+246 (frame:
575x383+880+161) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+908+300 (frame: 555x319+890+215) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1818+600 (frame:
535x255+1810+569) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1808+546 (frame: 555x319+1800+515) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+904+273 (frame:
575x383+886+188) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+914+327 (frame: 555x319+896+242) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1830+654 (frame:
535x255+1822+623) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1820+600 (frame: 555x319+1812+569) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+910+300 (frame:
575x383+892+215) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+920+354 (frame: 555x319+902+269) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1842+708 (frame:
535x255+1834+677) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1832+654 (frame: 555x319+1824+623) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+916+327 (frame:
575x383+898+242) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+926+381 (frame: 555x319+908+296) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1854+762 (frame:
535x255+1846+731) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1844+708 (frame: 555x319+1836+677) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+922+354 (frame:
575x383+904+269) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+932+408 (frame: 555x319+914+323) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1866+816 (frame:
535x255+1858+785) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1856+762 (frame: 555x319+1848+731) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+928+381 (frame:
575x383+910+296) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+938+435 (frame: 555x319+920+350) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1878+870 (frame:
535x255+1870+839) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1868+816 (frame: 555x319+1860+785) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+934+408 (frame:
575x383+916+323) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+944+462 (frame: 555x319+926+377) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1890+924 (frame:
535x255+1882+893) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1880+870 (frame: 555x319+1872+839) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+940+435 (frame:
575x383+922+350) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+950+489 (frame: 555x319+932+404) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1902+978 (frame:
535x255+1894+947) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 539x280+1892+924 (frame: 555x319+1884+893) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+946+462 (frame:
575x383+928+377) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+956+516 (frame: 555x319+938+431) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsContext::windowsProc: No Qt Window found for event 0x2e0
(WM_DPICHANGED), hwnd=0x0x4a10e2.
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1914+1032 (frame:
535x255+1906+1001) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1904+978 (frame: 555x319+1896+947)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+952+489 (frame:
575x383+934+404) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+962+543 (frame: 555x319+944+458) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1926+1086 (frame:
535x255+1918+1055) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1916+1032 (frame: 555x319+1908+1001)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+958+516 (frame:
575x383+940+431) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+968+570 (frame: 555x319+950+485) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1938+1140 (frame:
535x255+1930+1109) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1928+1086 (frame: 555x319+1920+1055)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+964+543 (frame:
575x383+946+458) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+974+597 (frame: 555x319+956+512) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1950+1194 (frame:
535x255+1942+1163) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1940+1140 (frame: 555x319+1932+1109)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+970+570 (frame:
575x383+952+485) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+980+624 (frame: 555x319+962+539) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1962+1248 (frame:
535x255+1954+1217) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1952+1194 (frame: 555x319+1944+1163)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+976+597 (frame:
575x383+958+512) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+986+651 (frame: 555x319+968+566) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1974+1302 (frame:
535x255+1966+1271) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1964+1248 (frame: 555x319+1956+1217)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+982+624 (frame:
575x383+964+539) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+992+678 (frame: 555x319+974+593) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1986+1356 (frame:
535x255+1978+1325) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1976+1302 (frame: 555x319+1968+1271)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+988+651 (frame:
575x383+970+566) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+998+705 (frame: 555x319+980+620) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+1998+1410 (frame:
535x255+1990+1379) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+1988+1356 (frame: 555x319+1980+1325)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+994+678 (frame:
575x383+976+593) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1004+732 (frame: 555x319+986+647) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsContext::windowsProc: No Qt Window found for event 0x2e0
(WM_DPICHANGED), hwnd=0x0xe52e22.
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2010+1464 (frame:
535x255+2002+1433) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+2000+1410 (frame: 555x319+1992+1379)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+1000+705 (frame:
575x383+982+620) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1010+759 (frame: 555x319+992+674) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2022+1518 (frame:
535x255+2014+1487) on QWidgetWindow/"QDockWidgetClassWindow" on "LG
ULTRAGEAR". Resulting geometry: 539x280+2012+1464 (frame: 555x319+2004+1433)
margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+1006+732 (frame:
575x383+988+647) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1016+786 (frame: 555x319+998+701) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsContext::windowsProc: No Qt Window found for event 0x2e0
(WM_DPICHANGED), hwnd=0x0xa32c1e.
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2034+1572 (frame:
535x255+2026+1541) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 539x280+2024+1518 (frame: 555x319+2016+1487) margins: 8,
31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+1012+759 (frame:
575x383+994+674) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1022+813 (frame: 555x319+1004+728) margins: 18,
85, 18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2046+1626 (frame:
535x255+2038+1595) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 539x280+2036+1572 (frame: 555x319+2028+1541) margins: 8,
31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+1018+786 (frame:
575x383+1000+701) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1028+840 (frame: 555x319+1010+755) margins: 18,
85, 18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2058+1680 (frame:
535x255+2050+1649) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 539x280+2048+1626 (frame: 555x319+2040+1595) margins: 8,
31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+1024+813 (frame:
575x383+1006+728) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1034+867 (frame: 555x319+1016+782) margins: 18,
85, 18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2070+1734 (frame:
535x255+2062+1703) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 539x280+2060+1680 (frame: 555x319+2052+1649) margins: 8,
31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255)))
QWindowsWindow::setGeometry: Unable to set geometry 539x280+1030+840 (frame:
575x383+1012+755) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 519x216+1040+894 (frame: 555x319+1022+809) margins: 18,
85, 18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 519x216+2082+1788 (frame:
535x255+2074+1757) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 539x280+2072+1734 (frame: 555x319+2064+1703) margins: 8,
31, 8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255)))
> ui tool show "Model Panel"
[Repeated 1 time(s)]
> hide #!2 models
> hide #!6 models
> show #!6 models
> show #!6.1 models
> hide #!6.1 models
> show #!6.2 models
> show #!6.3 models
> show #!6.4 models
> show #!6.5 models
> show #!6.6 models
> show #!6.7 models
> show #!6.8 models
> show #!6.1 models
> hide #!6.1 models
> hide #!8 models
> show #!7 models
> hide #!7 models
> show #!7 models
> show #!1 models
> color single #1
> hide #!1 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!7 models
> show #!7 models
> hide #!6 models
> hide #!7 models
> show #!7 models
> show #!1 models
> hide #!1 models
> show #!5 models
> color single #5
> color #5 #b2b2b2ff models
QWindowsWindow::setGeometry: Unable to set geometry 504x494+714+123 (frame:
540x597+696+38) on QWidgetWindow/"QDockWidgetClassWindow" on "XGIMI TV".
