Opened 2 years ago

Closed 2 years ago

#9955 closed defect (nonchimerax)

Movie creation: No space left on device

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-13.0-arm64-arm-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/cryosparc_P2_J450_006_volume_map_sharp.mrc

Opened cryosparc_P2_J450_006_volume_map_sharp.mrc as #1, grid size
640,640,640, pixel 0.832, shown at level 0.0374, step 4, values float32  

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA-membrane.mrc

Opened typeA-membrane.mrc as #2, grid size 640,640,640, pixel 0.832, shown at
level 0.0236, step 4, values float32  

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc

Opened typeA.mrc as #3, grid size 600,600,600, pixel 1.04, shown at level
0.0239, step 4, values float32  

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_mem.pdb

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb

Summary of feedback from opening
/Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 ASN A 2
ALA A 21 1 20  
Start residue of secondary structure not found: HELIX 2 2 SER A 31 THR A 34 1
4  
Start residue of secondary structure not found: HELIX 3 3 PHE A 56 LEU A 72 1
17  
Start residue of secondary structure not found: HELIX 4 4 LEU A 75 ALA A 78 1
4  
Start residue of secondary structure not found: HELIX 5 5 LEU A 84 THR A 107 1
24  
888 messages similar to the above omitted  
  
Chain information for A_prot.pdb #5  
---  
Chain | Description  
1A | No description available  
1B | No description available  
1C | No description available  
1D | No description available  
1E | No description available  
1F | No description available  
1G | No description available  
1H | No description available  
1I | No description available  
1J | No description available  
1K | No description available  
1L | No description available  
1M | No description available  
1N | No description available  
1O | No description available  
1P | No description available  
1Q | No description available  
1R | No description available  
1S | No description available  
1T | No description available  
1U | No description available  
1V | No description available  
1W | No description available  
1X | No description available  
1Y | No description available  
1Z | No description available  
1a | No description available  
1b | No description available  
1c | No description available  
1d | No description available  
1e | No description available  
1f | No description available  
1g | No description available  
1h | No description available  
1i | No description available  
1j | No description available  
1k | No description available  
1l | No description available  
1m | No description available  
1n | No description available  
1o | No description available  
1p | No description available  
1q | No description available  
1r | No description available  
1s | No description available  
3A | No description available  
3B | No description available  
3C 3P | No description available  
3D | No description available  
3E 3R | No description available  
3F 3S | No description available  
3G 3T | No description available  
3H 3U | No description available  
3I 3V | No description available  
3J 3W | No description available  
3N | No description available  
3O | No description available  
3Q | No description available  
3X | No description available  
3Y | No description available  
4A | No description available  
4B | No description available  
4C | No description available  
4D | No description available  
4E | No description available  
4F | No description available  
4G | No description available  
4H | No description available  
4I | No description available  
4J | No description available  
4K | No description available  
4L | No description available  
4M | No description available  
4N | No description available  
  

> select clear

> hide #!2 models

> hide #!3 models

> hide #4 models

> hide #!5 atoms

> show #!5 cartoons

> select add #5

118101 atoms, 120933 bonds, 146 pseudobonds, 14314 residues, 3 models selected  

Mismatch between Cocoa '\x0' and Carbon 'v' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon 'V' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon 'v' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon 'v' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u221a' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u25ca' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u221a' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u25ca' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x16' for virtual key 9 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> molmap sel 3

Opened A_prot.pdb map 3 as #6, grid size 235,300,230, pixel 1, shown at level
0.115, step 1, values float32  

> hide #!5 models

> select subtract #5

Nothing selected  

> select add #1

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #1,1,0,0,-285.8,0,1,0,167.7,0,0,1,91.914

> view matrix models
> #1,-0.21978,0.8697,-0.44194,-52.4,0.78404,0.42704,0.45047,-32.052,0.5805,-0.2475,-0.77573,574.47

> view matrix models
> #1,-0.3924,0.69282,-0.60499,92.755,0.81636,0.56537,0.11795,29.375,0.42376,-0.44761,-0.78745,672.99

> view matrix models
> #1,-0.29699,0.74005,-0.60342,-21.997,0.84017,0.50282,0.20317,79.283,0.45377,-0.44664,-0.77111,651.57

> view matrix models
> #1,-0.38916,0.54382,-0.74352,99.638,-0.10608,0.77532,0.6226,122.55,0.91504,0.32116,-0.24403,155.78

> view matrix models
> #1,-0.40213,0.12194,-0.90743,268.01,-0.176,0.96231,0.20731,224.68,0.89851,0.24307,-0.36551,219.96

> view matrix models
> #1,-0.40213,0.12194,-0.90743,-1.6019,-0.176,0.96231,0.20731,53.193,0.89851,0.24307,-0.36551,71.389

> view matrix models
> #1,-0.47934,0.50939,-0.71467,-146.21,0.1566,0.85089,0.50146,-99.684,0.86355,0.12845,-0.48764,150.38

> view matrix models
> #1,-0.2428,0.068262,-0.96767,-10.146,-0.14342,0.98403,0.1054,71.521,0.95942,0.16438,-0.22913,32.403

