The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000002004bf280 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-10-10 13:44:34.00 -0500","app_version":"1.6.1","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.6 (22G120)","roots_installed":0,"name":"ChimeraX","incident_id":"4FBFE49E-D623-4342-940C-013F8EF7B9A4"}
{
"uptime" : 74000,
"procRole" : "Background",
"version" : 2,
"userID" : 1508353706,
"deployVersion" : 210,
"modelCode" : "Mac14,9",
"coalitionID" : 3793,
"osVersion" : {
"train" : "macOS 13.6",
"build" : "22G120",
"releaseType" : "User"
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"captureTime" : "2023-10-10 13:41:48.5490 -0500",
"incident" : "4FBFE49E-D623-4342-940C-013F8EF7B9A4",
"pid" : 13708,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-10-08 13:20:39.2891 -0500",
"procStartAbsTime" : 732718546063,
"procExitAbsTime" : 1789578540954,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentProc" : "launchd",
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"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "B3613941-5466-00CF-029A-24D8B872285A",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 1371,
"sleepWakeUUID" : "3033B8FD-3264-47B3-8A63-0020922D8897",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140723128549352\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca816c000-7ffcb72c0000 [241.3M] r-x\/r-x SM=COW ...t_id=33cd8c09",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":13708},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140723128549352\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca816c000-7ffcb72c0000 [241.3M] r-x\/r-x SM=COW ...t_id=33cd8c09",
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/d579i177/Downloads/cryosparc_P24_J324_008_volume_map_sharp.mrc
Opened cryosparc_P24_J324_008_volume_map_sharp.mrc as #1, grid size
224,224,224, pixel 1.18, shown at level 0.0471, step 1, values float32
> open /Users/d579i177/Downloads/cryosparc_P24_J322_007_volume_map_sharp.mrc
Opened cryosparc_P24_J322_007_volume_map_sharp.mrc as #2, grid size
224,224,224, pixel 1.18, shown at level 0.0499, step 1, values float32
> hide #!2 models
> volume #1 level 0.04707
> volume #1 level 0.08781
> volume #1 level 0.274
> volume #2 level 0.1635
> hide #!2 models
> hide #!1 models
> show #!2 models
> volume #2 level 0.2284
> volume #2 level 0.2392
> volume #2 level 0.4936
> volume #2 level 0.3312
> volume #2 level 0.2825
> volume #2 level 0.1581
> show #!1 models
> select add #1
2 models selected
Drag select of 1 cryosparc_P24_J324_008_volume_map_sharp.mrc , 2
cryosparc_P24_J322_007_volume_map_sharp.mrc
> ui mousemode right "translate selected models"
> view matrix models
> #1,1,0,0,-2.0944,0,1,0,5.8697,0,0,1,49.406,#2,1,0,0,-2.0944,0,1,0,5.8697,0,0,1,49.406
Drag select of 1 cryosparc_P24_J324_008_volume_map_sharp.mrc , 2
cryosparc_P24_J322_007_volume_map_sharp.mrc
> view matrix models
> #1,1,0,0,-82.57,0,1,0,-63.608,0,0,1,-11.116,#2,1,0,0,-82.57,0,1,0,-63.608,0,0,1,-11.116
> view matrix models
> #1,1,0,0,-83.642,0,1,0,-47.019,0,0,1,5.4132,#2,1,0,0,-83.642,0,1,0,-47.019,0,0,1,5.4132
> select subtract #1
2 models selected
> select add #1
4 models selected
> select subtract #1
2 models selected
> select add #2
2 models selected
> view matrix models #2,1,0,0,-101.94,0,1,0,-96.982,0,0,1,-42.164
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.8789,-0.47569,-0.035241,-18.82,-0.35254,-0.69757,0.62379,96.435,-0.32132,-0.53583,-0.7808,291.21
> view matrix models
> #2,-0.70906,0.00045064,0.70515,35.608,-0.67611,-0.28443,-0.67969,245.71,0.20026,-0.9587,0.20198,156.85
> view matrix models