Resulting geometry: 484x430+724+177 (frame: 520x533+706+92) margins: 18, 85,
18, 18 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319)))
QWindowsWindow::setGeometry: Unable to set geometry 483x429+1446+354 (frame:
499x468+1438+323) on QWidgetWindow/"QDockWidgetClassWindow" on "LG ULTRAGEAR".
Resulting geometry: 503x493+1436+300 (frame: 519x532+1428+269) margins: 8, 31,
8, 8 minimum size: 142x72 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111)))
> hide #!5 models
> show #!5 models
> hide #!7 models
> show #!7 models
> show #!6 models
> hide #!6 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!5 models
> hide #!7 models
> show #!7 models
> show #!2 models
> hide #!7 models
Drag select of 2376 residues, 4 pseudobonds
> color zone #7 near sel distance 24.24
> show #!7 models
> color zone #7 near sel distance 23.24
> color zone #7 near sel distance 22.24
> color zone #7 near sel distance 21.24
> color zone #7 near sel distance 20.24
> color zone #7 near sel distance 19.24
> color zone #7 near sel distance 18.24
> color zone #7 near sel distance 17.24
> color zone #7 near sel distance 16.24
> color zone #7 near sel distance 15.24
> color zone #7 near sel distance 14.24
> color zone #7 near sel distance 15.24
> color zone #7 near sel distance 16.24
> color zone #7 near sel distance 17.24
> color zone #7 near sel distance 18.24
> color zone #7 near sel distance 19.24
> color zone #7 near sel distance 20.24
> color zone #7 near sel distance 21.24
> color zone #7 near sel distance 22.24
> color zone #7 near sel distance 23.24
> color zone #7 near sel distance 24.24
> color zone #7 near sel distance 25.24
> color zone #7 near sel distance 26.24
> color zone #7 near sel distance 27.24
> color zone #7 near sel distance 28.24
> color zone #7 near sel distance 29.24
> color zone #7 near sel distance 30.24
> color zone #7 near sel distance 31.24
> color zone #7 near sel distance 32.24
> color zone #7 near sel distance 33.24
> color zone #7 near sel distance 34.24
> color zone #7 near sel distance 35.24
> color zone #7 near sel distance 36.24
> color zone #7 near sel distance 35.24
> color zone #7 near sel distance 34.24
> color zone #7 near sel distance 33.24
> color zone #7 near sel distance 32.24
> color zone #7 near sel distance 31.24
> color zone #7 near sel distance 30.24
> color zone #7 near sel distance 29.24
> color zone #7 near sel distance 28.24
> color zone #7 near sel distance 27.24
> color zone #7 near sel distance 26.24
> color zone #7 near sel distance 25.24
> color zone #7 near sel distance 24.24
> color zone #7 near sel distance 23.24
> color zone #7 near sel distance 22.24
> color zone #7 near sel distance 21.24
> color zone #7 near sel distance 20.24
> color zone #7 near sel distance 19.24
> color zone #7 near sel distance 18.24
> color zone #7 near sel distance 17.24
> color zone #7 near sel distance 16.24
> color zone #7 near sel distance 15.24
> color zone #7 near sel distance 14.24
> color zone #7 near sel distance 13.24
> color zone #7 near sel distance 14.24
> color zone #7 near sel distance 15.24
> show #!5 models
> select add #1
38241 atoms, 4 pseudobonds, 2376 residues, 4 models selected
> select subtract #1
38241 atoms, 4 pseudobonds, 2376 residues, 2 models selected
> show #!1 models
> lighting soft
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!7 models
> hide #!2 models
> volume #5 level 127.6
> open "C:/Users/kfzr5/OneDrive - Florida State
> University/Drp1/volumes/PAorig/cryosparc_P69_J337_volume_map.mrc"
Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel
4.04, shown at level 0.579, step 1, values float32
> show #!10 models
> hide #!10 models
> volume #9 level 0.4474
> hide #!9 models
> hide #7.1 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!3.2 models
> hide #!3.3 models
> hide #!3.4 models
> hide #!3.5 models
> hide #!3.6 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!9 models
> volume #9 level 0.3333
> show #!2 models
> color zone #9 near sel distance 24.24
> color zone #9 near sel distance 23.24
> color zone #9 near sel distance 22.24
> color zone #9 near sel distance 21.24
> color zone #9 near sel distance 20.24
> color zone #9 near sel distance 19.24
> color zone #9 near sel distance 18.24
> color zone #9 near sel distance 17.24
> color zone #9 near sel distance 16.24
> color zone #9 near sel distance 15.24
> color zone #9 near sel distance 14.24
> color zone #9 near sel distance 13.24
> color zone #9 near sel distance 12.24
> color zone #9 near sel distance 11.24
> color zone #9 near sel distance 12.24
> hide #!2 models
> color zone #9 near sel distance 11.24
> color zone #9 near sel distance 12.24
> hide #!9 models
> show #!10 models
> hide #!10 models
> show #!10 models
> close #10
> show #!9 models
> lighting soft
> color zone #9 near #2 distance 12.24
> color zone #9 near #2 distance 13.24
> color zone #9 near #2 distance 14.24
> color zone #9 near #2 distance 15.24
> color zone #9 near #2 distance 16.24
> color zone #9 near #2 distance 17.24
> color zone #9 near #2 distance 18.24
> color zone #9 near #2 distance 19.24
> color zone #9 near #2 distance 20.24
> color zone #9 near #2 distance 21.24
> color zone #9 near #2 distance 22.24
> color zone #9 near #2 distance 23.24
> color zone #9 near #2 distance 24.24
> color zone #9 near #2 distance 25.24
> color zone #9 near #2 distance 26.24
> color zone #9 near #2 distance 27.24
> color zone #9 near #2 distance 28.24
> color zone #9 near #2 distance 29.24
> color zone #9 near #2 distance 30.24
> color zone #9 near #2 distance 31.24
> color zone #9 near #2 distance 32.24
> color zone #9 near #2 distance 20
[Repeated 1 time(s)]
> color zone #9 near #2 distance 14
[Repeated 1 time(s)]
> hide #!9 models
> show #!2 models
> hide #!2 models
> show #!9 models
> color zone #9 near #2 distance 22
[Repeated 1 time(s)]
> color zone #9 near #2 distance 23
> color zone #9 near #2 distance 26
[Repeated 1 time(s)]
> volume splitbyzone #9
Opened cryosparc_P69_J337_volume_map.mrc 0 as #10.1, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 1 as #10.2, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 2 as #10.3, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 3 as #10.4, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 4 as #10.5, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 5 as #10.6, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 6 as #10.7, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
Opened cryosparc_P69_J337_volume_map.mrc 7 as #10.8, grid size 224,224,224,
pixel 4.04, shown at level 0.333, step 1, values float32
> hide #!10.2 models
> hide #!10.3 models
> hide #!10.4 models
> hide #!10.5 models
> hide #!10.6 models
> hide #!10.7 models
> hide #!10.8 models
> show #!9 models
> vop subtract #9 #10.1 minrms True
Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Minimum RMS scale factor for "cryosparc_P69_J337_volume_map.mrc 0 #10.1" above
level 0.33332 is 1
> close #10
