Timeline



Sep 15, 2025:

11:59 PM Ticket #18792 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:34 PM Ticket #18791 (Crash adding/removing screen) created by chimerax-bug-report@…
[…]
5:53 PM Ticket #18117 (Model panel grouping controls) closed by pett
fixed: The next daily build will have an interface for grouping models, …
4:02 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:01 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:00 PM Dev2025-9-15 edited by Tom Goddard
(diff)
11:42 AM Ticket #18790 (pae is not a file in the archive) closed by Tom Goddard
duplicate: User tried to open a Boltz .npz pLDDT file but ChimeraX only handles …
11:32 AM Ticket #18785 (Save MRC file: could not broadcast input array) closed by Tom Goddard
limitation: One day I may change volume flip so it makes a new full copy of the …
11:31 AM Ticket #18789 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229 Still waiting for someone to report this on 1.11 …
11:27 AM Ticket #18788 (Crash during deep recursion) closed by pett
can't reproduce: Don't really have a strong feeling as to what's going on here.
11:22 AM Ticket #18787 (Command script: maximum recursion depth exceeded) closed by pett
can't reproduce: I'm guessing the script calls itself.
11:10 AM Ticket #18780 (Various memory errors) closed by Tom Goddard
limitation: The memory errors are almost always on Windows. This machine has 16 …
11:08 AM Ticket #18786 (ffmpeg: Permission Denied) closed by pett
duplicate: Hi Serhat, Thanks for reporting this problem. It is fixed in the …
11:05 AM Ticket #18784 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
11:04 AM Ticket #18783 (ffmpeg: Permission Denied) closed by pett
duplicate
11:04 AM Ticket #18782 (Crash calling Python object finalizer) closed by pett
can't reproduce: After/during a failure to open an alignment file due to mismatched …
10:20 AM Ticket #18779 (Crash in garbage collection) closed by pett
duplicate
10:18 AM Ticket #18778 (Unknown problem) closed by pett
can't reproduce
10:17 AM Ticket #18777 (ffmpeg: Permission Denied) closed by pett
duplicate
10:14 AM Ticket #18776 (ffmpeg: Permission Denied) closed by pett
duplicate: Hi Kye, Thanks for reporting this problem. Yes, as you discovered it …
10:02 AM Ticket #18790 (pae is not a file in the archive) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #18789 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
[…]
7:54 AM Ticket #18788 (Crash during deep recursion) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #18787 (Command script: maximum recursion depth exceeded) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #18786 (ffmpeg: Permission Denied) created by serhat.doenmez@…
[…]
3:29 AM Ticket #18785 (Save MRC file: could not broadcast input array) created by chimerax-bug-report@…
[…]
2:43 AM Ticket #18784 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
2:32 AM Ticket #18783 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]

Sep 14, 2025:

9:49 AM Ticket #18782 (Crash calling Python object finalizer) created by chimerax-bug-report@…
[…]
1:11 AM Ticket #18781 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]

Sep 13, 2025:

7:22 PM Ticket #18780 (Various memory errors) created by chimerax-bug-report@…
[…]
2:59 AM Ticket #18779 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:17 AM Ticket #18778 (Unknown problem) created by chimerax-bug-report@…
[…]
12:14 AM Ticket #18777 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]

Sep 12, 2025:

1:21 PM Ticket #18776 (ffmpeg: Permission Denied) created by kstachowski@…
[…]
12:33 PM Ticket #18775 (color byattribute range option gives wrong range when palette is alphafold) closed by Tom Goddard
fixed: Fixed. The command "color bfactor palette alphafold range 40,100" now …
11:45 AM Ticket #18775 (color byattribute range option gives wrong range when palette is alphafold) created by goddard@…
[…]
10:13 AM Ticket #18773 (Boltz progress reporting for dead window) closed by Tom Goddard
duplicate: Was fixed several weeks ago in daily build. Boltz GUI closed (in this …
9:55 AM Ticket #18774 (Can't save session because NewerVersionQuery not listed) closed by pett
duplicate
9:47 AM Ticket #18772 (ArtiaX session save: Unknown class name 'MarkerSetPlus') closed by pett
duplicate: Fixed as of ArtiaX 0.4.1 (this ticket has 0.1)
9:43 AM Ticket #18771 (Crash on Mac waking from sleep) closed by pett
duplicate
9:41 AM Ticket #18770 (ffmpeg: Permission denied) closed by pett
duplicate
5:28 AM Ticket #18774 (Can't save session because NewerVersionQuery not listed) created by chimerax-bug-report@…
[…]
3:39 AM Ticket #18773 (Boltz progress reporting for dead window) created by chimerax-bug-report@…
[…]
2:00 AM Ticket #18772 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by chimerax-bug-report@…
[…]
12:41 AM Ticket #18771 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Sep 11, 2025:

11:33 PM Ticket #18770 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
3:38 PM Ticket #18769 (Adjust AlphaFold pLDDT coloring to better match EBI color scale.) created by Tom Goddard
From the ChimeraX mailing list: …
3:20 PM Ticket #18768 (Crash creating QWebEngineProfile) closed by Tom Goddard
can't reproduce: The constructor call QWebEngineProfile(parent) with parent = QWidget …
2:26 PM Ticket #18766 (Crash moving windows between screens) closed by Tom Goddard
duplicate: What we know about this ChimeraX crash was shown in the bug report …
2:24 PM Ticket #18767 (Crash gathering atomic structure session information) closed by pett
can't reproduce
2:19 PM Ticket #18768 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
2:19 PM Ticket #18765 (XMAS: color key deleted multiple times) closed by pett
duplicate: Duplicate of #18761
2:13 PM Ticket #18764 (Crash in event loop) closed by pett
can't reproduce
1:55 PM Ticket #18767 (Crash gathering atomic structure session information) created by chimerax-bug-report@…
[…]
1:31 PM 2025-9-11 edited by Tom Goddard
(diff)
1:20 PM Dev2025-9-15 edited by Tom Goddard
(diff)
1:15 PM Ticket #18766 (Crash moving windows between screens) created by i.lidbury@…
[…]
12:57 PM Ticket #18765 (XMAS: color key deleted multiple times) created by chimerax-bug-report@…
[…]

Sep 10, 2025:

5:16 PM Ticket #18764 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:54 PM Ticket #18762 (Crash on Mac waking from sleep) closed by pett
duplicate
12:48 PM Ticket #18759 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
12:35 PM Ticket #18751 (Crash moving window between screens) closed by Tom Goddard
duplicate: The ChimeraX bug report panel explained what we know about this crash: …
12:01 PM Ticket #18758 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
12:00 PM Ticket #18757 (XTC file with Unicode path) closed by pett
duplicate: Duplicate of #16493; xdrfile 1.1.4 is still the latest release.
11:56 AM Ticket #18756 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Hi Hannah, Thanks for trying out the tech preview. As you …
11:46 AM Ticket #18755 (Crash at exit) closed by pett
can't reproduce: Predate the fix to not call QApplication.quit() on exit, though I do …
11:40 AM Ticket #18754 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Duplicate of #18630
11:30 AM Ticket #18750 (Coulombic failure) closed by pett
not a bug: Hi Marcin, Thanks for reporting this problem. You can ignore the …
11:17 AM Ticket #18749 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
10:33 AM Ticket #18747 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) closed by pett
duplicate: Duplicate of #18646
10:30 AM Ticket #18763 (Crash creating pseudobond group Python instance) created by ccaffalett@…
[…]
10:27 AM Ticket #18746 (Graphics hardware encountered an error and was reset) closed by pett
duplicate
10:08 AM Ticket #18762 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
7:34 AM Ticket #18761 (XMAS: color key deleted multiple times) created by chimerax-bug-report@…
[…]
7:26 AM Ticket #18760 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
7:25 AM Ticket #18759 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
6:40 AM Ticket #18758 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
5:39 AM Ticket #18757 (XTC file with Unicode path) created by chimerax-bug-report@…
[…]
1:21 AM Ticket #18756 (Crash closing tool with in-window status bar with PySide 6.9.2) created by wambuiche08@…
[…]
1:13 AM Ticket #18755 (Crash at exit) created by chimerax-bug-report@…
[…]
12:59 AM Ticket #18754 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]

Sep 9, 2025:

7:47 PM Ticket #18753 (Closing segmentation cursors: self._positions is None) created by chimerax-bug-report@…
[…]
7:35 PM Ticket #18752 (ISOLDE simulation running: crash in ...) created by chimerax-bug-report@…
[…]
6:29 PM Ticket #18751 (Crash moving window between screens) created by sphulera@…
[…]
1:17 PM Ticket #18750 (Coulombic failure) created by marcinwojciech.balcerzyk@…
[…] 4PYP_prepared_glucose0.pdb
12:49 PM Ticket #18749 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
11:40 AM Dev2025-9-15 created by Tom Goddard
11:39 AM 2025-9-11 created by Tom Goddard
11:38 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:32 AM Ticket #18748 (Molecular Dynamics Viewer not handling hexadecimal residue numbers) created by chimerax-bug-report@…
[…]
10:45 AM Ticket #18747 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) created by chimerax-bug-report@…
[…]
10:00 AM Ticket #18746 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…
[…]
9:37 AM Ticket #18745 (Crash opening mmCIF) closed by pett
can't reproduce
9:31 AM Ticket #18744 (Crash on Mac waking from sleep) closed by pett
duplicate
9:27 AM Ticket #18742 (Crash on exit) closed by pett
duplicate: From before the don't-call-QApplication.quit() fix went in.
9:24 AM Ticket #18741 (Session restore: invalid load key, '\x04') closed by pett
limitation: Hi John, Whereas you can open old sessions in new versions of …
2:55 AM Ticket #18745 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
12:39 AM Ticket #18744 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:15 AM Ticket #18743 (Crash in event loop) created by 2023020518@…
[…]

Sep 8, 2025:

9:13 PM Ticket #18742 (Crash on exit) created by chimerax-bug-report@…
[…]
4:48 PM Ticket #18741 (Session restore: invalid load key, '\x04') created by jofrank@…
[…] ITGAL_xray_verson.cxs
4:02 PM Dev2025-9-8 edited by Tom Goddard
(diff)
3:08 PM Dev2025-9-8 edited by Tom Goddard
(diff)
2:23 PM phenix-9-11-25 edited by pett
(diff)
2:19 PM phenix-9-11-25 edited by pett
(diff)
2:18 PM phenix-9-11-25 edited by pett
(diff)
1:51 PM phenix-9-11-25 edited by pett
(diff)
1:50 PM phenix-9-11-25 edited by pett
(diff)
1:38 PM phenix-9-11-25 created by pett
1:38 PM Features edited by pett
(diff)
1:23 PM Ticket #18740 (No space left on device) closed by pett
nonchimerax: Hi Samitha, This error ("No space left on device") means that you ran …
1:00 PM Ticket #18737 (Crash on Mac waking from sleep) closed by pett
duplicate
12:57 PM Ticket #18736 (ffmpeg: Permission Denied) closed by pett
duplicate
12:55 PM Ticket #18735 (Crash on Mac waking from sleep) closed by pett
duplicate
12:53 PM Ticket #18734 (Graphics hardware encountered an error and was reset:) closed by pett
duplicate
12:35 PM Ticket #18726 (Qt fatal error: GLOzone not found for unknown) closed by Greg Couch
duplicate: Apparent duplicate of #18675
12:31 PM Ticket #18733 (DICOM output problems and Wavefront output error) closed by Tom Goddard
fixed: None of the 3d scene export formats (.obj, .glb, .x3d) handle 3D …
12:06 PM Ticket #18729 (Error in glViewport while drawing status bar) closed by Tom Goddard
can't reproduce: Seen this many times mostly on Windows, expose event triggers status …
11:54 AM Ticket #18732 (Crash in event loop) closed by pett
can't reproduce
11:52 AM Ticket #18731 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') closed by pett
duplicate: Hi Peter, Thanks for reporting this problem. It was fixed about 4 …
11:15 AM Ticket #18730 (Viewing SWISSDOCK output) closed by pett
not a bug: Hi Yaozong, You don't open SwissDock output with DICOM format (which …
10:41 AM Ticket #18728 (QWaitCondition: Destroyed while threads are still waiting) closed by pett
can't reproduce: Happened while setting HTML log text. Seems like the communication to …
10:38 AM Ticket #18727 (Qt fatal error: GLOzone not found for unknown) closed by pett
duplicate
10:29 AM Ticket #18725 (Crash in garbage collection) closed by pett
duplicate
10:27 AM Ticket #18724 (Segmentation cursor is None) closed by pett
duplicate: Duplicate of #17004
9:54 AM Ticket #18740 (No space left on device) created by samithar@…
[…]
8:31 AM Ticket #18739 (Open QChem output file: unsupported operand type(s) for +=: 'NoneType' ...) created by chimerax-bug-report@…
[…] idea_rct+THF_opt2.out
7:49 AM Ticket #18738 (isolde sim start: OpenMMException: Error compiling kernel) created by chimerax-bug-report@…
[…]
1:38 AM Ticket #18737 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Sep 7, 2025:

11:49 PM Ticket #18736 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]
10:28 PM Ticket #18735 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:41 PM Ticket #18734 (Graphics hardware encountered an error and was reset:) created by chimerax-bug-report@…
[…]
9:12 AM Ticket #18733 (DICOM output problems and Wavefront output error) created by weberm@…
[…]
7:44 AM Ticket #18732 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:00 AM Ticket #18731 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') created by pmcarlton@…
[…]
2:50 AM Ticket #18730 (Viewing SWISSDOCK output) created by yaozong.chen0915@…
[…] result.dock4
2:50 AM Ticket #18729 (Error in glViewport while drawing status bar) created by chimerax-bug-report@…
[…]
2:12 AM Ticket #18728 (QWaitCondition: Destroyed while threads are still waiting) created by chimerax-bug-report@…
[…]

Sep 6, 2025:

10:20 PM Ticket #18727 (Qt fatal error: GLOzone not found for unknown) created by chimerax-bug-report@…
[…]
9:19 PM Ticket #18726 (Qt fatal error: GLOzone not found for unknown) created by chimerax-bug-report@…
[…]
11:01 AM Ticket #18725 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Sep 5, 2025:

3:54 PM Ticket #18724 (Segmentation cursor is None) created by chimerax-bug-report@…
[…]
12:53 PM Ticket #18723 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: This error is probably a bug in either the Qt window toolkit or …
12:36 PM Ticket #18721 (Cannot open NASA .glb files: KeyError: 'bufferView') closed by Tom Goddard
wontfix: The ChimeraX GLTF reader does not handle every aspect of the GLTF …
11:32 AM Ticket #18722 (Session restore: KeyError: "combine") closed by pett
duplicate: Duplicate of ; they all seem to involve volumes not being restored
11:27 AM Ticket #18720 (Crash opening file) closed by pett
can't reproduce: Probable drag-and-drop
11:09 AM Ticket #18723 (glClear: invalid framebuffer operation) created by Imarquez8943@…
[…]
10:23 AM Ticket #18718 (Crash okaying dialog) closed by pett
can't reproduce: Possibly okaying open dialog for session.
10:07 AM Ticket #18716 (Crash using open/save dialog) closed by pett
can't reproduce
9:59 AM Ticket #18715 (Crash in event loop) closed by pett
limitation: Remote display
9:57 AM Ticket #18714 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
9:53 AM Ticket #18713 (PySide crash while showing Modeller Comparative tool) closed by pett
duplicate: Duplicate of #18707
9:46 AM Ticket #18711 (Crash closing tool with in-window status bar with PySide) closed by pett
duplicate: Duplicate of #18630
8:40 AM Ticket #18722 (Session restore: KeyError: "combine") created by chimerax-bug-report@…
[…]
8:08 AM Ticket #18721 (Cannot open NASA .glb files: KeyError: 'bufferView') created by weberm@…
[…] Mars 2020 Perseverance Rover.glb
7:18 AM Ticket #18720 (Crash opening file) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #18719 (Bad Swissdock file) created by vaishnvi.chikhale@…
[…]
4:10 AM Ticket #18718 (Crash okaying dialog) created by chimerax-bug-report@…
[…]
3:49 AM Ticket #18717 (Crash rendering Qt widget) created by g.s.stewart@…
[…]
1:36 AM Ticket #18716 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
12:31 AM Ticket #18715 (Crash in event loop) created by chimerax-bug-report@…
[…]

Sep 4, 2025:

11:30 PM Ticket #18714 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
10:38 PM Ticket #18713 (PySide crash while showing Modeller Comparative tool) created by chimerax-bug-report@…
[…]
6:40 PM Ticket #18712 ('BlobOutlineBox' object has no attribute 'data') created by chimerax-bug-report@…
[…]
6:28 PM Ticket #18711 (Crash closing tool with in-window status bar with PySide) created by chimerax-bug-report@…
[…]
3:56 PM Ticket #18710 (Save NifTi: 'NoneType' object is not subscriptable) created by gregdp@…
[…]
3:16 PM Ticket #18706 (Crash closing tool with in-window status bar with PySide) closed by pett
duplicate: Duplicate of #18630
2:51 PM Ticket #18705 (Multiple consecutive Find Cavities: dead models) closed by pett
can't reproduce: Unlike #18600, not after an initial failed install.
2:36 PM Ticket #18704 (Crash using open/save dialog) closed by pett
can't reproduce
2:34 PM Ticket #18703 (Crash in garbage collection) closed by pett
duplicate
2:23 PM Ticket #18700 (Not a ChimeraX session file) closed by Greg Couch
fixed: Not sure why this case was a RuntimeError instead of a UserError. So …
2:12 PM Ticket #18701 (pae is not a file in the archive) closed by Tom Goddard
fixed: The user tried to open a predicted distance error .npz file from Boltz …
2:04 PM Ticket #18709 (ffmpeg: Permission Denied) created by akennard@…
[…]
1:46 PM Ticket #18699 (Tried to charge HIS) closed by pett
can't reproduce
1:42 PM Ticket #18698 (Crash in event loop) closed by pett
can't reproduce
12:00 PM Training edited by Tom Goddard
(diff)
8:40 AM Ticket #18708 (Cannot resize UV/Vis plot) created by aligula.jeff@…
[…]
7:39 AM Ticket #18707 (PySide crash while showing Modeller Comparative tool) created by chimerax-bug-report@…
[…]
7:35 AM Ticket #18706 (Crash closing tool with in-window status bar with PySide) created by chimerax-bug-report@…
[…]
4:13 AM Ticket #18705 (Multiple consecutive Find Cavities: dead models) created by chimerax-bug-report@…
[…]
2:11 AM Ticket #18704 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
1:49 AM Ticket #18703 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Sep 3, 2025:

11:48 PM Ticket #18702 (alignment widget not properly destroying when tool closed) created by 2231014@…
[…]
9:18 PM Ticket #18701 (pae is not a file in the archive) created by chimerax-bug-report@…
[…]
6:18 PM Ticket #18700 (Not a ChimeraX session file) created by chimerax-bug-report@…
[…]
2:10 PM Ticket #18699 (Tried to charge HIS) created by chimerax-bug-report@…
[…]
11:05 AM Ticket #18698 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:44 AM Ticket #18697 (Unknown crash) closed by pett
can't reproduce
8:42 AM Ticket #18696 (Crash on Mac waking from sleep) closed by pett
duplicate
8:41 AM Ticket #18695 (Crash in event loop) closed by pett
can't reproduce
8:36 AM Ticket #18694 (Crash opening PDB file) closed by pett
can't reproduce
8:35 AM Ticket #18693 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
6:01 AM Ticket #18697 (Unknown crash) created by chimerax-bug-report@…
[…]
5:09 AM Ticket #18696 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
3:15 AM Ticket #18695 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:25 AM Ticket #18694 (Crash opening PDB file) created by chimerax-bug-report@…
[…]

Sep 2, 2025:

9:41 PM Ticket #18693 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
3:00 PM Ticket #18669 (Excess mmCIF bonds) closed by Greg Couch
nonchimerax: So that's a bug in the data, not the connectivity. Chain a and chain …
2:40 PM Ticket #18692 (Sequence viewer 'PySide6.QtWebEngineCore.QWebEngineUrlRequestInfo' ...) created by goddard@…
[…]
11:37 AM Ticket #18688 (AlphaFold JSON read as MOLE) closed by Tom Goddard
not a bug: To read AlphaFold 3 predicted aligned error .json files you need a …
11:29 AM Ticket #18683 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX crash report panel said what we know about this crash …
11:28 AM Ticket #18686 (Crash moving window between screens) closed by pett
duplicate
11:28 AM Ticket #18682 (Graphics error) closed by Tom Goddard
nonchimerax: Intel graphics driver crash on Windows.
11:27 AM Ticket #18685 (ArtiaX: 'RELION5SaveArgsWidget' object has no attribute 'model_combo') closed by pett
duplicate
11:20 AM Ticket #18681 (Crash in event loop) closed by pett
can't reproduce
10:54 AM Ticket #18680 (Crash in event loop) closed by pett
can't reproduce
10:51 AM Ticket #18679 (Crash in event loop) closed by pett
can't reproduce
10:47 AM Dev2025-9-8 created by Tom Goddard
10:45 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:35 AM Ticket #18678 (inadequate OpenGL) closed by pett
limitation
10:33 AM Ticket #18677 (Find Cavities on ARM Linux) closed by pett
limitation: Hi Bill, The Find Cavities tool carries out its search using the …
10:30 AM Ticket #18674 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX crash report panel says what we know about this crash …
10:28 AM Ticket #18672 (Crash in glBufferSubData) closed by Tom Goddard
nonchimerax: Adjusting threshold level of a 4 GB map (10003 float32) graphics …
10:24 AM Ticket #18676 (Crash opening PDB file) closed by pett
can't reproduce
10:16 AM Ticket #18671 (ffmpeg: Permission denied) closed by pett
duplicate
10:15 AM Ticket #18670 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229 Waiting for someone to report it from the daily …
10:08 AM Ticket #18691 (Preset file contains non-Unicode character) created by chimerax-bug-report@…
[…]
9:23 AM Ticket #18667 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
7:57 AM Ticket #18690 (SEQCROW "raw output" job queue: expected str, bytes or os.PathLike ...) created by mziemniak@…
[…] chimera-bug.png
6:54 AM Ticket #18689 (Volume 'session' attribute is None, Segmentations tool) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #18688 (AlphaFold JSON read as MOLE) created by shonna.mcbride@…
[…]
4:15 AM Ticket #18687 (Crash on Wayland querying mouse position) created by chimerax-bug-report@…
[…]
3:57 AM Ticket #18686 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
2:36 AM Ticket #18685 (ArtiaX: 'RELION5SaveArgsWidget' object has no attribute 'model_combo') created by chimerax-bug-report@…
[…]
2:31 AM Ticket #18684 (ArtiaX: 'RELION5SaveArgsWidget' object has no attribute 'model_combo') created by chimerax-bug-report@…
[…]
1:42 AM Ticket #18683 (Crash on Mac waking from sleep) created by anushka.ghosh@…
[…]
1:13 AM Ticket #18682 (Graphics error) created by chimerax-bug-report@…
[…]

Sep 1, 2025:

11:37 PM Ticket #18681 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:19 PM Ticket #18680 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:17 PM Ticket #18679 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:23 AM Ticket #18678 (inadequate OpenGL) created by chimerax-bug-report@…
[…]
9:46 AM Ticket #18677 (Find Cavities on ARM Linux) created by greenpearz@…
[…]
3:53 AM Ticket #18676 (Crash opening PDB file) created by chimerax-bug-report@…
[…]

Aug 31, 2025:

9:37 PM Ticket #18675 (Qt fatal error: GLOzone not found for unknown) created by shareefshaik187@…
[…]
7:43 PM Ticket #18674 (Crash on Mac waking from sleep) created by nuren.tasneem@…
[…]
3:25 PM Ticket #18673 (UnicodeDecodeError reading ORCA output) created by chimerax-bug-report@…
[…]
2:55 PM Ticket #18672 (Crash in glBufferSubData) created by chimerax-bug-report@…
[…]
1:02 AM Ticket #18671 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]

Aug 30, 2025:

9:12 AM Ticket #18670 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
[…]
3:34 AM Ticket #18669 (Excess mmCIF bonds) created by Tristan Croll
[…] bad_connectivity.jpg