> view matrix models
> #1,-0.2428,0.068262,-0.96767,-6.4109,-0.14342,0.98403,0.1054,22.42,0.95942,0.16438,-0.22913,56.303

> fitmap #1 inMap #6

Fit map cryosparc_P2_J450_006_volume_map_sharp.mrc in map A_prot.pdb map 3
using 40872 points  
correlation = 0.7747, correlation about mean = 0.5184, overlap = 1676  
steps = 336, shift = 13.6, angle = 17.2 degrees  
  
Position of cryosparc_P2_J450_006_volume_map_sharp.mrc (#1) relative to
A_prot.pdb map 3 (#6) coordinates:  
Matrix rotation and translation  
0.00450696 0.00279938 -0.99998592 -53.13910322  
-0.00379807 0.99998891 0.00278227 7.88010026  
0.99998263 0.00378548 0.00451754 13.39301806  
Axis 0.00050161 -0.99999443 -0.00329876  
Axis point -33.28119590 0.00000000 -20.00419765  
Rotation angle (degrees) 89.74178369  
Shift along axis -7.95089176  
  

> hide #!1 models

> show #!1 models

> hide #!1 models

> hide #!6 models

> show #!1 models

> volume #1 level 0.1022

> volume #1 step 1

> show #!6 models

> fitmap #1 inMap #6

Fit map cryosparc_P2_J450_006_volume_map_sharp.mrc in map A_prot.pdb map 3
using 674343 points  
correlation = 0.8663, correlation about mean = 0.2717, overlap = 7.511e+04  
steps = 40, shift = 0.0289, angle = 0.0642 degrees  
  
Position of cryosparc_P2_J450_006_volume_map_sharp.mrc (#1) relative to
A_prot.pdb map 3 (#6) coordinates:  
Matrix rotation and translation  
0.00472422 0.00220154 -0.99998642 -53.07834777  
-0.00471769 0.99998649 0.00217926 8.28271548  
0.99997771 0.00470733 0.00473455 13.10643762  
Axis 0.00126405 -0.99999322 -0.00345966  
Axis point -33.10363340 0.00000000 -20.12076479  
Rotation angle (degrees) 89.72941207  
Shift along axis -8.39509673  
  

> volume #1 level 0.06291

> hide #!1 models

> show #!1 models

> hide #!6 models

> show #!3 models

> select add #3

4 models selected  

> select subtract #1

2 models selected  

> view matrix models #3,1,0,0,-366.53,0,1,0,-60.756,0,0,1,-242.79

> view matrix models #3,1,0,0,-592.45,0,1,0,62.39,0,0,1,-309.22

> view matrix models #3,1,0,0,-704.52,0,1,0,156.85,0,0,1,-338.36

> view matrix models
> #3,-0.43256,0.20446,-0.87811,-31.455,0.088414,0.97887,0.18437,72.379,0.89726,0.0021139,-0.4415,-103.21

> view matrix models
> #3,-0.46075,-0.004597,-0.88752,35.447,0.18246,0.97814,-0.09979,143.46,0.86857,-0.20792,-0.44984,-36.274

> view matrix models
> #3,-0.46075,-0.004597,-0.88752,133.7,0.18246,0.97814,-0.09979,142.94,0.86857,-0.20792,-0.44984,56.349

> volume #3 level 0.107

> volume #3 step 1

> view matrix models
> #3,-0.32699,0.19844,-0.92396,53.42,0.049995,0.97997,0.19278,80.412,0.9437,0.016843,-0.33036,-66.244

> view matrix models
> #3,-0.20475,0.10359,-0.97332,59.425,-0.077119,0.98959,0.12154,139.95,0.97577,0.099947,-0.19463,-144.46

> view matrix models
> #3,-0.16931,-0.049928,-0.9843,93.19,0.086083,0.99415,-0.065235,155.18,0.9818,-0.095776,-0.16402,-105.29

> view matrix models
> #3,-0.16931,-0.049928,-0.9843,10.531,0.086083,0.99415,-0.065235,53.008,0.9818,-0.095776,-0.16402,76.683

> view matrix models
> #3,-0.16931,-0.049928,-0.9843,45.282,0.086083,0.99415,-0.065235,23.008,0.9818,-0.095776,-0.16402,78.581

> fitmap #3 inMap #1

Fit map typeA.mrc in map cryosparc_P2_J450_006_volume_map_sharp.mrc using
813709 points  
correlation = 0.8967, correlation about mean = 0.6544, overlap = 2.271e+04  
steps = 264, shift = 26.8, angle = 11.4 degrees  
  
Position of typeA.mrc (#3) relative to
cryosparc_P2_J450_006_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99998265 -0.00193714 -0.00556251 -12.87610935  
0.00191408 0.99998957 -0.00414832 -7.09276587  
0.00557048 0.00413760 0.99997593 -53.69566857  
Axis 0.57531160 -0.77299021 0.26739988  
Axis point 8854.82384174 0.00000000 -658.28496698  
Rotation angle (degrees) 0.41260474  
Shift along axis -16.28335170  
  