> color zone #11 near #2 distance 24.24
> color #11 #b2cc99ff models
> color #11 #b2b2b2ff models
> color zone #11 near sel distance 24.24
> color zone #11 near sel distance 14
[Repeated 1 time(s)]
> color zone #11 near sel distance 13
> lighting soft
[Repeated 1 time(s)]
> volume #11 level 0.3493
> show #!2 models
> volume #11 level 0.311
> volume #11 level 0.3525
> lighting simple
> lighting soft
> set bgColor white
> hide #!11 models
> show #!11 models
> hide #!11 models
> show #!11 models
> color zone #11 near sel distance 13
[Repeated 3 time(s)]
> volume #11 level 0.3142
> volume #11 level 0.2982
> color zone #11 near sel distance 13
> lighting soft
> hide #!2 models
> volume #11 level 0.3876
> color zone #11 near sel distance 13
> volume #11 level 0.2759
> color zone #11 near sel distance 13
[Repeated 1 time(s)]
> color single #11
> show #!2 models
> color #11 #b2b2b2b2 models
> select clear
> lighting simple
> lighting soft
> lighting full
> lighting simple
No atoms selected for color zoning
> hide #!11 models
Drag select of 2207 residues, 2 pseudobonds
> color zone #11 near sel distance 13
> show #!11 models
> hide #!2 models
> color zone #11 near sel distance 13
> color single #11
> show #!2 models
> hide #!2 models
> color #11 #b2b2b2ff models
> color zone #11 near sel distance 13
> color single #11
> show #!2 models
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 74 models selected
> cartoon (#!2 & sel)
> hide #!11 models
> show #!11 models
> hide #!11 models
Drag select of 23 residues, 1 pseudobonds
> select up
972 atoms, 976 bonds, 1 pseudobond, 61 residues, 2 models selected
> select up
20464 atoms, 20608 bonds, 1 pseudobond, 1274 residues, 2 models selected
> select down
972 atoms, 976 bonds, 1 pseudobond, 61 residues, 2 models selected
Drag select of 37 residues
> select up
1298 atoms, 1304 bonds, 82 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> color zone #11 near sel distance 13
> select add #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected
> select subtract #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> select add #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected
> select subtract #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> select add #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected
> select subtract #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> select add #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected
> select subtract #11
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> show #!11 models
> hide #!2 models
> color #11.1 #b2b2b2b2
> color zone #11 near sel distance 13
> volume #11 level 0.2408
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> color zone #11 near sel distance 12
> color zone #11 near sel distance 11
> color zone #11 near sel distance 10
> color zone #11 near sel distance 9.9
> color zone #11 near sel distance 9.8
> color zone #11 near sel distance 9.7
> color zone #11 near sel distance 9.6
> color zone #11 near sel distance 9.5
> color zone #11 near sel distance 9.4
> color zone #11 near sel distance 9.3
> color zone #11 near sel distance 9.2
> color zone #11 near sel distance 9.1
> color zone #11 near sel distance 9
> color zone #11 near sel distance 8.9
> color zone #11 near sel distance 8.8
> color zone #11 near sel distance 8.7
> color zone #11 near sel distance 8.6
> color zone #11 near sel distance 8.5
> color zone #11 near sel distance 8.4
> color zone #11 near sel distance 8.3
> color zone #11 near sel distance 8.2
> color zone #11 near sel distance 8.1
> color zone #11 near sel distance 8
> color zone #11 near sel distance 7.9
> color zone #11 near sel distance 7.8
> color zone #11 near sel distance 7.7
> color zone #11 near sel distance 7.6
> color zone #11 near sel distance 7.5
> color zone #11 near sel distance 7.4
> color zone #11 near sel distance 7.3
> volume #11 level 0.3461
> volume #11 level 0.4865
> color zone #11 near sel distance 7.3
[Repeated 1 time(s)]
> color zone #11 near sel distance 7.2
> color zone #11 near sel distance 7.1
> color zone #11 near sel distance 7
> color zone #11 near sel distance 6.9
> color zone #11 near sel distance 6.8
> color zone #11 near sel distance 6.7
> color zone #11 near sel distance 6.6
> color zone #11 near sel distance 6.5
> color zone #11 near sel distance 6.4
> color zone #11 near sel distance 6.3
> color zone #11 near sel distance 6.2
> color zone #11 near sel distance 6.1
> color zone #11 near sel distance 6
> color zone #11 near sel distance 5.9
> color zone #11 near sel distance 5.8
> color zone #11 near sel distance 5.7
> color zone #11 near sel distance 5.6
> color zone #11 near sel distance 5.5
> color zone #11 near sel distance 5.4
> color zone #11 near sel distance 5.3
> color zone #11 near sel distance 5.2
> color zone #11 near sel distance 5.1
> color zone #11 near sel distance 5
[Repeated 3 time(s)]
> show #!1 models
> lighting soft
> color #1 #b2b2b296 models
> lighting soft
> lighting simple
> hide #!1 models
> show #!9 models
> color single #9
> color #9 #b2b2b296 models
> lighting soft
> lighting full
> lighting simple
> volume #9 level 0.2504
> volume #9 level 0.2331
> show #!2 models
> volume #9 level 0.2676
> select clear
> color single #9
> hide #!11 models
> volume #9 level 0.2469
> volume #9 level 0.1812
> hide #!2 models
> show #!11 models
> volume #9 color #b2b2b2
> volume #9 level 0.2192
> volume #9 level 0.24
> volume #9 level 0.2469
> lighting soft
[Repeated 8 time(s)]
> lighting simple
> lighting soft
> show #!2 models
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499
252 atoms, 252 bonds, 18 residues, 1 model selected
> select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638
11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected
> color zone #11 near sel distance 5
> volume #11 level 0.4163
> volume #11 level 0.3206
> color zone #11 near sel distance 5.1
> color zone #11 near sel distance 5.2
> color zone #11 near sel distance 5.3
> color zone #11 near sel distance 5.4
> color zone #11 near sel distance 5.5
> color zone #11 near sel distance 5.6
> color zone #11 near sel distance 5.7
> color zone #11 near sel distance 5.8
> color zone #11 near sel distance 5.9
> color zone #11 near sel distance 6
> color zone #11 near sel distance 6.1
> color zone #11 near sel distance 6.2
> color zone #11 near sel distance 6.3
> color zone #11 near sel distance 6.4
> color zone #11 near sel distance 6.5
> color zone #11 near sel distance 6.6
> color zone #11 near sel distance 6.7
> color zone #11 near sel distance 6.8
> color zone #11 near sel distance 6.9
[Repeated 1 time(s)]
> volume #11 level 0.2184
> color zone #9 near sel distance 24.24
> lighting soft
> hide #!2 models
> color zone #9 near sel distance 23.24
> color zone #9 near sel distance 22.24
> color zone #9 near sel distance 21.24
> color zone #9 near sel distance 20.24
> color zone #9 near sel distance 19.24
> color zone #9 near sel distance 18.24