Aug 29, 2025:

10:03 PM Ticket #18668 ('NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]
9:49 PM Ticket #18667 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
9:46 AM Ticket #18666 (Bad CSV file name) closed by pett
can't reproduce: Seems unlikely that C:\path\ is correct. If this happens more often I …
9:30 AM Ticket #18666 (Bad CSV file name) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #18659 (Session restore: LZ4F_decompress failed) closed by Greg Couch
fixed: Needs lz4 4.3.2 :-(, which is ChimeraX 1.10.
9:18 AM Ticket #18665 (ffmpeg: Permission denied) closed by pett
duplicate
9:15 AM Ticket #18664 (AlphaFold JSON read as MOLE) closed by pett
duplicate
9:12 AM Ticket #18663 (Crash moving window between screens) closed by pett
duplicate
9:10 AM Ticket #18662 (Kernel memory error) closed by pett
can't reproduce
9:06 AM Ticket #18661 (Crash after deep recursion) closed by pett
can't reproduce
9:04 AM Ticket #18660 (Varios math errors) closed by pett
can't reproduce: Probably very problematic structure
8:57 AM Ticket #18656 (Crash on exit) closed by pett
duplicate: From before the crash-on-exit fix went in.
8:51 AM Ticket #18665 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
5:13 AM Ticket #18664 (AlphaFold JSON read as MOLE) created by chimerax-bug-report@…
[…]
5:03 AM Ticket #18663 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
3:17 AM Ticket #18662 (Kernel memory error) created by chimerax-bug-report@…
[…]

Aug 28, 2025:

3:51 PM Ticket #18463 (Sequence identity selection broken) closed by pett
fixed: Fix: …
3:09 PM Ticket #18644 (Combining sessions error if global pseudobond groups in both) closed by pett
fixed: The global pseudobond manager needs to *not* clear existing groups if …
2:56 PM Ticket #18655 (Crash in glBufferSubData) closed by Tom Goddard
can't reproduce: Mac M2 Mac graphics driver crashed adjusting volume threshold on a 600 …
1:39 PM 2025-8-28 edited by Tom Goddard
(diff)
12:34 PM Ticket #18661 (Crash after deep recursion) created by chimerax-bug-report@…
[…]
12:24 PM Ticket #18660 (Varios math errors) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #18659 (Session restore: LZ4F_decompress failed) created by chimerax-bug-report@…
[…]
10:57 AM Ticket #18654 (Can't install ISOLDE) closed by pett
worksforme
10:53 AM Ticket #18658 (PySide: closing Renumber Residues) created by pett
Closing the Renumber Residues tool (either with the close button in …
10:53 AM Ticket #18657 (Tabs don't show for stacked docked tools in PySide 6.9.2) created by goddard@…
[…]
10:37 AM Ticket #18652 (Crash in chain_trace_atoms) closed by pett
can't reproduce
10:33 AM Ticket #18651 (Crash moving window between screens) closed by pett
duplicate
10:32 AM Ticket #18650 (Crash opening second copy of structure) closed by pett
can't reproduce: Why are there no "open" commands in the log?
10:16 AM Ticket #18648 (ffmpeg: Permission denied) closed by pett
duplicate
10:14 AM Ticket #18647 (Basic Actions: 'QEventLoop' object has no attribute 'exec_') closed by pett
duplicate
7:07 AM Ticket #18656 (Crash on exit) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #18655 (Crash in glBufferSubData) created by chimerax-bug-report@…
[…]
6:57 AM Ticket #18654 (Can't install ISOLDE) created by chimerax-bug-report@…
[…]
6:00 AM Ticket #18653 (PySide: crash destroying tool) created by chimerax-bug-report@…
[…]
3:05 AM Ticket #18652 (Crash in chain_trace_atoms) created by chimerax-bug-report@…
[…]
2:35 AM Ticket #18651 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
2:30 AM Ticket #18650 (Crash opening second copy of structure) created by chimerax-bug-report@…
[…]
2:21 AM Ticket #18649 (PICKLUSTER: 'Volume' object has no attribute 'chains') created by chimerax-bug-report@…
[…]
1:22 AM Ticket #18648 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
12:51 AM Ticket #18647 (Basic Actions: 'QEventLoop' object has no attribute 'exec_') created by chimerax-bug-report@…
[…]

Aug 27, 2025:

4:57 PM Ticket #18646 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) created by pett
[…]
3:05 PM Ticket #18645 (Boltz PermissionError: [Errno 1] Operation not permitted if results ...) closed by Tom Goddard
fixed: Fixed. Made results directory path absolute if it is given as a …
2:53 PM Ticket #18645 (Boltz PermissionError: [Errno 1] Operation not permitted if results ...) created by goddard@…
[…]
2:02 PM Ticket #18644 (Combining sessions error if global pseudobond groups in both) created by chimerax-bug-report@…
[…]
11:49 AM Ticket #18643 (Isolde sim start: OpenMMException: Error initializing context) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #18642 (ArrayMemoryError saving image) closed by Tom Goddard
limitation: User tried to save a 1 GB image and got an out of memory error, …
10:49 AM Ticket #18634 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: Possibly remote display dropped connection.
10:44 AM Ticket #18641 (surface enclose: 'Atoms' object has no attribute 'spec') closed by pett
fixed: Hi Mukundan, Thanks for reporting this problem. It is fixed now and …
10:22 AM Ticket #18639 (ChimeraX not starting on Windows Server 2016) closed by Greg Couch
limitation: From that error, it appears that the Qt user interface toolkit, that …
9:57 AM Ticket #18642 (ArrayMemoryError saving image) created by chimerax-bug-report@…
[…]
9:54 AM Ticket #18640 (ffmpeg: Permission denied) closed by pett
duplicate
9:52 AM Ticket #18638 (No space left on device saving command history) closed by pett
nonchimerax
9:50 AM Ticket #18637 (Crash at exit) closed by pett
can't reproduce
8:06 AM Ticket #18641 (surface enclose: 'Atoms' object has no attribute 'spec') created by mukundan.ragavan@…
[…]
6:15 AM Ticket #18640 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
6:14 AM Ticket #18639 (ChimeraX not starting on Windows Server 2016) created by juergen.eirich@…
[…] smime.p7s
4:22 AM Ticket #18638 (No space left on device saving command history) created by chimerax-bug-report@…
[…]
1:20 AM Ticket #18637 (Crash at exit) created by chimerax-bug-report@…
[…]