> set bgColor white

> select clear

> hide #!1 models

> volume #3 color darkgrey

> lighting soft

> show #!1 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> view

> show #!1 models

> view

> close #2

> view

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!6 models

> show #!5 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> hide #!5 models

> show #!6 models

> volumn subtract #1 #6

Unknown command: volumn subtract #1 #6  

> volume subtract #1 #6

Opened volume difference as #2, grid size 640,640,640, pixel 0.832, shown at
step 1, values float32  

> volume #2 level 0.015

> volume #2 level 0.03

> show #!3 models

> hide #!3 models

> transparency #2.1 50

> show #4 models

> hide #4 models

> transparency #2.1 0

> ui mousemode right "map eraser"

> volume #2 color #929292

> volume erase #2 center -527.5,213.44,240.69 radius 193.38

> volume erase #2 center -167.31,317.4,269.13 radius 109.32

> volume erase #2 center -201.45,378.92,360.36 radius 80.335

> volume erase #2 center -196.24,298.8,331.78 radius 80.335

> volume erase #2 center -186.88,186.92,243.43 radius 80.335

> volume erase #2 center -190.71,239.22,308 radius 80.335

> volume erase #2 center -202.79,339.9,264.46 radius 80.335

> volume erase #2 center -429.62,298.16,300.14 radius 80.335

> volume erase #2 center -402.27,302.78,218.13 radius 80.335

> volume erase #2 center -398.32,265.95,331.49 radius 80.335

> volume erase #2 center -393.78,215.47,300.74 radius 80.335

> volume erase #2 center -418.47,338.94,359.17 radius 80.335

> volume erase #2 center -443.01,301.32,298.55 radius 113.88

> volume erase #2 center -437.61,191.5,238.11 radius 113.88

> hide #!2 models

> show #!2 models

> transparency #2.1 50

> show #4 models

> select add #4

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> style sel stick

Changed 77740 atom styles  

> size stickRadius 2

Changed 197182 bond radii  

> show #!5 models

> show sel atoms

> select clear

> select add #5

118101 atoms, 120933 bonds, 146 pseudobonds, 14314 residues, 3 models selected  

> show sel atoms

> select clear

> hide #!5 models

> surface dust #2 size 8.32

> hide #4 models

> show #4 models

> ui mousemode right "map eraser"

> hide #4 models

> show #4 models

> hide #4 models

> show #4 models

> hide #!2 models

> show #!2 models

> hide #4 models

> show #!6 models

> volume resample #2 onGrid #6

Opened volume difference resampled as #7, grid size 235,300,230, pixel 1,
shown at step 1, values float32  

> volume #7 level 0.03

> close #7

> show #!2 models

> show #!1 models

> hide #!1 models

> show #!3 models

> hide #!2 models

> volume resample #3 onGrid #6

Opened typeA.mrc resampled as #7, grid size 235,300,230, pixel 1, shown at
step 1, values float32  

> volume #7 level 0.06275

> volume #7 level 0.1291

> volume #7 level 0.1414

> surface dust #7 size 10

> show #!5 models

> transparency #7.1 50

> hide #!5 models

> show #!5 models

> color zone #7 near #5 distance 6

> hide #!5 models

> show #!2 models

> close #3

> hide #!2 models

> save /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc models #7

> show #!2 models

> hide #!2 models

> save /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA-membrane.mrc
> models #2

> show #!2 models

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA-membrane.mrc

Opened typeA-membrane.mrc as #3, grid size 640,640,640, pixel 0.832, shown at
level 0.0264, step 4, values float32  

> color #3 #941100ff models

> close #3

> hide #!2 models

> show #!2 models

> volume resample #2 onGrid #7

Opened typeA-membrane.mrc resampled as #3, grid size 235,300,230, pixel 1,
shown at step 1, values float32  

> close #3

> show #!2 models

> show #4 models

> hide #4 models

> show #4 models

> hide #!2 models

> hide #4 models

> hide #!7 models

> show #4 models

> hide #4 models

> show #!2 models

> close #6

> close #1

> close #7

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc

Opened typeA.mrc as #1, grid size 235,300,230, pixel 1, shown at level 0.319,
step 1, values float32  

> show #4 models

> show #!5 models

> save
> /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA_membrane_and_pdb.cxs
> includeMaps true

> close #4#5

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb

Summary of feedback from opening
/Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 ASN A 2
ALA A 21 1 20  
Start residue of secondary structure not found: HELIX 2 2 SER A 31 THR A 34 1
4  
Start residue of secondary structure not found: HELIX 3 3 PHE A 56 LEU A 72 1
17  
Start residue of secondary structure not found: HELIX 4 4 LEU A 75 ALA A 78 1
4  
Start residue of secondary structure not found: HELIX 5 5 LEU A 84 THR A 107 1
24  
888 messages similar to the above omitted  
  