> color zone #9 near sel distance 17.24
> color zone #9 near sel distance 16.24
> color zone #9 near sel distance 15.24
> color zone #9 near sel distance 14.24
> color zone #9 near sel distance 13.24
> color zone #9 near sel distance 12.24
> color zone #9 near sel distance 11.24
> color zone #9 near sel distance 10.24
> color zone #9 near sel distance 9.24
> color zone #9 near sel distance 9.14
> color zone #9 near sel distance 9.04
> show #!2 models
> select ~sel
353133 atoms, 355617 bonds, 36 pseudobonds, 21960 residues, 74 models selected
> cartoon hide (#!2 & sel)
> hide #!9 models
> show #!9 models
> hide #!9 models
> ui mousemode right select
Drag select of 41 residues, 1 pseudobonds
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.99985,-0.0010658,0.01718,-6.6022,0.0012236,0.99996,-0.0091774,3.1387,-0.01717,0.0091971,0.99981,5.8949
> view matrix models
> #2,0.99984,0.00043631,0.01773,-7.4815,-0.00058116,0.99997,0.0081657,-3.052,-0.017726,-0.0081747,0.99981,13.797
> show #!9 models
> view matrix models
> #2,0.99948,0.023561,0.022146,-19.206,-0.0219,0.99713,-0.072493,43.972,-0.023791,0.07197,0.99712,-16.6
> undo
[Repeated 4 time(s)]
> select clear
[Repeated 1 time(s)]
No atoms selected for color zoning
[Repeated 2 time(s)]
> hide #!9 models
Drag select of 41 residues, 1 pseudobonds
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> cd "C:/Users/kfzr5/OneDrive - Florida State University/data"
Current working directory is: C:\Users\kfzr5\OneDrive - Florida State
University\data
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230911_lattice.cxs"
——— End of log from Mon Sep 11 08:12:07 2023 ———
opened ChimeraX session
> ui tool show "Side View"
> show #!1 models
> hide #!1 models
Drag select of 738 residues, 18 pseudobonds
> select up
184176 atoms, 185472 bonds, 18 pseudobonds, 11466 residues, 2 models selected
> select up
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 72 models selected
> cartoon style (#!2 & sel) modeHelix tube sides 20
> cartoon (#!2 & sel)
> show #!1 models
> color #1 #b2b2b2ff models
> select clear
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230911_lattice.cxs"
——— End of log from Sun Oct 8 12:28:18 2023 ———
opened ChimeraX session
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230911_lattice.cxs"
——— End of log from Sun Oct 8 14:12:37 2023 ———
opened ChimeraX session
> hide #!1 models
Drag select of 2053 residues, 7 pseudobonds
> select up
38795 atoms, 39071 bonds, 7 pseudobonds, 2387 residues, 2 models selected
> select up
76482 atoms, 77034 bonds, 7 pseudobonds, 4752 residues, 2 models selected
> select up
76892 atoms, 77444 bonds, 7 pseudobonds, 4778 residues, 2 models selected
> select up
81070 atoms, 81642 bonds, 7 pseudobonds, 5044 residues, 2 models selected
> select up
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected
> select down
81070 atoms, 81642 bonds, 7 pseudobonds, 5044 residues, 2 models selected
> select ~sel
283745 atoms, 285747 bonds, 42 pseudobonds, 17654 residues, 72 models selected
> cartoon hide (#!2 & sel)
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #2 distance 24.24
> hide #!1 models
Drag select of 5396 residues, 12 pseudobonds
> color zone #1 near #2 distance 24.24
> show #!1 models
> color zone #1 near sel distance 24.24
> color zone #1 near sel distance 23.24
> color zone #1 near sel distance 22.24
> color zone #1 near sel distance 21.24
> color zone #1 near sel distance 20.24
> color zone #1 near sel distance 19.24
> color zone #1 near sel distance 18.24
> color zone #1 near sel distance 17.24
> color zone #1 near sel distance 16.24
> color zone #1 near sel distance 15.24
> color zone #1 near sel distance 14.24
> color zone #1 near sel distance 13.24
> color zone #1 near sel distance 12.24
> ui tool show "Model Panel"
> ui tool show "Side View"
> volume splitbyzone #1
Opened PA_raw.mrc 0 as #10.1, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 1 as #10.2, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 2 as #10.3, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 3 as #10.4, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 4 as #10.5, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 5 as #10.6, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 6 as #10.7, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
Opened PA_raw.mrc 7 as #10.8, grid size 224,224,224, pixel 4.04, shown at
level 328, step 1, values float32
> hide #!10.2 models
> hide #!10.8 models
> hide #!10.7 models
> hide #!10.6 models
> hide #!10.5 models
> hide #!10.4 models
> hide #!10.3 models
> show #!1 models
> vop subtract #1 #10.1 minrms True
Opened volume difference as #12, grid size 224,224,224, pixel 4.04, shown at
step 1, values float32
Minimum RMS scale factor for "PA_raw.mrc 0 #10.1" above level 327.6 is 1
> color #12 black models
> color #12 #acacacff models
> color #12 #b3b3b3ff models
> color #12 #b2b3b3ff models
> color #12 #b2b2b3ff models
> color #12 #b2b2b2ff models
> hide #!10 models
> hide #!12 models
> show #!10 models
> show #!10.1 models
> hide #!10.1 models
> close #10
> show #!1 models
> hide #!1 models
> show #!11 models
> show #!3 models
> hide #!3 models
> ui tool show "Side View"
[Repeated 1 time(s)]
> show #!3 models
> hide #!11 models
> show #!3.1 models
> hide #!3.1 models
> close #3
> show #!4 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!4.1 models
> show #!4.1 models
> close #4
> show #!5 models
> hide #!5 models
> show #!6 models
> hide #!6 models
> close #6
> show #!7 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> close #7
> show #!8 models
> show #!8.1 models
> hide #!8.1 models
> show #!8.1 models
> close #8
> show #!11 models
> hide #!11 models
> show #!12 models
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230911_lattice.cxs"
——— End of log from Sun Oct 8 14:18:16 2023 ———
opened ChimeraX session
> show #!1 models
> hide #!12 models
> ui tool show "Color Zone"
> color zone #1 near #2 distance 4.04
> volume splitbyzone #1
Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 6 as #3.7, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
Opened PA_raw.mrc 7 as #3.8, grid size 224,224,224, pixel 4.04, shown at level
328, step 1, values float32
> close #3
> show #!1 models
> color single #1
> turn y 2 180
> turn y 2 90
> ui tool show "Side View"
> lighting soft
> camera ortho
> turn y 2 90
> turn y 2 1
[Repeated 13 time(s)]
> turn y -2 1
[Repeated 5 time(s)]
> turn 1 360
Expected an axis vector or a keyword
> turn y 1 360
> volume #1 level 302.8
> view name main
> ui tool show Log
> lighting shadows true intensity 0.5
> lighting soft
> set bgColor white
> lighting flat
> volume #1 level 389.3
> lighting soft
> turn y 360
> turn y 180
[Repeated 1 time(s)]
> view name main
> volume #1 level 321.3
> view name tetramer
> view main
> view tetramer 200
> volume #1 level 445
> volume #1 level 339.9
> view name focus
> view main
> view tetramer 200
> view focus 200