> #2,-0.92126,0.30591,0.24021,80.704,-0.16155,0.26084,-0.95177,139.66,-0.35381,-0.91563,-0.19088,272.66
> view matrix models
> #2,-0.99654,0.062311,0.054994,145.7,-0.030852,0.33705,-0.94098,111.06,-0.07717,-0.93942,-0.33397,257.11
> view matrix models
> #2,-0.98942,0.044543,0.13804,136.84,-0.12138,0.26671,-0.9561,134.14,-0.079404,-0.96275,-0.25848,251.15
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.98942,0.044543,0.13804,149.3,-0.12138,0.26671,-0.9561,158.61,-0.079404,-0.96275,-0.25848,327.39
> view matrix models
> #2,-0.98942,0.044543,0.13804,156.38,-0.12138,0.26671,-0.9561,184.68,-0.079404,-0.96275,-0.25848,316.27
> volume #2 level 0.2122
> ui tool show "Fit in Map"
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 22758 points
correlation = 0.446, correlation about mean = 0.06374, overlap = 1282
steps = 76, shift = 3.13, angle = 4.59 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99451999 -0.04577498 -0.09399278 285.97617068
0.07976639 0.24894041 -0.96522847 225.80901907
0.06758192 -0.96743647 -0.24392491 277.24378301
Axis -0.01079041 -0.78960893 0.61351553
Axis point 132.21560236 0.00000000 235.63138989
Rotation angle (degrees) 174.12761427
Shift along axis -11.29325402
> volume #2 level 0.2505
> select add #1
4 models selected
> select subtract #1
2 models selected
> select subtract #2
Nothing selected
> color #1 #bf2010ff models
> color #2 #ff07e1ff models
> select add #1
2 models selected
> view matrix models
> #1,0.99688,-0.077165,0.016333,-30.956,0.077378,0.99692,-0.012808,-43.016,-0.015295,0.014032,0.99978,59.688
> volume #2 level 0.2237
> volume #2 level 0.2198
> volume #2 level 0.216
> volume #2 level 0.2122
> volume #2 level 0.2084
> volume #2 level 0.2007
> volume #2 level 0.1969
> volume #2 level 0.193
> view matrix models
> #1,0.99688,-0.077165,0.016333,1105.7,0.077378,0.99692,-0.012808,89.144,-0.015295,0.014032,0.99978,353.22
> view matrix models
> #1,0.99688,-0.077165,0.016333,55.638,0.077378,0.99692,-0.012808,31.362,-0.015295,0.014032,0.99978,-175.8
> view sel
> view matrix models
> #1,0.99688,-0.077165,0.016333,-19.336,0.077378,0.99692,-0.012808,-55.343,-0.015295,0.014032,0.99978,-223.56
> view matrix models
> #1,0.99688,-0.077165,0.016333,-40.655,0.077378,0.99692,-0.012808,-91.137,-0.015295,0.014032,0.99978,-164.94
> select add #2
6 models selected
> select add #1
8 models selected
> view sel
> select subtract #1
4 models selected
> view matrix models
> #2,-0.98942,0.044543,0.13804,206.95,-0.12138,0.26671,-0.9561,108.68,-0.079404,-0.96275,-0.25848,237.83
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.99737,0.050873,0.051698,-47.469,-0.057674,0.12403,0.9906,-121.29,0.043982,-0.99097,0.12664,177.6
> view matrix models
> #2,-0.7816,-0.35741,-0.51124,312.45,0.36803,-0.92595,0.084672,72.364,-0.50364,-0.12197,0.85526,45.911
> view matrix models
> #2,-0.71654,-0.69328,-0.077095,294.49,-0.072338,-0.036076,0.99673,-98.983,-0.69379,0.71977,-0.0243,68.793
> view matrix models
> #2,-0.84027,-0.45049,0.30168,232.18,-0.17101,0.74824,0.64101,-145.36,-0.51449,0.48703,-0.70576,159.76
> view matrix models
> #2,-0.92214,-0.28482,0.26179,226.15,-0.28508,0.95776,0.037838,-83.358,-0.26151,-0.039739,-0.96438,227.49
> view matrix models
> #2,-0.93461,-0.33229,-0.12682,282.04,-0.30661,0.93345,-0.18618,-49.635,0.18025,-0.13512,-0.9743,182.53
> view matrix models
> #2,-0.92277,-0.34909,-0.16317,287.17,-0.34877,0.93668,-0.031577,-63.539,0.16386,0.02777,-0.98609,164.69
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.92277,-0.34909,-0.16317,288.76,-0.34877,0.93668,-0.031577,-78.334,0.16386,0.02777,-0.98609,75.188
> view matrix models