Chain information for A_prot.pdb #3  
---  
Chain | Description  
1A | No description available  
1B | No description available  
1C | No description available  
1D | No description available  
1E | No description available  
1F | No description available  
1G | No description available  
1H | No description available  
1I | No description available  
1J | No description available  
1K | No description available  
1L | No description available  
1M | No description available  
1N | No description available  
1O | No description available  
1P | No description available  
1Q | No description available  
1R | No description available  
1S | No description available  
1T | No description available  
1U | No description available  
1V | No description available  
1W | No description available  
1X | No description available  
1Y | No description available  
1Z | No description available  
1a | No description available  
1b | No description available  
1c | No description available  
1d | No description available  
1e | No description available  
1f | No description available  
1g | No description available  
1h | No description available  
1i | No description available  
1j | No description available  
1k | No description available  
1l | No description available  
1m | No description available  
1n | No description available  
1o | No description available  
1p | No description available  
1q | No description available  
1r | No description available  
1s | No description available  
3A | No description available  
3B | No description available  
3C 3P | No description available  
3D | No description available  
3E 3R | No description available  
3F 3S | No description available  
3G 3T | No description available  
3H 3U | No description available  
3I 3V | No description available  
3J 3W | No description available  
3N | No description available  
3O | No description available  
3Q | No description available  
3X | No description available  
3Y | No description available  
4A | No description available  
4B | No description available  
4C | No description available  
4D | No description available  
4E | No description available  
4F | No description available  
4G | No description available  
4H | No description available  
4I | No description available  
4J | No description available  
4K | No description available  
4L | No description available  
4M | No description available  
4N | No description available  
  

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_mem.pdb

> save
> /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA_membrane_and_pdb.cxs
> includeMaps true

> hide #!2 models

> hide #!3 models

> hide #4 models

> show #4 models

> hide #!1 models

> select ::name="PC1"

765 atoms, 748 bonds, 17 residues, 1 model selected  

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 197182 bond radii  

> select P

1599 atoms, 1579 residues, 2 models selected  

> style sel & #4 sphere

Changed 1495 atom styles  

> style sel & #4 sphere

Changed 1495 atom styles  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> color sel dark cyan

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> color sel antique white

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 197182 bond radii  

> color sel antique white

> select P

1599 atoms, 1579 residues, 2 models selected  

> style sel & #4 sphere

Changed 1495 atom styles  

> color sel dark cyan

> size ballScale 1

Changed 2 ball scales  

> size ballScale 2

Changed 2 ball scales  

> style sel & #4 sphere

Changed 1495 atom styles  

> size spherescale 2

Expected a keyword  

> size sphereradius 2

Expected a keyword  

> size ballScale 20

Changed 2 ball scales  

> style sel & #4 sphere

Changed 1495 atom styles  

> select clear

> select P

1599 atoms, 1579 residues, 2 models selected  

> size sel ballScale 3

Changed 2 ball scales  

> style sel & #4 ball

Changed 1495 atom styles  

> size sel ballScale 2

Changed 2 ball scales  

> select clear

> transparency stick 30

Missing or invalid "percent" argument: Expected a number  

> transparency 30 stick

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #4 antiquewhite

> select add #4

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> color #4 #faebd7fd

> lighting soft

> lighting simple

> lighting full

> lighting simple

> color sel peach puff

> select P

1599 atoms, 1579 residues, 2 models selected  

> color (#4 & sel) forest green

> color sel chocolate

> style sel & #4 ball

Changed 1495 atom styles  

> size ballScale 1.5

Changed 2 ball scales  

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 197182 bond radii  

> color sel peach puff

> select P

1599 atoms, 1579 residues, 2 models selected  

> color sel chocolate

> style sel ball

Changed 1599 atom styles  

> size ballScale 1.5

Changed 2 ball scales  

> select clear

> show #!1 models

> show #!3 models

> hide #!3 models

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/typeA.mrc

Opened typeA.mrc as #5, grid size 235,300,230, pixel 1, shown at level 0.319,
step 1, values float32  

> hide #!5 models

> hide #4 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!1 models

> show #4 models

> hide #4 models

> show #4 models

> hide #4 models

> hide #!3 atoms

> show #!3 cartoons

> cartoon style #3 modeHelix tube sides 20

> lighting soft

> show #4 models

> hide #4 models

> hide #!3 models

> show #!3 models

> show #!1 models

> color zone #1 near #3 distance 6

> hide #!3 models

> volume #1 level 0.015

> volume #1 level 0.02

> volume #1 level 0.03

> volume #1 level 0.04

> volume #1 level 0.3

> volume #1 level 0.15

> volume #5 color #797979

> volume #5 color darkgrey

> volume #5 level 0.15

> color #5 #c6f7ff99 models

> color #5 darkgrey models

> transparency #5.1 0

> hide #!5 models

> show #!2 models

> color #2 #c6f7ff99 models

> show #4 models

> lighting simple

> show #!1 models

> lighting soft

> color #4 peachpuff

> color #4 #ffdab900

> color #4 peachpuff

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!5 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> hide #4 models