> view main
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> view focus 200
> view main
[Repeated 2 time(s)]
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> view focus 200
> view main
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> view focus 200
> view main
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> wait 200
> view focus 200
> view main
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> wait 200
> view focus 50
> view main
[Repeated 1 time(s)]
> turn y 180
[Repeated 1 time(s)]
> turn y 1
[Repeated 2 time(s)]
> view name main
> view main
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> wait 200
> view focus 50
> view main
> wait
wait requires a frame count argument unless motion is in progress
> view tetramer 200
> wait 200
> view focus 50
> clip off
> turn y 180
> camera ortho
> turn y 180
> view name front
> view front 10
> wait 10
> view tetramer 200
> wait 200
> view focus 50
> view name focus
> view front 10
> wait 10
> view tetramer 200
> wait 200
> view focus 50
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
Drag select of 1816 residues, 1 pseudobonds
> select up
33349 atoms, 33580 bonds, 1 pseudobond, 2062 residues, 2 models selected
> select up
57815 atoms, 58228 bonds, 1 pseudobond, 3598 residues, 2 models selected
> select up
58130 atoms, 58544 bonds, 1 pseudobond, 3618 residues, 2 models selected
> select up
60802 atoms, 61231 bonds, 1 pseudobond, 3783 residues, 2 models selected
> select up
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected
> select down
60802 atoms, 61231 bonds, 1 pseudobond, 3783 residues, 2 models selected
> cartoon style (#!2 & sel) xsection oval modeHelix default
> show #!1 models
> hide #!2 models
> movie record
> video view front 10; wait 10; turn y 3 120; wait 120; view tetramer 200;
> wait 200; view focus 50; hide #1; show #2 models; movie encode tetramer.mp4
Unknown command: video view front 10; wait 10; turn y 3 120; wait 120; view
tetramer 200; wait 200; view focus 50; hide #1; show #2 models; movie encode
tetramer.mp4
> movie record
Already recording a movie
> movie stop
> movie record
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 200
> wait 200
> view focus 50
> hide #1
> show #2 models
> movie encode tetramer.mp4
Movie saved to tetramer.mp4
> movie record
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 200
> wait 200
> view focus 50
> wait 50
> hide #1
> show #2 models
> movie encode tetramer.mp4
Movie saved to tetramer.mp4
> show #!1 models
> hide #!2 models
> view front
> clip off
> show #!2 models
> hide #!1 models
> show #!1 models
> show #1.1 models
> hide #!2 models
> view front
> movie record
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 200
> wait 200
> view focus 50
> wait 50
> hide #1
> show #2 models
> wait 60
> movie encode tetramer.mp4
Movie saved to tetramer.mp4
> select clear
> show #1.1 models
> view front
> hide #!2 models
> movie record
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 60
> wait 90
> view focus 40
> wait 60
> hide #1
> show #2 models
> wait 60
> movie encode tetramer.mp4
Movie saved to tetramer.mp4
> show #1.1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> volume #1 level 234.8
> volume #1 level 278.1
> volume #1 level 185.3
> volume #1 level 284.2
> volume #1 level 377
> hide #!1 models
> show #!9 models
> volume #9 level 0.2999
> volume #9 level 0.3918
> volume #9 level 0.3953
> volume #9 level 0.5296
> show #!1 models
> hide #!9 models
> view name stalkslice
> view stalkslice
> view name stalksliceG
> clip off
> turn y 180
[Repeated 1 time(s)]
> view name filament
> view filament
> wait
wait requires a frame count argument unless motion is in progress
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view filament
> wait 20
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view filament
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view filament
> view stalkslice 120
> wait 120
> view stalksliceG 20
> wait 20
> view filament
> view stalkslice 120
> wait 120
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 60
> view stalkslice 120
> wait 120
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 60
> view stalkslice 120
> wait 180
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 60
> view stalkslice 200
> wait 180
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 60
> view stalkslice 200
> wait 300
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 80
> view stalkslice 200
> wait 300
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 80
> view stalkslice 300
> wait 300
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait
> view stalkslice 300
> wait 300
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view front
> wait 10
> view filament 60
> wait 60
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 60
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 60
> wait
wait requires a frame count argument unless motion is in progress
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> view stalkslice 60
> wait 60
> view stalksliceG 20
> wait 20
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> view stalkslice 60
> wait 120
> view stalksliceG 20
> wait 20
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> view stalkslice 60
> wait 120
> view stalksliceG 60
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 60
> wait 90
> view focus 40
> wait 60
> hide #1
> show #2 models
> wait 60
> show #!1 models
> show #1.1 models
> hide #!2 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> view stalkslice 60
> wait 120
> view stalksliceG 60
> view stalkfocus
Expected an objects specifier or a view name or a keyword
> view stalkslice
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> view stalkslice 60
> wait 120
> show #2 models
> hide #1
> wait 60
> show #1
> view stalksliceG 60
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> show #1
> view stalksliceG 60
> hide #1
> show #!1 models
> show #1.1 models
> hide #!2 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> show #1.1
> view stalksliceG 60
> hide #1
> show #!1 models
> show #1.1 models
> hide #!2 models
> hide #2.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> volume show #1.1; view stalksliceG 60; hide #1
Expected a keyword
> show #1.1 models
> hide #!2 models
> hide #2.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> volume #1.1 show
No volumes specified
> show #!1 models
> hide #!2 models
> show #1.1 models
> hide #2.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> volume #1 show
> view stalksliceG 60
> hide #1
> volume show
> hide #!1 models
> hide #2.1 models
> hide #!2 models
> hide #!5 models
> hide #!9 models
> hide #!11 models
> hide #!12 models
> show #!1 models
> show #1.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> volume show #1; view stalksliceG 60; hide #1
Expected a keyword
> show #!1 models
> show #1.1 models
> hide #!2 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1
> wait 60