> #2,-0.92277,-0.34909,-0.16317,267.52,-0.34877,0.93668,-0.031577,-29.185,0.16386,0.02777,-0.98609,72.554
> view matrix models
> #2,-0.92277,-0.34909,-0.16317,275.82,-0.34877,0.93668,-0.031577,-30.054,0.16386,0.02777,-0.98609,70.411
> view matrix models
> #2,-0.92277,-0.34909,-0.16317,275.34,-0.34877,0.93668,-0.031577,-24.602,0.16386,0.02777,-0.98609,69.081
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.99319,-0.10149,-0.057299,238.99,-0.096818,0.99215,-0.079134,-59.555,0.064881,-0.073047,-0.99522,96.664
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.99319,-0.10149,-0.057299,235.14,-0.096818,0.99215,-0.079134,-57.674,0.064881,-0.073047,-0.99522,97.58
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 22758 points
correlation = 0.4475, correlation about mean = 0.02427, overlap = 1312
steps = 76, shift = 2.45, angle = 5.47 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99776240 -0.04595803 0.04855986 263.44695841
-0.05386749 0.98279248 -0.17668402 33.39097784
-0.03960422 -0.17890447 -0.98306902 291.10965494
Axis -0.02507679 0.99568671 -0.08932602
Axis point 135.38221464 0.00000000 144.12248683
Rotation angle (degrees) 177.46251442
Shift along axis 0.63688359
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 22758 points
correlation = 0.4475, correlation about mean = 0.02433, overlap = 1312
steps = 44, shift = 0.00508, angle = 0.0152 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99777877 -0.04571963 0.04844840 263.43790648
-0.05361405 0.98280024 -0.17671794 33.36334930
-0.03953562 -0.17892292 -0.98306842 291.10237831
Axis -0.02495314 0.99568866 -0.08933882
Axis point 135.36855744 0.00000000 144.12392289
Rotation angle (degrees) 177.46770493
Shift along axis 0.63916330
> volume #2 level 0.1739
> volume #2 level 0.1701
> volume #2 level 0.1624
> volume #2 level 0.1547
> volume #2 level 0.1509
> volume #1 level 0.1669
> select subtract #2
Nothing selected
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 37972 points
correlation = 0.4338, correlation about mean = 0.06277, overlap = 1599
steps = 60, shift = 0.0517, angle = 0.363 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99768804 -0.04450617 0.05135925 262.83711654
-0.05317569 0.98183144 -0.18215206 34.19605820
-0.04231924 -0.18446199 -0.98192813 291.99327762
Axis -0.02454581 0.99544497 -0.09212393
Axis point 135.29337573 0.00000000 144.47105836
Rotation angle (degrees) 177.30303281
Shift along axis 0.68917715
> volume #1 level 0.5706
> hide #!2 models
> volume #1 level 0.6859
> show #!2 models
> volume #2 level 0.5262
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 3459 points
correlation = 0.4467, correlation about mean = 0.01325, overlap = 390.5
steps = 296, shift = 1.37, angle = 10.2 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99852518 -0.05136672 0.01757620 268.50704149
-0.05151865 0.99863752 -0.00830322 8.03946645
-0.01712574 -0.00919648 -0.99981105 268.93535850
Axis -0.02573205 0.99965929 -0.00437675
Axis point 135.52444672 0.00000000 133.31968782
Rotation angle (degrees) 179.00547382
Shift along axis -0.04957376
> volume #1 level 0.2081
> volume #1 level 0.2658
> volume #2 level 0.2084
> view
> hide #!1 models
> volume #2 level 0.3309
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> select add #1
2 models selected
> view matrix models
> #1,0.99793,-0.049807,0.040675,-48.948,0.046916,0.9965,0.069179,-92.976,-0.043978,-0.067128,0.99677,-150.05
> undo
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.88945,0.30132,0.34364,-121.77,-0.45702,0.59263,0.66326,-58.35,-0.0037961,-0.74699,0.66483,-22.504