> show #4 models

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 197182 bond radii  

> color sel peach puff

> select P

1599 atoms, 1579 residues, 2 models selected  

> color sel chocolate

> style sel ball

Changed 1599 atom styles  

> size ballScale 1.5

Changed 2 ball scales  

> select clear

> select add #4

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> color sel byhetero

> select clear

[Repeated 1 time(s)]

> color #4 #919191ff

> color #4 silver

> select P

1599 atoms, 1579 residues, 2 models selected  

> color (#4 & sel) orange

> select clear

> show #!2 models

> hide #!2 models

> select add #4

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> color sel forest green

> select P

1599 atoms, 1579 residues, 2 models selected  

> color (#4 & sel) orange

> show #!2 models

> select clear

> volume #2 level 0.02

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> hide #4 models

> show #!1 models

> show #!2 models

> hide #!1 models

> show #!1 models

> show #!5 models

> hide #!2 models

> hide #!1 models

> show #4 models

> open /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb

Summary of feedback from opening
/Users/hello/Desktop/artificial_mem_prot_pdb/typeA/A_prot.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 ASN A 2
ALA A 21 1 20  
Start residue of secondary structure not found: HELIX 2 2 SER A 31 THR A 34 1
4  
Start residue of secondary structure not found: HELIX 3 3 PHE A 56 LEU A 72 1
17  
Start residue of secondary structure not found: HELIX 4 4 LEU A 75 ALA A 78 1
4  
Start residue of secondary structure not found: HELIX 5 5 LEU A 84 THR A 107 1
24  
888 messages similar to the above omitted  
  
Chain information for A_prot.pdb #6  
---  
Chain | Description  
1A | No description available  
1B | No description available  
1C | No description available  
1D | No description available  
1E | No description available  
1F | No description available  
1G | No description available  
1H | No description available  
1I | No description available  
1J | No description available  
1K | No description available  
1L | No description available  
1M | No description available  
1N | No description available  
1O | No description available  
1P | No description available  
1Q | No description available  
1R | No description available  
1S | No description available  
1T | No description available  
1U | No description available  
1V | No description available  
1W | No description available  
1X | No description available  
1Y | No description available  
1Z | No description available  
1a | No description available  
1b | No description available  
1c | No description available  
1d | No description available  
1e | No description available  
1f | No description available  
1g | No description available  
1h | No description available  
1i | No description available  
1j | No description available  
1k | No description available  
1l | No description available  
1m | No description available  
1n | No description available  
1o | No description available  
1p | No description available  
1q | No description available  
1r | No description available  
1s | No description available  
3A | No description available  
3B | No description available  
3C 3P | No description available  
3D | No description available  
3E 3R | No description available  
3F 3S | No description available  
3G 3T | No description available  
3H 3U | No description available  
3I 3V | No description available  
3J 3W | No description available  
3N | No description available  
3O | No description available  
3Q | No description available  
3X | No description available  
3Y | No description available  
4A | No description available  
4B | No description available  
4C | No description available  
4D | No description available  
4E | No description available  
4F | No description available  
4G | No description available  
4H | No description available  
4I | No description available  
4J | No description available  
4K | No description available  
4L | No description available  
4M | No description available  
4N | No description available  
  

> select #6/1*#ED553B

Expected an objects specifier or a keyword  

> select #6/1* #ED553B

Expected a keyword  

> hide #4 models

> color #6/1* #ED553B

> color #6/3* #F6D55C

Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> color #6/4* #20639B

> color zone #5 near #6 distance 6

> hide #!6 models

> show #4 models

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 318115 bond radii  

> color sel peach puff

> select P

1703 atoms, 1663 residues, 3 models selected  

> color sel chocolate

> select clear

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 318115 bond radii  

> color sel cyan

> select P

1703 atoms, 1663 residues, 3 models selected  

> color sel chocolate

> style sel ball

Changed 1703 atom styles  

> size ballScale 1.5

Changed 3 ball scales  

> select clear

> select ::name="POP"

77740 atoms, 76249 bonds, 1495 residues, 1 model selected  

> size stickRadius 1

Changed 318115 bond radii  

> color sel light blue

> select P

1703 atoms, 1663 residues, 3 models selected  

> color sel chocolate

> style sel ball

Changed 1703 atom styles  

> size ballScale 1.5

Changed 3 ball scales  

> select clear

> hide #4 models

> hide #!5 models

> show #!1 models

> show #!2 models

> show #4 models

> show #!5 models

> hide #!1 models

> hide #!2 models

> hide #4 models

> hide #!5 models

> show #!1 models

> show #!2 models

> view name p1

> view p1

> turn y -1 360

> wait

> turn x 1 75

> wait

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #4 models

> view p1

> turn y -1 360

> wait

> turn x 1 75

> wait

> hide #!1 models

> hide #!2 models

> wait

wait requires a frame count argument unless motion is in progress  

> show #!5 models

> show #4 models

> view p1

> turn x -1 75

> wait

> turn y -1 360

> wait

> turn X 1 360

> wait

> show #!1 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> hide #!5 models