> show #1.1 models
> view stalksliceG 60
> hide #1
> show #1.1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1.1 models
> hide #!1 models
> show #1.1 models
> hide #!1.1 models
> hide #!1 models
> lookingglass
Failed to initialize HoloPlay: Interprocess pipe broken
Did not find any connected LookingGlass display
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\looking_glass\lookingglass.py", line 394, in event
self._render()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\looking_glass\lookingglass.py", line 406, in _render
mvwin = r.use_shared_context(self)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 542, in use_shared_context
self.make_current()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 491, in make_current
return self._opengl_context.make_current()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 112, in make_current
raise OpenGLError("Could not make graphics context current")
chimerax.graphics.opengl.OpenGLError: Could not make graphics context current
chimerax.graphics.opengl.OpenGLError: Could not make graphics context current
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 112, in make_current
raise OpenGLError("Could not make graphics context current")
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\looking_glass\lookingglass.py", line 394, in event
self._render()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\looking_glass\lookingglass.py", line 406, in _render
mvwin = r.use_shared_context(self)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 542, in use_shared_context
self.make_current()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 491, in make_current
return self._opengl_context.make_current()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 112, in make_current
raise OpenGLError("Could not make graphics context current")
chimerax.graphics.opengl.OpenGLError: Could not make graphics context current
chimerax.graphics.opengl.OpenGLError: Could not make graphics context current
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 112, in make_current
raise OpenGLError("Could not make graphics context current")
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\looking_glass\lookingglass.py", line 398, in _frame_drawn
self._render()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\looking_glass\lookingglass.py", line 406, in _render
mvwin = r.use_shared_context(self)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 542, in use_shared_context
self.make_current()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 491, in make_current
return self._opengl_context.make_current()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 112, in make_current
raise OpenGLError("Could not make graphics context current")
chimerax.graphics.opengl.OpenGLError: Could not make graphics context current
Error processing trigger "frame drawn":
chimerax.graphics.opengl.OpenGLError: Could not make graphics context current
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 112, in make_current
raise OpenGLError("Could not make graphics context current")
See log for complete Python traceback.
> show #1.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> hide #1
> show #1.1 models
> hide #!1 models
> hide #!2 models
> show #!1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> hide #1
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> show #!1 models
> hide #!2 models
> show #1.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> show #!1 models
> hide #!1 models
> save "C:/Users/kfzr5/OneDrive - Florida State
> University/data/20230911_lattice.cxs"
> show #!1 models
> show #1.1 models
> view stalksliceG
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> view name stalksliceG
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> show #!1 models
> hide #!2 models
> show #1.1 models
> movie record
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> movie encode stalk.mp4
Movie saved to stalk.mp4
> view stalkslice
> show #!1 models
> show #1.1 models
> clip near -0.2
[Repeated 17 time(s)]
> clip far 0.2
[Repeated 7 time(s)]
> view name stalkslice
> movie record
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> movie encode stalk.mp4
Movie saved to stalk.mp4
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> view stalksliceG
> show #!1 models
> show #1.1 models
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait
> hide #1
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait
wait requires a frame count argument unless motion is in progress
> view stalksliceG 60
> wait 60
> hide #1
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 90
> view stalkslice 60
> wait 90
> show #2 models
> hide #1 models
> wait 60
> hide #1
> show #1.1 models
> wait 20
> view stalksliceG 60
> wait 60
> hide #1
> view front
> show #!1 models
> hide #!2 models
> show #1.1 models
> view name filament
> view name stalkfocus
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 60
> view stalkfocus 60
> wait 60
> view name middle
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 60
> view middle 60
> wait 60
> view stalkfocus 60
> wait 60
> view front60; wait 60; view filament 60; wait 60; view middle 60; wait 60;
> view stalkfocus 60; wait 60
Expected an objects specifier or a view name or a keyword
> view front 60
> wait 60
> view filament 60
> wait 60
> view middle 60
> wait 60
> view stalkfocus 60
> wait 60
> view front
> wait 60
> view filament 60
> wait 80
> view middle 60
> wait 80
> view stalkfocus 60
> view front
> clip off
> view name front
> view name filament
> view front
> wait 60
> view filament 60
> wait 80
> view middle 60
> wait 80
> view stalkfocus 60
> view front
> wait 60
> view filament 60
> wait 80
> view middle 60
> wait 80
> view stalkfocus 60
> view front
> wait 30
> view filament 60
> wait 80
> view middle 60
> wait 80
> view stalkfocus 60
> view middle
> view front
> wait 30
> view filament 60
> wait 80
> view middle 60
> wait 80
> view stalkfocus 60
> view front
> lighting soft
> view name front
> view filament
> view name filament
> view front
> wait 30
> view filament 60
> wait 80
> view middle 60
> wait 80
> view stalkfocus 60
> view front
> wait 30
> view filament 60
> wait 80
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 60
> wait 80
> view middle 90
> wait 90
> view stalkfocus 60
> view front 20
> wait 20
> view filament 60
> wait 80
> view middle 90
> wait 90
> view stalkfocus 60
> view front 20
> wait 20
> view filament 60
> wait 80
> view middle 90
> wait 90
> view stalkfocus 60
> show #!2 models
> hide #!1 models
> view front
> show #!1 models
> hide #!1 models
> select
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 12 models selected
> cartoon (#!2 & sel)
Drag select of 945 residues, 2 pseudobonds
> select up
25499 atoms, 25679 bonds, 2 pseudobonds, 1568 residues, 2 models selected
> select up
74643 atoms, 75184 bonds, 2 pseudobonds, 4640 residues, 2 models selected
> select down