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> view matrix models
> #1,0.93807,0.31195,0.15069,-103.1,-0.32024,0.61489,0.72067,-87.238,0.13215,-0.72429,0.67671,-45.088
> show #!2 models
> color #1 #06bd04ff models
> color #1 #06bd048d models
> color #1 #06bd048a models
> view matrix models
> #1,0.92493,0.32963,-0.18937,-57.019,-0.086061,0.66677,0.74027,-127.72,0.37028,-0.6684,0.64508,-79.593
> view matrix models
> #1,0.89129,-0.45048,-0.05172,32.301,0.3849,0.69133,0.61148,-175.43,-0.23971,-0.56491,0.78957,-32.737
> view matrix models
> #1,0.93506,-0.3081,-0.1753,24.555,0.32658,0.55645,0.76401,-170.74,-0.13784,-0.77164,0.62094,4.4863
> view matrix models
> #1,0.93725,-0.2794,-0.20857,25.016,0.33909,0.5912,0.73178,-172.59,-0.081146,-0.75658,0.64884,-8.8288
> view matrix models
> #1,0.92493,-0.27629,-0.2611,33.442,0.37655,0.5716,0.72903,-174.54,-0.052178,-0.77261,0.63273,-8.304
> view matrix models
> #1,0.90209,-0.31626,-0.29362,46.237,0.42759,0.56316,0.70712,-177.14,-0.058276,-0.76344,0.64325,-10.166
> view matrix models
> #1,0.9253,-0.30291,-0.22819,32.414,0.37923,0.74387,0.55031,-173.27,0.0030521,-0.59574,0.80317,-62.527
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 23595 points
correlation = 0.4448, correlation about mean = 0.08829, overlap = 1323
steps = 196, shift = 3.44, angle = 2.25 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.94916278 0.22625319 0.21885957 196.79392927
0.30930069 0.79955117 0.51483106 -82.36177656
-0.05850726 0.55635189 -0.82888448 173.49125845
Axis 0.14195409 0.94827942 0.28392811
Axis point 111.29686632 0.00000000 91.44217389
Rotation angle (degrees) 171.59047916
Shift along axis -0.90723045
> view matrix models
> #1,0.23333,-0.73861,-0.63247,237.67,0.88438,0.43159,-0.17776,-95.621,0.40427,-0.51787,0.75391,-117.09
> view matrix models
> #1,0.74455,-0.56932,-0.34859,108.72,0.66716,0.61641,0.41826,-173.4,-0.023256,-0.54398,0.83878,-68.878
> view matrix models
> #1,0.75778,-0.63395,-0.15453,88.926,0.64484,0.69138,0.32584,-167.74,-0.099727,-0.34656,0.93271,-97.956
> view matrix models
> #1,0.90365,-0.41202,-0.11684,34.984,0.39142,0.90529,-0.16505,-95.359,0.17378,0.10341,0.97934,-200.3
> view matrix models
> #1,0.96544,-0.21294,-0.15027,4.9377,0.19212,0.97108,-0.14175,-81.021,0.17611,0.10798,0.97843,-201.09
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 23595 points
correlation = 0.4615, correlation about mean = 0.04445, overlap = 1376
steps = 152, shift = 2.26, angle = 21.3 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99641842 0.07991659 -0.02763485 257.12845015
0.07788091 0.99462609 0.06821663 -19.57023775
0.03293798 0.06582008 -0.99728773 249.18596588
Axis -0.03951158 -0.99865531 -0.03356202
Axis point 127.05885415 0.00000000 126.87470999
Rotation angle (degrees) 178.26211340
Shift along axis 1.02118443
> view matrix models
> #1,0.99306,-0.11724,0.009506,-33.803,0.11682,0.99247,0.03688,-101.58,-0.013758,-0.035513,0.99927,-158.91
> view matrix models
> #1,0.98564,-0.14985,0.07782,-37.868,0.11942,0.29282,-0.94868,126.5,0.11937,0.94435,0.30651,-211.7
> view matrix models
> #1,0.9882,-0.087465,0.12575,-53.086,0.12439,-0.020857,-0.99201,173.53,0.089389,0.99595,-0.0097311,-171.19
> volume #2 level 0.1356
> volume #1 level 0.1258
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 48869 points
correlation = 0.4265, correlation about mean = 0.1283, overlap = 1735
steps = 104, shift = 5.81, angle = 10.2 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
-0.99512852 0.09113335 -0.03760241 256.39872428
0.04491300 0.07954288 -0.99581914 255.09691425
-0.08776133 -0.99265686 -0.08324846 275.74167758
Axis 0.04631295 0.73460006 -0.67691791