> select P

1703 atoms, 1663 residues, 3 models selected  

> color (#4 & sel) cyan

> select clear

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> transparncy #4 50

Unknown command: transparncy #4 50  

> transparncy 10 #4

Unknown command: transparncy 10 #4  

> transpaency 10 #4

Unknown command: transpaency 10 #4  

> transparency 10 #4

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> transparency #4 70

> transparency #4 100

> select P

1703 atoms, 1663 residues, 3 models selected  

> color (#4 & sel) cornflower blue

> select clear

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!5 models

> show #!6 models

> hide #!5 models

> hide #!6 models

> show #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait

> turn x -1 75

> wait

> hide #!1 models

> hide #!2 models

> wait

wait requires a frame count argument unless motion is in progress  

> show #!5 models

> show #!4 models

> view p1

> turn y -1 360

> wait 10

> turn X 1 90

> wait 50

> hide #4 models

> hide #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait

> turn x -1 75

> wait

> hide #!1 models

> hide #!2 models

> wait

wait requires a frame count argument unless motion is in progress  

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 10

> turn x -1 75

> wait 10

> hide #!1 models

> hide #!2 models

> wait

> show #!5 models

> show #!4 models

> view p1

> hide #4 models

> hide #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 50

> hide #!1 models

> hide #!2 models

> wait

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 50

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 50

> hide #!1 models

> hide #!2 models

> wait

> show #!5 models

> show #!4 models

> view p1

> hide #4 models

> hide #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 50

> hide #!1 models

> hide #!2 models

> wait

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> view p1

> hide #!5 models

> hide #4 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> view p1

> turn y -1 360

> wait 10

> turn X 1 270

> wait 200

> turn X 1 90

> wait 10

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> view p1

> wait 50

> turn y -1 360

> wait 10

> turn X 1 270

> wait 200

> turn X 1 90

> wait 10

> hide #4 models

> view p1

> show #4 models

> turn y -1 360

> wait 10

> turn X 1 270

> wait 200

> turn X 1 90

> wait 10

> view p1

> wait 50

> turn y -1 360

> wait 10

> hide #4 models

> hide #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> view p1

> wait 50

> turn y -1 360

> wait

> turn X 1 270

> wait

> turn X 1 90

> wait

> hide #4 models

> graphics silhouettes true

> show #!2 models

> hide #!5 models

> show #!5 models

> graphics silhouettes false

> hide #!2 models

> show #4 models

> graphics silhouettes true

> hide #4 models

> hide #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> view p1

> wait 50

> turn y -1 360

> wait

> turn X 1 270

> wait

> turn X 1 90

> wait

> graphics silhouettes false

> hide #4 models

> hide #!5 models

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 75

> wait 50

> turn x -1 75

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> view p1

> wait 50

> turn y -1 360

> wait

> turn X 1 270

> wait

> turn X 1 90

> wait

> hide #4 models

> hide #!5 models

> graphics silhouettes false

[Repeated 1 time(s)]

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 180

> wait 50

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> view p1

> wait 50

> turn y -1 360

> wait

> turn X 1 270

> wait 300

> turn X 1 90

> wait

> hide #4 models

> hide #!5 models

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1d' for virtual key 124 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> graphics silhouettes false

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 90

> wait 50

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> wait 50

> turn y -1 360

> wait

> turn X 1 270

> wait 300

> turn X 1 90

> wait

> hide #4 models

> show #4 models

> hide #!5 models

> hide #4 models

> graphics silhouettes false

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 90

> wait 50

> wait 200

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> wait 50

> turn x -1 90

> wait

> turn y -1 360

> wait

> turn X 1 270

> wait 300

> turn X 1 90

> wait

> hide #4 models

> hide #!5 models

> graphics silhouettes false

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 90

> wait 50

> wait 100

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> wait 50

> turn x -1 90

> wait

> turn y -1 360

> wait

> turn X 1 270

> wait 300

> turn X 1 90

> wait

> select clear

> hide #4 models

> hide #!5 models

> save
> /Users/hello/Desktop/artificial_mem_prot_pdb/typeA/1010_typeA_membrane_curvature.cxs
> includeMaps true

> record movie

Unknown command: record movie  

> graphics silhouettes false

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 90

> wait 50

> wait 100

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> wait 50

> turn x -1 90

> wait

> turn y -1 360

> wait

> turn X 1 270

> wait 300

> turn X 1 90

> wait

> movie encode quality higher

No frames have been recorded  

> hide #4 models

> hide #!5 models

> movie record

> graphics silhouettes false

> view p1

> show #!1 models

> show #!2 models

> turn y -1 360

> wait

> turn x 1 90

> wait 50

> wait 100

> wait

wait requires a frame count argument unless motion is in progress  

> hide #!1 models

> hide #!2 models

> show #!5 models

> show #!4 models

> graphics silhouettes true

> wait 50

> turn x -1 90

> wait

> turn y -1 360

> wait

Traceback (most recent call last):  
File
"/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/movie/movie.py", line 172, in capture_image  
i.save(save_path, self.img_fmt)  
File
"/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/Image.py", line 2320, in save  
save_handler(self, fp, filename)  
File
"/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/PpmImagePlugin.py", line 324, in _save  
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])  
File
"/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/ImageFile.py", line 524, in _save  
s = encoder.encode_to_file(fh, bufsize)  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "frame drawn":  
OSError: [Errno 28] No space left on device  
  
File
"/Users/hello/Desktop/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/ImageFile.py", line 524, in _save  
s = encoder.encode_to_file(fh, bufsize)  
  
See log for complete Python traceback.  
  