25499 atoms, 25679 bonds, 2 pseudobonds, 1568 residues, 2 models selected
Drag select of 1457 residues, 4 pseudobonds
> select up
33123 atoms, 33357 bonds, 4 pseudobonds, 2041 residues, 2 models selected
> select up
76482 atoms, 77034 bonds, 4 pseudobonds, 4752 residues, 2 models selected
Alignment identifier is 1
Alignment identifier is 2
Drag select of 31 residues
> select up
1543 atoms, 1553 bonds, 93 residues, 1 model selected
> select /B,g,a,f:363
28 atoms, 24 bonds, 4 residues, 1 model selected
> select /B,g,a,f:363-492
8480 atoms, 8552 bonds, 520 residues, 1 model selected
> select
> /B,g,a,f:4-18,38-46,104-119,162-175,191-193,195-203,217-219,227-230,249-254,258-272,274-280,282-298,301-320,329-349,363-380,389-400,411-450,452-456,458-492,499-520,632-634,639-690,695-699,704-734
25332 atoms, 25380 bonds, 1528 residues, 1 model selected
Drag select of 44 residues
> select up
2422 atoms, 2437 bonds, 145 residues, 1 model selected
> select /A,i,b,d:363
28 atoms, 24 bonds, 4 residues, 1 model selected
> select /A,i,b,d:363-674
14016 atoms, 14132 bonds, 4 pseudobonds, 852 residues, 2 models selected
Drag select of 2655 residues, 9 pseudobonds
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near sel distance 4.04
> color zone #1 near sel distance 4.14
> color zone #1 near sel distance 4.24
> color zone #1 near sel distance 4.34
> color zone #1 near sel distance 4.44
> color zone #1 near sel distance 4.54
> color zone #1 near sel distance 4.64
> color zone #1 near sel distance 4.74
> color zone #1 near sel distance 4.84
> color zone #1 near sel distance 4.94
> color zone #1 near sel distance 5.04
> color zone #1 near sel distance 5.14
> color zone #1 near sel distance 5.24
> color zone #1 near sel distance 5.34
> color zone #1 near sel distance 5.44
> color zone #1 near sel distance 5.54
> color zone #1 near sel distance 5.64
> color zone #1 near sel distance 5.74
> color zone #1 near sel distance 5.84
> color zone #1 near sel distance 5.94
> color zone #1 near sel distance 6.04
> color zone #1 near sel distance 6.14
> color zone #1 near sel distance 6.24
> color zone #1 near sel distance 6.34
> color zone #1 near sel distance 6.44
> color zone #1 near sel distance 6.54
> color zone #1 near sel distance 6.64
> color zone #1 near sel distance 6.74
> color zone #1 near sel distance 6.84
> color zone #1 near sel distance 6.94
> color zone #1 near sel distance 7.04
> color zone #1 near sel distance 7.14
> color zone #1 near sel distance 7.24
> color zone #1 near sel distance 7.34
> color zone #1 near sel distance 7.44
> color zone #1 near sel distance 7.54
> color zone #1 near sel distance 7.64
> color zone #1 near sel distance 7.74
> color zone #1 near sel distance 7.84
> color zone #1 near sel distance 7.94
> color zone #1 near sel distance 8.04
> color zone #1 near sel distance 8.14
> color zone #1 near sel distance 8.24
> color zone #1 near sel distance 8.34
> color zone #1 near sel distance 8.44
> color zone #1 near sel distance 8.54
> color zone #1 near sel distance 8.64
> color zone #1 near sel distance 8.74
> color zone #1 near sel distance 8.84
> color zone #1 near sel distance 8.94
> color zone #1 near sel distance 9.04
> color zone #1 near sel distance 9.14
> color zone #1 near sel distance 9.24
> color zone #1 near sel distance 9.34
> color zone #1 near sel distance 9.44
> color zone #1 near sel distance 9.54
> color zone #1 near sel distance 9.64
> color zone #1 near sel distance 9.74
> color zone #1 near sel distance 9.84
> color zone #1 near sel distance 9.94
> color zone #1 near sel distance 10.04
> color zone #1 near sel distance 11.04
> color zone #1 near sel distance 12.04
> color zone #1 near sel distance 13.04
> color zone #1 near sel distance 14.04
> color zone #1 near sel distance 15.04
> color zone #1 near sel distance 16.04
> color zone #1 near sel distance 17.04
> color zone #1 near sel distance 18.04
> color zone #1 near sel distance 17.04
> color zone #1 near sel distance 16.04
> hide #!1 models
Drag select of 1875 residues, 6 pseudobonds
> select up
37965 atoms, 38232 bonds, 6 pseudobonds, 2330 residues, 2 models selected
> select up
76482 atoms, 77034 bonds, 6 pseudobonds, 4752 residues, 2 models selected
> select up
76892 atoms, 77444 bonds, 6 pseudobonds, 4778 residues, 2 models selected
> select up
81070 atoms, 81642 bonds, 6 pseudobonds, 5044 residues, 2 models selected
> select up
364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected
> select down
81070 atoms, 81642 bonds, 6 pseudobonds, 5044 residues, 2 models selected
> select ~sel
283745 atoms, 285747 bonds, 42 pseudobonds, 17654 residues, 12 models selected
> cartoon hide (#!2 & sel)
> show #!1 models
> hide #!2 models
> select clear
> view front 20
> wait 20
> view filament 60
> wait 80
> view middle 90
> wait 90
> view stalkfocus 60
> view front 20
> wait 20
> view filament 60
> wait 80
> view middle 90
> wait 90
> view stalkfocus 60
> view front 20
> wait 20
> view filament 90
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front 20
> wait
> view filament 90
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 90
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> view name front
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 90
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 20
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> view filament
> view name filament
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 20
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view filament
> view name filament
> view front
> wait
wait requires a frame count argument unless motion is in progress
> view filament 20
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> fly 60 start front
> view filament 20
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> fly 60 start front
> wait
> view filament 20
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> fly 60 start front
> wait
> view filament 20
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> fly front 60 filament
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> view front
> fly front 60 filament
> wait 120
> view middle 90
> wait 90
> view stalkfocus 60
> fly front 60 filament 60 middle 60 stalkfocus
> view front
> fly front 60 filament 60 middle 60 stalkfocus
[Repeated 1 time(s)]
> lighting soft
> fly front 60 filament
> view filament 60
> wait 120
> fly filament 60 middle
> view middle 60
> wait 120
> view stalkfocus
> fly front 60 filament
> view filament 60
> wait 120
> fly filament 60 middle
> view middle 60
> wait 120
> view stalkfocus
> fly front 60 filament
> view filament 60
> wait 120
> fly filament 60 middle
> view middle 60
> wait 120
> view stalkfocus 60
> fly front 60 filament
> view filament 60
> wait 60
> fly filament 60 middle
> view middle 60
> view stalkfocus 60
> fly front 60 filament
> view filament 60
> wait 60
> fly filament 60 middle
> view middle 60
> wait 60
> view stalkfocus 60
> view front
> fly front 60 filament