Axis point 123.46197714 0.00000000 252.43086618
Rotation angle (degrees) 178.04352526
Shift along axis 12.61431041
> select add #2
4 models selected
> select subtract #1
2 models selected
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points
correlation = 0.3957, correlation about mean = 0.1145, overlap = 1553
steps = 124, shift = 3.75, angle = 8.72 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99862812 0.00700006 -0.05189289 269.36586208
0.05135747 -0.06233481 -0.99673305 252.75090117
-0.01021192 -0.99803074 0.06188979 268.97184911
Axis -0.02131502 -0.68462361 0.72858505
Axis point 135.85378622 255.56480254 0.00000000
Rotation angle (degrees) 178.25560165
Shift along axis 17.18809444
> color #1 #06bd04ff models
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points
correlation = 0.3958, correlation about mean = 0.1145, overlap = 1553
steps = 48, shift = 0.0236, angle = 0.0252 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99861878 0.00700087 -0.05207215 269.40644059
0.05153221 -0.06273724 -0.99669878 252.76486271
-0.01024462 -0.99800552 0.06228981 268.92270199
Axis -0.02138380 -0.68447594 0.72872177
Axis point 135.87532109 255.50817287 0.00000000
Rotation angle (degrees) 178.24908809
Shift along axis 17.19742911
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points
correlation = 0.3957, correlation about mean = 0.1146, overlap = 1553
steps = 56, shift = 0.0253, angle = 0.0229 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863242 0.00708716 -0.05179829 269.34256257
0.05125638 -0.06245839 -0.99673052 252.78143599
-0.01029923 -0.99802240 0.06200971 268.97028480
Axis -0.02131126 -0.68457925 0.72862685
Axis point 135.85291484 255.55137188 0.00000000
Rotation angle (degrees) 178.26310424
Shift along axis 17.19001747
> transparency sel 50
> select add #1
4 models selected
> select subtract #2
2 models selected
> transparency sel 50
> transparency sel 0
> volume sel style surface
> volume sel style mesh
> volume sel style surface
> volume sel style image
> volume sel style mesh
> volume sel style surface
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points
correlation = 0.3958, correlation about mean = 0.1146, overlap = 1553
steps = 44, shift = 0.0247, angle = 0.00825 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863112 0.00715198 -0.05181434 269.35574988
0.05126706 -0.06258585 -0.99672197 252.78264004
-0.01037138 -0.99801396 0.06213351 268.95784583
Axis -0.02134026 -0.68453292 0.72866953
Axis point 135.86810498 255.52655457 0.00000000
Rotation angle (degrees) 178.26533544
Shift along axis 17.19522523
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points
correlation = 0.3958, correlation about mean = 0.1145, overlap = 1553
steps = 60, shift = 0.00293, angle = 0.0118 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863369 0.00717416 -0.05176164 269.34479192
0.05121514 -0.06238803 -0.99673704 252.76686986
-0.01038006 -0.99802618 0.06193537 268.98333059
Axis -0.02132713 -0.68460546 0.72860176
Axis point 135.86522397 255.55147574 0.00000000
Rotation angle (degrees) 178.26808931
Shift along axis 17.19179907
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 44612 points
correlation = 0.3957, correlation about mean = 0.1146, overlap = 1553
steps = 60, shift = 0.0198, angle = 0.00744 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99863080 0.00709083 -0.05182898 269.34740177
0.05128674 -0.06246187 -0.99672874 252.77574267
-0.01030497 -0.99802216 0.06201268 268.96965265
Axis -0.02132374 -0.68457787 0.72862778
Axis point 135.85602270 255.54955357 0.00000000
Rotation angle (degrees) 178.26205667