> turn X 1 270

> wait 300

> turn X 1 90

> wait

> movie encode quality higher

/Users/hello/Desktop/ChimeraX-1.5.app/Contents/bin/ffmpeg -r 25 -i
/var/folders/lk/tgpf2q0d3xq2vbcgn6z5tmvm0000gn/T/chimovie_BUad-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 17 /Users/hello/Desktop/movie.mp4  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with Apple clang version 11.0.0 (clang-1100.0.33.16)  
configuration: --prefix=/private/var/tmp/chimerax_build/v1.1/chimerax/build
--enable-gpl --enable-version3 --disable-network --disable-doc --disable-
devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable-
libtheora --enable-libvpx --enable-libx264
--yasmexe=/private/var/tmp/chimerax_build/v1.1/chimerax/build/bin/yasm
--optflags=-O --extra-
cflags=-I/private/var/tmp/chimerax_build/v1.1/chimerax/build/include --extra-
ldflags='-O3 -Wall -Wextra
-L/private/var/tmp/chimerax_build/v1.1/chimerax/build/lib' --extra-libs=-ldl  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'/var/folders/lk/tgpf2q0d3xq2vbcgn6z5tmvm0000gn/T/chimovie_BUad-%05d.ppm':  
Duration: 00:00:32.80, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 2304x1602, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0x7fc1e300c200] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2  
[libx264 @ 0x7fc1e300c200] profile High, level 5.0  
[libx264 @ 0x7fc1e300c200] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft
2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3
deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00
mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11
fast_pskip=1 chroma_qp_offset=-2 threads=18 lookahead_threads=3
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=17.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to '/Users/hello/Desktop/movie.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
2304x1602, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
frame= 18 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 35 fps= 34 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 47 fps= 24 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
av_interleaved_write_frame(): No space left on device  
frame= 64 fps= 26 q=22.0 size= 373kB time=-00:00:00.03 bitrate=N/A speed=N/A
Error writing trailer of /Users/hello/Desktop/movie.mp4: No space left on
deviceframe= 64 fps= 15 q=22.0 Lsize= 373kB time=-00:00:00.03 bitrate=N/A
speed=N/A  
video:455kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: unknown  
[libx264 @ 0x7fc1e300c200] frame I:1 Avg QP: 7.95 size:249829  
[libx264 @ 0x7fc1e300c200] frame P:16 Avg QP:15.74 size:196043  
[libx264 @ 0x7fc1e300c200] frame B:47 Avg QP:18.47 size:132649  
[libx264 @ 0x7fc1e300c200] consecutive B-frames: 1.6% 0.0% 4.7% 93.8%  
[libx264 @ 0x7fc1e300c200] mb I I16..4: 73.3% 3.1% 23.5%  
[libx264 @ 0x7fc1e300c200] mb P I16..4: 0.5% 1.5% 10.7% P16..4: 4.4% 5.1% 5.7%
0.0% 0.0% skip:72.0%  
[libx264 @ 0x7fc1e300c200] mb B I16..4: 0.0% 0.4% 5.2% B16..8: 6.0% 6.4% 5.8%
direct: 2.4% skip:73.7% L0:35.1% L1:34.2% BI:30.7%  
[libx264 @ 0x7fc1e300c200] 8x8 transform intra:7.8% inter:9.0%  
[libx264 @ 0x7fc1e300c200] coded y,uvDC,uvAC intra: 82.5% 81.5% 71.4% inter:
12.0% 10.7% 7.0%  
[libx264 @ 0x7fc1e300c200] i16 v,h,dc,p: 95% 2% 3% 1%  
[libx264 @ 0x7fc1e300c200] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 9% 11% 24% 7% 10% 8%
11% 8% 12%  
[libx264 @ 0x7fc1e300c200] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 11% 13% 14% 9% 11%
10% 12% 8% 12%  
[libx264 @ 0x7fc1e300c200] i8c dc,h,v,p: 65% 14% 14% 7%  
[libx264 @ 0x7fc1e300c200] Weighted P-Frames: Y:25.0% UV:6.2%  
[libx264 @ 0x7fc1e300c200] ref P L0: 57.7% 14.5% 14.5% 10.6% 2.6%  
[libx264 @ 0x7fc1e300c200] ref B L0: 92.5% 5.9% 1.5%  
[libx264 @ 0x7fc1e300c200] ref B L1: 97.6% 2.4%  
[libx264 @ 0x7fc1e300c200] kb/s:30065.75  
Conversion failed!  
  
An error occurred during encoding. See Reply Log for details.  
  