> view filament 60
> wait 60
> fly filament 60 middle
> view middle 60
> wait 60
> view stalkfocus 60
> view front
> view filament 60
> view front
> fly front filament
> show #!2 models
> hide #2.1 models
> show #2.1 models
> hide #!2 models
> zoom 2
> zoom 1.2
> view name filament
> view front
> fly front filament
> view filament
> show #!2 models
> view name filament
> view front
> fly front filament
[Repeated 1 time(s)]
> view filament
> fly front filament
> view filament 60
> fly front filament
> view filament 60
> fly front filament
> view filament 60
> fly 60 front filament
> view filament 60
> view front 10
> wait 10
> view filament 60
> wait 90
> view middle 90
> wait 90
> view stalkfocus 60
> view front 10
> wait 10
> view filament 60
> wait 90
> view middle 60
> wait 60
> view stalkfocus 60
> view front 10
> wait 10
> view filament 60
> wait 60
> view middle 60
> wait 60
> view stalkfocus 60
> view front 10
> wait 10
> view filament 60
> wait 60
> view middle 60
> wait 90
> view stalkfocus 60
> view front 10
> wait 10
> view filament 60
> wait 60
> view middle 20
> wait 90
> view stalkfocus 60
> view front 10
> wait 10
> view filament 60
> wait 60
> view middle 20
> wait 20
> view stalkfocus 60
> hide #!2 models
> view front 10
> wait 10
> view filament 20
> wait 20
> view middle 20
> wait 20
> view stalkfocus 60
> view front 10
> wait 10
> view filament 20
> wait 20
> view middle
> wait 20
> view stalkfocus 60
> view front 10
> wait 10
> view filament 20
> wait 20
> view middle 40
> wait
> view stalkfocus 60
> view front 10
> wait 10
> view filament 20
> wait 20
> view middle 40
> wait
> view stalkfocus 20
> view front 10
> wait 10
> view filament 20
> wait 20
> view middle 60
> wait
> view stalkfocus 20
> view front 10
> wait 10
> view filament 20
> wait 20
> view middle 60
> wait
> view stalkfocus 60
> view front 10
> wait 10
> view middle 60
> wait
> view stalkfocus 60
> view front 10
> wait 10
> view middle 60
> wait 60
> view stalkfocus 60
> view front 10
> wait 10
> view middle 60
> wait 60
> view stalkfocus 60
> view front 10
> wait 10
> view middle 60
> wait 60
> view stalkfocus 60
> view front 10
> wait 10
> view middle 60
> wait 60
> view stalkfocus 60
> view front 10
> wait 10
> view middle 60
> view list
Named views: filament, focus, front, main, middle, stalkfocus, stalkslice,
stalksliceG, start, tetramer
> view clear
Expected an objects specifier or a view name or a keyword
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 60
> wait 90
> view focus 40
> wait 60
> hide #1
> show #2 models
> wait 60
> view
> view front 10
> wait 10
> view middle 60
> show #!1 models
> show #1.1 models
> hide #!2 models
> hide #2.1 models
> view front
> view middle 60
> view front 10
> wait 10
> turn y 3 120
> wait 120
> view tetramer 60
> wait 90
> view focus 40
> wait 60
> hide #1
> show #2 models
> wait 60
> view
> show #!1 models
> show #1.1 models
> hide #!2 models
> view front
> view tetramer 60
> view front
> view tetramer 60
> view front
> view middle 60
> clip off
> view name middle
> view front
> view middle 60
> view front
> fly 60 front middle
> view front
> view filament
> view middle
> view front
> view name filament
> view front
> view filament 60
> view front
> view filament 60
> view front
> hide #2.1 models
> view front
> view filament 60
> view front
> view tetramer
> view front
> view tetramer 60
> view front
> view name filament
> view front
> view filament 60
> view name filament
> view front
> view filament 60
> view front
> view filament 10
> view front
> view filament 5
> view front
> view filament 2
> view front
> view filament 20
> view name p2
> view front
> view p2 20
> view tetramer
> view front
> view tetramer 20
> view front
> view tetramer 20
> view front
> view p2 20
> view front
> view tetramer 20
> clip off
> volume #!1 hide
> volume show
> hide #!5 models
> hide #!9 models
> hide #!11 models
> hide #!12 models
> camera list
Expected one of '360', '360sbs', '360tb', 'crosseye', 'dome', 'mono', 'ortho',
'sbs', 'stereo', 'tb', or 'walleye' or a keyword
> view list
Named views: filament, focus, front, main, middle, p2, stalkfocus, stalkslice,
stalksliceG, start, tetramer
> ui tool show Log
> view delete main
> view list
Named views: filament, focus, front, middle, p2, stalkfocus, stalkslice,
stalksliceG, start, tetramer
> view tetramer
> view front
> view tetramer 60
> view front
> view tetramer 60
> view front
> view filament 60
> view tetramer
> save "C:/Users/kfzr5/OneDrive - Florida State University/data/test.cxs"
——— End of log from Mon Oct 16 11:12:02 2023 ———
opened ChimeraX session
> view front
> view filament 60
> view front
> view tetramer 60
> ui tool show "Side View"
> view front
> view tetramer 60
> view front
> view filament 60
> view filament
> view name test
> view front
> view test 60
> view tetramer
> view test
> view test clip true
> view test clip false
> view name test
> view front
> view test 60
> view test clip true
> view name test
> view front
> view test 60
> view orient
> view
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting flat
[Repeated 1 time(s)]
> lighting soft
> set bgColor white
> set bgColor gray
> set bgColor #80808000
> set bgColor black
> set bgColor transparent
> set bgColor white
> set bgColor #ffffff00
> view name test
> view front
> view test 60
> view front
> view test 60
[Repeated 1 time(s)]
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view front
> view test 60
> view name p1
> view p1
> view test 60
> view p1
> view test 60
OpenGL version: 3.3.0 NVIDIA 526.98
OpenGL renderer: NVIDIA GeForce RTX 3070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows
Manufacturer: To Be Filled By O.E.M.
Model: To Be Filled By O.E.M.
OS: Microsoft Windows 11 Pro (Build 22621)
Memory: 68,642,189,312
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5800X 8-Core Processor
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.21.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
comtypes: 1.1.14
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pywin32: 305
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
WMI: 1.5.1
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → view command not doing smooth zoom |
comment:2 by , 2 years ago
| Resolution: | → not a bug |
|---|---|
| Status: | assigned → closed |
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Your problem is probably that you have named one of the views using the standard perspective camera, and the other view with the orthographic camera. Those two camera modes have different ways of defining the zoom level. For the perspective camera the zoom has to do with the distance of the camera to the objects and the angular field of view, while for the orthographic camera the distance of the camera does not matter and instead it has a field width (in Angstroms). If you try to smoothly transition between the two different camera modes it simply switches the view at the end.