Shift along axis 17.19058895
> hide #!2 models
> volume #1 change image level -0.009818,0 level 0.04691,0.8 level 1.896,1
> volume #1 level 0.4305
> show #!2 models
> volume #2 level 0.4535
> hide #!1 models
> volume #2 level 0.3769
> show #!1 models
> hide #!2 models
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 9433 points
correlation = 0.4524, correlation about mean = 0.09667, overlap = 802.4
steps = 92, shift = 1.34, angle = 8.38 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99913855 -0.00102370 -0.04148612 269.23440571
0.04080270 -0.20656303 -0.97758214 270.19435222
-0.00756875 -0.97843276 0.20642686 249.82134998
Axis -0.01579398 -0.62976907 0.77662183
Axis point 134.70785019 238.72522819 0.00000000
Rotation angle (degrees) 178.45692867
Shift along axis 19.60438563
> show #!2 models
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 9433 points
correlation = 0.452, correlation about mean = 0.09628, overlap = 802.1
steps = 44, shift = 0.0198, angle = 0.0183 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
-0.99914536 -0.00074722 -0.04132780 269.16560764
0.04059090 -0.20654201 -0.97759540 270.23268872
-0.00780545 -0.97843744 0.20639582 249.86464373
Axis -0.01581933 -0.62977943 0.77661291
Axis point 134.70622682 238.73695692 -0.00000000
Rotation angle (degrees) 178.47492913
Shift along axis 19.60309970
> view matrix models
> #1,0.97806,-0.014685,0.2078,-72.476,0.078459,0.95003,-0.30214,-43.455,-0.19298,0.31182,0.93034,-171.07
> view matrix models
> #1,0.97806,-0.014685,0.2078,-79.635,0.078459,0.95003,-0.30214,-43.804,-0.19298,0.31182,0.93034,-169.82
> view matrix models
> #1,0.98275,-0.035449,0.18151,-72.152,0.10396,0.91762,-0.38363,-54.135,-0.15296,0.39588,0.90547,-166.79
> view matrix models
> #1,0.88938,-0.1204,-0.44102,39.324,0.11983,0.99236,-0.029267,-116.16,0.44118,-0.026818,0.89702,-188.18
> view matrix models
> #1,0.88938,-0.1204,-0.44102,46.128,0.11983,0.99236,-0.029267,-99.009,0.44118,-0.026818,0.89702,-201.31
> view matrix models
> #1,0.88938,-0.1204,-0.44102,40.543,0.11983,0.99236,-0.029267,-122.81,0.44118,-0.026818,0.89702,-183.63
> view matrix models
> #1,0.95898,-0.28334,-0.0083493,-8.1961,0.081378,0.24697,0.9656,-159.62,-0.27153,-0.92667,0.2599,119.52
> view matrix models
> #1,0.95898,-0.28334,-0.0083493,-10.786,0.081378,0.24697,0.9656,-167.84,-0.27153,-0.92667,0.2599,139.58
> view matrix models
> #1,-0.098897,-0.61528,0.78208,61.264,-0.21827,0.78021,0.5862,-145.21,-0.97086,-0.11273,-0.21146,190.87
> view matrix models
> #1,-0.96282,0.066036,0.26193,158.73,0.1578,0.92451,0.34696,-180.2,-0.21925,0.37539,-0.90056,124.32
> view matrix models
> #1,-0.89944,0.32091,0.29668,111.74,0.15049,0.86474,-0.47914,-54.676,-0.41032,-0.38631,-0.82608,239.79
> view matrix models
> #1,-0.90724,0.26673,-0.32522,207.75,-0.30776,-0.94801,0.081018,166.53,-0.2867,0.17359,0.94216,-100.28
> view matrix models
> #1,-0.87022,-0.054131,-0.48968,268.52,0.031365,-0.99802,0.054585,132.08,-0.49166,0.032142,0.87019,-44.332
> view matrix models
> #1,-0.65587,-0.26851,-0.70551,299.04,0.55412,-0.80592,-0.20841,74.744,-0.51263,-0.52763,0.67737,59.705
> view matrix models
> #1,-0.94955,-0.29226,-0.11373,257.41,0.30464,-0.77351,-0.55576,152.46,0.074456,-0.56237,0.82353,-33.898
> view matrix models
> #1,-0.9947,-0.085623,-0.056932,228.03,0.10251,-0.86916,-0.48379,181.66,-0.0080596,-0.48706,0.87333,-39.992
> view matrix models
> #1,-0.99339,-0.097902,-0.059936,229.9,0.1147,-0.86733,-0.48435,179.88,-0.0045658,-0.48802,0.87282,-40.254
> view matrix models
> #1,-0.99339,-0.097902,-0.059936,237.97,0.1147,-0.86733,-0.48435,191.77,-0.0045658,-0.48802,0.87282,-80.33