Aug 26, 2025:

7:59 PM Ticket #18636 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
7:05 PM Ticket #18635 (Crash creating HtmlView profile) created by chimerax-bug-report@…
[…]
6:37 PM Ticket #18634 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
5:45 PM Ticket #18633 (Atomic collections not restoring in sessions) closed by pett
duplicate: Duplicate of #18631
5:44 PM Ticket #18632 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
5:42 PM Ticket #18631 (Atomic collections not restoring in sessions) closed by pett
fixed: I got overzealous with moving scene support from Collections the other …
5:20 PM Ticket #18629 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
5:10 PM Ticket #18633 (Atomic collections not restoring in sessions) created by chimerax-bug-report@…
[…]
5:05 PM Ticket #18632 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
4:48 PM Ticket #18631 (Atomic collections not restoring in sessions) created by chimerax-bug-report@…
[…]
3:59 PM Ticket #2024 (Doc strings / optional arguments for aliases) closed by Greg Couch
fixed: Ah ha. Yes, help was being too helpful for aliases. That is fixed. …
10:53 AM Ticket #18630 (Crash closing tool with in-window status bar with PySide 6.9.2) created by goddard@…
[…]
10:41 AM Ticket #18629 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
10:41 AM Ticket #18610 (PySide6: a couple of errors) closed by pett
fixed: Yes, a popup QMenu needs an explicit parent. This is done in most …
10:37 AM 2025-8-28 created by Tom Goddard
10:36 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:18 AM Ticket #18623 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel says what we know about this crash: …
9:56 AM Ticket #18628 (ffmpeg: Permission denied) closed by pett
duplicate: Hi Ryan, This was a problem in 1.10, so if you de-installed that and …
9:54 AM Ticket #18627 (Crash using open/save dialog) closed by pett
can't reproduce
9:50 AM Ticket #18625 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
9:43 AM Ticket #18624 (MemoryError opening mmCIF files) closed by pett
duplicate
9:40 AM Ticket #18621 (Window close: tool_instance is None) closed by pett
can't reproduce
9:33 AM Ticket #18620 (Crash at/near startup) closed by pett
can't reproduce
4:41 AM Ticket #18628 (ffmpeg: Permission denied) created by abdel104@…
[…] Screenshot 2025-08-26 at 6.41.19 AM.png
3:24 AM Ticket #18627 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
1:41 AM Ticket #18626 (ArtiaX: slider: max == min) created by chimerax-bug-report@…
[…]

Aug 25, 2025:

10:23 PM Ticket #18473 ("alias usage" interfering with the actual alias) closed by Greg Couch
fixed: Fixed in [develop 233e6b940].
9:43 PM Ticket #18625 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
8:24 PM Ticket #18624 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
7:24 PM DeveloperMeetings edited by Tom Goddard
(diff)
7:23 PM Dev2025-8-25 edited by Tom Goddard
(diff)
7:08 PM Ticket #18623 (Crash on Mac waking from sleep) created by mrafiq@…
[…]
4:58 PM Ticket #18622 (Crash on exit if a floating tool window is shown, Mac Qt 6.9) created by goddard@…
[…]
4:23 PM Dev2025-8-25 edited by Tom Goddard
(diff)
3:44 PM Ticket #18619 (PY_SSIZE_T_CLEAN macro error in _mac_util.set_file_icon) closed by Zach Pearson
fixed: This was fixed by the 1.7 release. Use a newer build.
3:42 PM Ticket #18618 (ui view fourup: division by zero) closed by Zach Pearson
duplicate: Should be fixed in any recent build.
3:37 PM Ticket #18350 (PySide6 crash at exit) closed by Zach Pearson
can't reproduce: Works on my machine
3:37 PM Ticket #18352 (PySide6 crash closing tool) closed by Zach Pearson
can't reproduce: Which tool
3:32 PM Ticket #18474 (Closing floating side view window crashes PySide ChimeraX) closed by Zach Pearson
fixed: I was able to reproduce this on PyQt6 actually. It appears that on …
3:05 PM Dev2025-8-25 edited by Tom Goddard
(diff)
3:04 PM Dev2025-8-25 edited by Tom Goddard
(diff)
3:00 PM Ticket #18621 (Window close: tool_instance is None) created by chimerax-bug-report@…
[…]
2:24 PM Ticket #18617 (ChimeraX installer incompatibile with Windows 11 ARM64.) closed by Zach Pearson
fixed: Thanks! I fetched chimerax.iss.in from Plato and diff'd it with the …
12:19 PM Ticket #18614 (Session restore/reset: 'ClipCap' object has no attribute 'was_deleted') closed by Tom Goddard
duplicate: Restoring session where a clipped volume was missing and was not …
12:08 PM Ticket #18611 (Boltz tool: wrapped C/C++ object of type QFrame has been deleted) closed by Tom Goddard
fixed: Fixed. This error while installing Boltz is harmless. It installed …
11:55 AM Ticket #18620 (Crash at/near startup) created by chimerax-bug-report@…
[…]
11:32 AM Ticket #18619 (PY_SSIZE_T_CLEAN macro error in _mac_util.set_file_icon) created by chimerax-bug-report@…
[…]
10:12 AM Ticket #18618 (ui view fourup: division by zero) created by chimerax-bug-report@…
[…]
9:52 AM Ticket #18616 (Symbol not found: scipy/linalg/_fblas.cpython-311-darwin.so) closed by pett
duplicate
9:43 AM Ticket #18613 (Crash on Mac waking from sleep) closed by pett
duplicate
9:42 AM Ticket #18612 (Crash in garbage collection) closed by pett
duplicate
9:33 AM Ticket #18609 (ffmpeg: Permission denied) closed by pett
duplicate
8:06 AM Ticket #18617 (ChimeraX installer incompatibile with Windows 11 ARM64.) created by MARCINWOJCIECH.BALCERZYK@…
[…] [[Image(...)]] [[Image(...)]] …
4:06 AM Ticket #18616 (Symbol not found: scipy/linalg/_fblas.cpython-311-darwin.so) created by chimerax-bug-report@…
[…]
3:52 AM Ticket #18615 (Problem opening Gaussian 16 output file) created by mhvg1994@…
[…] tma.h2s-2-freq-b3lyp-d3-qzvppd.log
2:43 AM Ticket #18614 (Session restore/reset: 'ClipCap' object has no attribute 'was_deleted') created by chimerax-bug-report@…
[…]
1:28 AM Ticket #18613 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Aug 24, 2025:

11:53 PM Ticket #18612 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:15 PM Ticket #18611 (Boltz tool: wrapped C/C++ object of type QFrame has been deleted) created by Mahmoud.ragab@…
[…]
11:35 AM Ticket #18610 (PySide6: a couple of errors) created by chimerax-bug-report@…
[…]

Aug 23, 2025:

3:24 PM Ticket #18609 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]

Aug 22, 2025:

2:28 PM Ticket #18598 (Unable to fetch structure) closed by pett
fixed: Great! Glad it's working for you now. --Eric
2:14 PM Ticket #18599 (ViewDock: hbonds not working) closed by pett
fixed: Hi Andrii: thanks for catching this! It will be fixed in the next …
1:48 PM Ticket #18603 (Crash on Mac waking from sleep) closed by pett
duplicate
1:47 PM Ticket #18602 (MemoryError opening mmCIF files) closed by pett
duplicate
1:41 PM Ticket #18600 (Multiple consecutive Find Cavities: dead models) closed by pett
can't reproduce: Was after an initial "failed" install.
1:39 PM Ticket #18597 (Device loss detected in Present() and crash while running Boltz) closed by Tom Goddard
can't reproduce: Claims online suggest "Device loss detected in Present()" means the …
1:24 PM Ticket #18596 (Crash clearing Model Panel's QTreeWidget) closed by pett
can't reproduce
12:49 PM Ticket #18603 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:49 PM Ticket #18602 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
12:49 PM Ticket #18601 (Chimera Not Using Graphics Card) created by andhale@…
[…]
12:49 PM Ticket #18600 (Multiple consecutive Find Cavities: dead models) created by chimerax-bug-report@…
[…]
12:49 PM Ticket #18599 (ViewDock: hbonds not working) created by iamkaant@…
[…]
12:49 PM Ticket #18598 (Unable to fetch structure) created by mpatterson@…
[…]
12:49 PM Ticket #18597 (Device loss detected in Present() and crash while running Boltz) created by chimerax-bug-report@…
[…]
12:49 PM Ticket #18596 (Crash clearing Model Panel's QTreeWidget) created by chimerax-bug-report@…
[…]

Aug 21, 2025:

3:05 PM Ticket #18430 (Parsing mmCIF ma_qa_metric_local residue scores complains about ...) closed by pett
fixed: Fix: …
2:24 PM 2025-8-21 edited by Tom Goddard
(diff)
2:13 PM Ticket #18494 (Crash in Qt event loop after alphafold prediction) closed by Tom Goddard
can't reproduce: The crash report only says that it crashed in the Qt event loop. …
1:36 PM 2025-8-21 edited by Elaine Meng
(diff)
1:22 PM Ticket #18495 (traceback selecting residues by clicking in Profile Grid) closed by pett
fixed: Fix: …
1:04 PM Ticket #18493 (Deleting atoms: OSError: access violation) closed by pett
can't reproduce
12:38 PM Ticket #18495 (traceback selecting residues by clicking in Profile Grid) created by Elaine Meng
[…]
10:36 AM Ticket #18489 (ffmpeg: Permission denied) closed by pett
duplicate: Hi James, Thanks for reporting this problem. It is fixed in the …
6:57 AM Ticket #18494 (Crash in Qt event loop after alphafold prediction) created by akshitavinod00@…
[…]
3:08 AM Ticket #18493 (Deleting atoms: OSError: access violation) created by chimerax-bug-report@…
[…]

Aug 20, 2025:

8:47 PM Ticket #18492 (Bad XYZ file) created by chimerax-bug-report@…
[…]
8:34 PM Ticket #18491 (Crash using open/save dialog) created by tony.schaefer.chem@…
[…]
3:27 PM Ticket #18490 (Boltz: no supported GPU) created by xiangwang@…
[…]
2:12 PM ChangeLog edited by Tom Goddard
(diff)
1:07 PM Ticket #18489 (ffmpeg: Permission denied) created by jmberger@…
[…]
12:46 PM Ticket #18488 (AlphaFold prediction fails with a TensorFlow error) closed by Tom Goddard
fixed: Fixed. Apparently Google Colab updated TensorFlow which caused this …
12:44 PM Ticket #18488 (AlphaFold prediction fails with a TensorFlow error) created by Tom Goddard
Colabfold Colab tensorflow error Please cite ColabFold: Making …
12:21 PM Ticket #18487 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel explained what we know about this crash: …
12:18 PM Ticket #18484 (No selection outline) closed by Tom Goddard
fixed: Unfortunately that is a bug in your Mac AMD graphics driver. Apple is …
12:09 PM Ticket #18483 (glTexImage2D: out of memory) closed by Tom Goddard
can't reproduce: The usual expose event on status line at startup on Windows causes …
8:57 AM Ticket #18486 (Crash after loading trajectory frames) closed by pett
can't reproduce
8:50 AM Ticket #18482 (ffmpeg: Permission denied) closed by pett
duplicate
8:48 AM Ticket #18481 (Crash on Mac waking from sleep) closed by pett
duplicate
6:14 AM Ticket #18487 (Crash on Mac waking from sleep) created by george.nyasha.chiduza@…
[…]
3:16 AM Ticket #18486 (Crash after loading trajectory frames) created by chimerax-bug-report@…
[…]
2:49 AM Ticket #18485 (Recent Ubuntu update spams log) created by Tristan Croll
[…]

Aug 19, 2025:

3:36 PM Ticket #18484 (No selection outline) created by armack@…
[…]
1:00 PM Ticket #18390 (viewdock state (columns?) not saved in session) closed by pett
fixed: Fix: …
12:49 PM Ticket #18483 (glTexImage2D: out of memory) created by chimerax-bug-report@…
[…]
12:15 PM Ticket #18482 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
11:31 AM Ticket #18477 (Boltz: PytorchStreamReader failed reading zip archive: failed finding ...) closed by Tom Goddard
fixed: Fixed error where session is closed and Boltz panel tries to report …
11:02 AM Dev2025-8-25 created by Tom Goddard
11:01 AM 2025-8-21 created by Tom Goddard
10:59 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:49 AM Ticket #18481 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:56 AM Ticket #18480 ('pip install pyKVFinder' fails with empty error message) closed by pett
not a bug: Thanks for letting me know! --Eric
9:19 AM Ticket #18479 (Crash on Mac waking from sleep) closed by pett
duplicate
9:17 AM Ticket #18478 (ffmpeg: Permission denied) closed by pett
duplicate
9:13 AM Ticket #18476 (Crash on Mac waking from sleep) closed by pett
duplicate
8:04 AM Ticket #18480 ('pip install pyKVFinder' fails with empty error message) created by yxw2042@…
[…]
6:05 AM Ticket #18479 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:11 AM Ticket #18478 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
2:27 AM Ticket #18477 (Boltz: PytorchStreamReader failed reading zip archive: failed finding ...) created by george.nyasha.chiduza@…
[…]

Aug 18, 2025:

11:18 PM Ticket #18476 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:37 PM Ticket #18475 (Crash on close after closing floating interfaces panel with PySide) created by goddard@…
[…]
6:24 PM Ticket #18474 (Closing floating side view window crashes PySide ChimeraX) created by goddard@…
[…]
5:03 PM Ticket #18473 ("alias usage" interfering with the actual alias) created by olibclarke@…
[…] Hi, I'm testing out the "usage" command for aliases, and I've …
4:12 PM Dev2025-8-18 edited by Tom Goddard
(diff)
4:10 PM Dev2025-8-18 edited by Tom Goddard
(diff)
3:12 PM Dev2025-8-18 edited by Tom Goddard
(diff)
2:20 PM Ticket #18437 (Crash in python_instances_of_class after "build join" command) closed by pett
duplicate: This problem is indeed fixed in current versions of ChimeraX.
2:16 PM Ticket #18444 ("PDB" file contains non-ASCII character or control character) closed by pett
not a bug: The user renamed a PyMOL session file to a ".pdb" suffix and tried to …
2:13 PM Ticket #18447 (Error restoring session: self.bond_rotaters.values(): ...) closed by pett
duplicate: Duplicate of #18447
2:04 PM C++Features edited by pett
(diff)
2:04 PM C++Features edited by pett
(diff)
2:02 PM C++Features edited by pett
(diff)
1:55 PM Ticket #18472 (Boltz: The GPU device instance has been suspended) closed by Tom Goddard
nonchimerax: The ChimeraX log shows the error from Windows "The GPU device instance …
1:44 PM Dev2025-8-18 created by Tom Goddard
1:10 PM Ticket #18472 (Boltz: The GPU device instance has been suspended) created by biq2001@…
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12:14 PM Ticket #18470 (cartoon style modeStrand plank: 'StrandPlank' object has no attribute ...) closed by Tom Goddard
not a bug: The modeStrand option of the cartoon style command was never fully …
11:55 AM Ticket #18471 (Mac Accessibility Hover Text: "Cell requested for row 0 is out of ...) closed by Tom Goddard
nonchimerax
11:48 AM Ticket #18471 (Mac Accessibility Hover Text: "Cell requested for row 0 is out of ...) created by goddard@…
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11:43 AM Ticket #18470 (cartoon style modeStrand plank: 'StrandPlank' object has no attribute ...) created by hsc43@…
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11:29 AM Ticket #18460 (BoltzMSA/index: No such file or directory) closed by Tom Goddard
fixed
11:14 AM Ticket #18456 (Could not make opengl context current) closed by Tom Goddard
nonchimerax: The ChimeraX Log panel explained why ChimeraX could not show …
11:12 AM Ticket #18454 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
11:11 AM Ticket #18469 (KVFinder on old MacOS) closed by pett
limitation: Hi Biao, Unfortunately, the underlying pyKVFinder program that …
11:07 AM Ticket #18467 (~AppData\Local: Permission denied) closed by pett
can't reproduce
11:00 AM Ticket #18465 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229
10:59 AM Ticket #18156 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229
10:55 AM Ticket #18464 (Regular PDB file opened in MD Viewer) closed by pett
duplicate
10:40 AM Ticket #18462 (Segmentations: chimerax misspelled in import statement) closed by pett
duplicate: Duplicate of #18313
10:37 AM Ticket #18461 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
10:34 AM Ticket #18459 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
10:31 AM Ticket #18458 (Proofpoint Essentials - Quarantine Digest) closed by pett
not a bug
10:28 AM Ticket #18455 (Crash on Mac waking from sleep) closed by pett
duplicate
10:14 AM Ticket #18469 (KVFinder on old MacOS) created by biq2001@…
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9:53 AM Ticket #18468 (Crash in garbage collection) created by chhandosee@…
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8:42 AM Ticket #18467 (~AppData\Local: Permission denied) created by chimerax-bug-report@…
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5:30 AM Ticket #18466 (XMAS: error parsing results from pLink) created by emilio.cirri@…
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4:15 AM Ticket #18465 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
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2:59 AM Ticket #18464 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…
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2:57 AM Ticket #18463 (Sequence identity selection broken) created by Tristan Croll
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Aug 17, 2025:

9:43 PM Ticket #18462 (Segmentations: chimerax misspelled in import statement) created by chimerax-bug-report@…
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7:21 PM Ticket #18461 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
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6:35 PM Ticket #18460 (BoltzMSA/index: No such file or directory) created by jacjagoabc@…
[…]
6:31 PM Ticket #18459 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
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5:01 AM Ticket #18458 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
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12:33 AM Ticket #2024 (Doc strings / optional arguments for aliases) reopened by Greg Couch
That's reasonable. I'm partial to "usage aliases".

Aug 16, 2025:

7:56 PM Ticket #18457 (Crash showing/using Side View) created by chimerax-bug-report@…
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8:21 AM Ticket #18456 (Could not make opengl context current) created by yaman.gokcek@…
[…]
6:05 AM Ticket #18455 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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