Error during MPEG encoding:  
\-----------------------------  
Exit value: 1  
Error message:  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with Apple clang version 11.0.0 (clang-1100.0.33.16)  
configuration: --prefix=/private/var/tmp/chimerax_build/v1.1/chimerax/build
--enable-gpl --enable-version3 --disable-network --disable-doc --disable-
devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable-
libtheora --enable-libvpx --enable-libx264
--yasmexe=/private/var/tmp/chimerax_build/v1.1/chimerax/build/bin/yasm
--optflags=-O --extra-
cflags=-I/private/var/tmp/chimerax_build/v1.1/chimerax/build/include --extra-
ldflags='-O3 -Wall -Wextra
-L/private/var/tmp/chimerax_build/v1.1/chimerax/build/lib' --extra-libs=-ldl  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'/var/folders/lk/tgpf2q0d3xq2vbcgn6z5tmvm0000gn/T/chimovie_BUad-%05d.ppm':  
Duration: 00:00:32.80, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 2304x1602, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0x7fc1e300c200] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2  
[libx264 @ 0x7fc1e300c200] profile High, level 5.0  
[libx264 @ 0x7fc1e300c200] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft
2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3
deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00
mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11
fast_pskip=1 chroma_qp_offset=-2 threads=18 lookahead_threads=3
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=17.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to '/Users/hello/Desktop/movie.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
2304x1602, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
frame= 18 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 35 fps= 34 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 47 fps= 24 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
av_interleaved_write_frame(): No space left on device  
frame= 64 fps= 26 q=22.0 size= 373kB time=-00:00:00.03 bitrate=N/A speed=N/A
Error writing trailer of /Users/hello/Desktop/movie.mp4: No space left on
deviceframe= 64 fps= 15 q=22.0 Lsize= 373kB time=-00:00:00.03 bitrate=N/A
speed=N/A  
video:455kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: unknown  
[libx264 @ 0x7fc1e300c200] frame I:1 Avg QP: 7.95 size:249829  
[libx264 @ 0x7fc1e300c200] frame P:16 Avg QP:15.74 size:196043  
[libx264 @ 0x7fc1e300c200] frame B:47 Avg QP:18.47 size:132649  
[libx264 @ 0x7fc1e300c200] consecutive B-frames: 1.6% 0.0% 4.7% 93.8%  
[libx264 @ 0x7fc1e300c200] mb I I16..4: 73.3% 3.1% 23.5%  
[libx264 @ 0x7fc1e300c200] mb P I16..4: 0.5% 1.5% 10.7% P16..4: 4.4% 5.1% 5.7%
0.0% 0.0% skip:72.0%  
[libx264 @ 0x7fc1e300c200] mb B I16..4: 0.0% 0.4% 5.2% B16..8: 6.0% 6.4% 5.8%
direct: 2.4% skip:73.7% L0:35.1% L1:34.2% BI:30.7%  
[libx264 @ 0x7fc1e300c200] 8x8 transform intra:7.8% inter:9.0%  
[libx264 @ 0x7fc1e300c200] coded y,uvDC,uvAC intra: 82.5% 81.5% 71.4% inter:
12.0% 10.7% 7.0%  
[libx264 @ 0x7fc1e300c200] i16 v,h,dc,p: 95% 2% 3% 1%  
[libx264 @ 0x7fc1e300c200] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 9% 11% 24% 7% 10% 8%
11% 8% 12%  
[libx264 @ 0x7fc1e300c200] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 11% 13% 14% 9% 11%
10% 12% 8% 12%  
[libx264 @ 0x7fc1e300c200] i8c dc,h,v,p: 65% 14% 14% 7%  
[libx264 @ 0x7fc1e300c200] Weighted P-Frames: Y:25.0% UV:6.2%  
[libx264 @ 0x7fc1e300c200] ref P L0: 57.7% 14.5% 14.5% 10.6% 2.6%  
[libx264 @ 0x7fc1e300c200] ref B L0: 92.5% 5.9% 1.5%  
[libx264 @ 0x7fc1e300c200] ref B L1: 97.6% 2.4%  
[libx264 @ 0x7fc1e300c200] kb/s:30065.75  
Conversion failed!  
  
\-----------------------------  
  




OpenGL version: 4.1 Metal - 83
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,10
      Model Number: MNWD3LL/A
      Chip: Apple M2 Pro
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 8419.41.10
      OS Loader Version: 8419.41.10

Software:

    System Software Overview:

      System Version: macOS 13.0 (22A8380)
      Kernel Version: Darwin 22.1.0
      Time since boot: 9 days, 9 hours, 50 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 19
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Component: Unassigned → Input/Output
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Movie creation: No space left on device

comment:2 by Tom Goddard, 2 years ago

Resolution: → nonchimerax
Status: assigned → closed

No disk space when encoding movie.

Error writing trailer of /Users/hello/Desktop/movie.mp4: No space left on device

Usually this happens when writing the individual image frames and the error message is more obvious. In this report it runs out of disk space in ffmpeg. We could scan the error output for ffmpeg and issue an easier to notice error message, but I think this is the first time I ever saw it run out of space in ffmpeg, so not worth the trouble. The user will quickly enough discover their machine has no disk space.

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