> view matrix models
> #1,-0.99339,-0.097902,-0.059936,236.28,0.1147,-0.86733,-0.48435,193.21,-0.0045658,-0.48802,0.87282,-84.772
> view matrix models
> #1,-0.99339,-0.097902,-0.059936,243.57,0.1147,-0.86733,-0.48435,221.41,-0.0045658,-0.48802,0.87282,-82.544
> view matrix models
> #1,-0.99601,-0.023085,-0.086204,237.73,0.080004,-0.65896,-0.74791,235.65,-0.03954,-0.75182,0.65818,-12.722
> view matrix models
> #1,-0.99601,-0.023085,-0.086204,235.86,0.080004,-0.65896,-0.74791,229.3,-0.03954,-0.75182,0.65818,-12.41
> view matrix models
> #1,-0.99601,-0.023085,-0.086204,233.49,0.080004,-0.65896,-0.74791,231.49,-0.03954,-0.75182,0.65818,-12.421
> view matrix models
> #1,-0.99601,-0.023085,-0.086204,232.06,0.080004,-0.65896,-0.74791,230.49,-0.03954,-0.75182,0.65818,-12.615
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 9433 points
correlation = 0.4387, correlation about mean = 0.04356, overlap = 772.9
steps = 96, shift = 2.76, angle = 8.8 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.98556646 0.16446443 -0.04012731 -15.57685842
0.11384342 -0.46845260 0.87612318 77.16569696
0.12529335 -0.86804585 -0.48041437 299.75490571
Axis -0.99511732 -0.09437902 -0.02888128
Axis point 0.00000000 128.40193425 127.18293889
Rotation angle (degrees) 118.79323846
Shift along axis -0.43932732
> volume #2 level 0.2352
> volume #1 level 0.2658
> fitmap #2 inMap #1
Fit map cryosparc_P24_J322_007_volume_map_sharp.mrc in map
cryosparc_P24_J324_008_volume_map_sharp.mrc using 22250 points
correlation = 0.4204, correlation about mean = 0.06267, overlap = 1206
steps = 48, shift = 0.163, angle = 2.45 degrees
Position of cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) coordinates:
Matrix rotation and translation
0.98696227 0.15853385 -0.02779384 -16.39318310
0.09510283 -0.43509822 0.89534629 72.79472932
0.12984964 -0.88631628 -0.44450255 297.16039920
Axis -0.99548259 -0.08808140 -0.03544132
Axis point 0.00000000 129.46317793 126.26695873
Rotation angle (degrees) 116.50777510
Shift along axis -0.62449058
> fitmap #1 inMap #2
Fit map cryosparc_P24_J324_008_volume_map_sharp.mrc in map
cryosparc_P24_J322_007_volume_map_sharp.mrc using 23595 points
correlation = 0.4513, correlation about mean = 0.0574, overlap = 1369
steps = 48, shift = 0.326, angle = 2.51 degrees
Position of cryosparc_P24_J324_008_volume_map_sharp.mrc (#1) relative to
cryosparc_P24_J322_007_volume_map_sharp.mrc (#2) coordinates:
Matrix rotation and translation
0.98691297 0.11356065 0.11448484 -29.90366012
0.15478786 -0.46812075 -0.87000212 300.31757047
-0.04520527 0.87633724 -0.47957225 76.26751792
Axis 0.99557006 0.09103769 0.02350321
Axis point 0.00000000 128.82873756 127.86124094
Rotation angle (degrees) 118.71087730
Shift along axis -0.63843956
> view matrix models
> #1,-0.99986,-0.010188,0.013274,217.43,0.0031288,-0.89311,-0.44982,230.84,0.016438,-0.44972,0.89302,-92.603
> view matrix models
> #1,-0.99915,0.024753,0.033004,209.97,-0.037391,-0.88136,-0.47096,237.52,0.01743,-0.47179,0.88154,-88.22
Unsupported scale factor (0.000000) detected on Display0
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac
Model Identifier: Mac14,9
Model Number: MPHE3LL/A
Chip: Unknown
Total Number of Cores: 10 (6 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 10151.1.1
OS Loader Version: 8422.141.2
Software:
System Software Overview:
System Version: macOS 13.6 (22G120)
Kernel Version: Darwin 22.6.0
Time since boot: 5 hours, 21 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
HP E243:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
HP E223:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
