![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 months ago
Closed 2 months ago
#18762 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.6.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00000001fa11e0c0 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PIL._imagingmath (total: 53)
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"procRole" : "Background",
"version" : 2,
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"modelCode" : "Mac16,9",
"coalitionID" : 1076,
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"captureTime" : "2025-09-10 11:50:28.6667 -0500",
"codeSigningMonitor" : 2,
"incident" : "3D94F3CC-4BFD-4304-8D7E-D3A6ADDAB5DD",
"pid" : 13162,
"translated" : false,
"cpuType" : "ARM-64",
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"procLaunch" : "2025-09-09 18:31:51.0185 -0500",
"procStartAbsTime" : 6447325107643,
"procExitAbsTime" : 6709746512489,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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"parentPid" : 68691,
"coalitionName" : "com.apple.Terminal",
"crashReporterKey" : "287DA2D6-7547-0DC4-2358-56B008C864A6",
"appleIntelligenceStatus" : {"state":"available"},
"responsiblePid" : 2087,
"responsibleProc" : "Terminal",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "F6A67EAF-5CDC-4B8E-859F-215FE9EEEBE6",
"wakeTime" : 1,
"sleepWakeUUID" : "766393B4-2258-4E67-A18C-7040CE40E822",
"sip" : "enabled",
"vmRegionInfo" : "0x8f0000081c0 is not in any region. Bytes after previous region: 9345848869313 Bytes before following region: 95726231060032\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
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"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":13162},
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===== Log before crash start =====
Computing secondary structure
> color #1 gray(150)
> matchmaker #1.2-20 to #1.1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.2), sequence
alignment score = 1434.7
RMSD between 267 pruned atom pairs is 0.276 angstroms; (across all 279 pairs:
1.226)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.3), sequence
alignment score = 1434.7
RMSD between 272 pruned atom pairs is 0.332 angstroms; (across all 279 pairs:
0.714)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.4), sequence
alignment score = 1434.7
RMSD between 269 pruned atom pairs is 0.320 angstroms; (across all 279 pairs:
0.918)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.5), sequence
alignment score = 1434.7
RMSD between 270 pruned atom pairs is 0.345 angstroms; (across all 279 pairs:
1.090)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.6), sequence
alignment score = 1434.7
RMSD between 267 pruned atom pairs is 0.275 angstroms; (across all 279 pairs:
1.951)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.7), sequence
alignment score = 1434.7
RMSD between 267 pruned atom pairs is 0.274 angstroms; (across all 279 pairs:
1.207)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.8), sequence
alignment score = 1441.9
RMSD between 270 pruned atom pairs is 0.287 angstroms; (across all 279 pairs:
1.142)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.9), sequence
alignment score = 1434.7
RMSD between 269 pruned atom pairs is 0.318 angstroms; (across all 279 pairs:
1.097)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.10), sequence
alignment score = 1434.7
RMSD between 268 pruned atom pairs is 0.314 angstroms; (across all 279 pairs:
1.274)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.11), sequence
alignment score = 1434.7
RMSD between 270 pruned atom pairs is 0.390 angstroms; (across all 279 pairs:
1.025)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.12), sequence
alignment score = 1434.7
RMSD between 269 pruned atom pairs is 0.286 angstroms; (across all 279 pairs:
1.301)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.13), sequence
alignment score = 1434.7
RMSD between 269 pruned atom pairs is 0.279 angstroms; (across all 279 pairs:
1.128)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.14), sequence
alignment score = 1425.7
RMSD between 268 pruned atom pairs is 0.340 angstroms; (across all 279 pairs:
1.149)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.15), sequence
alignment score = 1434.7
RMSD between 270 pruned atom pairs is 0.294 angstroms; (across all 279 pairs:
1.054)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.16), sequence
alignment score = 1434.7
RMSD between 269 pruned atom pairs is 0.374 angstroms; (across all 279 pairs:
1.151)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.17), sequence
alignment score = 1434.7
RMSD between 268 pruned atom pairs is 0.291 angstroms; (across all 279 pairs:
0.826)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.18), sequence
alignment score = 1434.7
RMSD between 269 pruned atom pairs is 0.430 angstroms; (across all 279 pairs:
1.339)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.19), sequence
alignment score = 1434.7
RMSD between 273 pruned atom pairs is 0.312 angstroms; (across all 279 pairs:
0.538)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.20), sequence
alignment score = 1434.7
RMSD between 270 pruned atom pairs is 0.338 angstroms; (across all 279 pairs:
0.808)
> color #1:ile paleturquoise target a
> color #1:leu lightsalmon target a
> color #1:val khaki target a
> color #1:ala yellowgreen target a
> color #1:met thistle target a
> color #1:thr aquamarine target a
> color #1:phe plum target a
> color #1:tyr lightpink target a
> show #1:thr,met,ala,leu,val,ile,phe,tyr
> cartoon suppressBackboneDisplay false
> label #1.1 text {0.label_one_letter_code}{0.number}{0.insertion_code}
> label onTop false
> ui tool show "Side View"
> open pseudobonds/final_N_N.pb
Opened Pseudobonds final_N_N.pb, 397 bonds
> open pseudobonds/final_N_Methyl.pb
Opened Pseudobonds final_N_Methyl.pb, 842 bonds
> open pseudobonds/final_N_Aro.pb
Opened Pseudobonds final_N_Aro.pb, 41 bonds
> open pseudobonds/final_Methyl_Methyl.pb
Opened Pseudobonds final_Methyl_Methyl.pb, 788 bonds
> open pseudobonds/final_Methyl_Aro.pb
Opened Pseudobonds final_Methyl_Aro.pb, 172 bonds
> open pseudobonds/final_Aro_Aro.pb
Opened Pseudobonds final_Aro_Aro.pb, 2 bonds
> open pseudobonds/final_N_Ali.pb
Opened Pseudobonds final_N_Ali.pb, 89 bonds
> open pseudobonds/final_Ali_Ali.pb
Opened Pseudobonds final_Ali_Ali.pb, 20 bonds
> open pseudobonds/final_Ali_Aro.pb
Opened Pseudobonds final_Ali_Aro.pb, 9 bonds
> open pseudobonds/final_Ali_Methyl.pb
Opened Pseudobonds final_Ali_Methyl.pb, 180 bonds
> open pseudobonds/final_poor.pb
Opened Pseudobonds final_poor.pb, 37 bonds
> open pseudobonds/final_long.pb
Opened Pseudobonds final_long.pb, 124 bonds
> open pseudobonds/final_pdiff.pb
Opened Pseudobonds final_pdiff.pb, 88 bonds
> open pseudobonds/final_short.pb
Opened Pseudobonds final_short.pb, 92 bonds
> open pseudobonds/final_viol_upls.pb
Opened Pseudobonds final_viol_upls.pb, 135 bonds
> open pseudobonds/BRAF17M_TVESD.pb
Opened Pseudobonds BRAF17M_TVESD.pb, 1421 bonds
> open pseudobonds/manH.pb
Opened Pseudobonds manH.pb, 16 bonds
> name sidechains
> #1:476,562,704,450,575,619,551,698,699,700,570,680,552,687,690,499,475,507,483,591,547,578,473,558,688,574,593,682,677,701,559,478,581,501,531
> show sidechains
> hide H
> show #1.1@H,N,C target a
> open pseudobonds/hbond.pb
Opened Pseudobonds hbond.pb, 88 bonds
> name hbond
> #1.1:491,495,492,496,493,497,494,498,499,500,501,502,503,504,505,506,507,536,540,537,541,538,542,539,544,550,554,551,555,552,556,553,557,558,559,560,561,562,563,565,566,567,569,622,626,635,639,636,640,637,641,638,642,643,644,645,646,647,648,649,650,662,666,663,667,664,668,665,669,670,671,686,690,687,691,688,692,689,693,694,695,696,697,708,712,709,713,710,714,711,715,716,717,718,719,720,721,722,723,458,475,461,473,470,484,471,464,472,482,460,474,480,481,529,483,527,525,485,591,583,589,585@O,N,C
> show hbond target a
> open ../final.pdb maxModels 1
Chain information for final.pdb #20
---
Chain | Description
A | No description available
> rename #20 angle_restraints
> hide #20 target a
> color #20 gray(150)
> open ../final.pdb maxModels 1
Chain information for final.pdb #21
---
Chain | Description
A | No description available
> rename #21 rama_outliers
> hide #21 target a
> color #21 gray(150)
> name phipsi
> #20:448,449,450,451,452,453,454,456,457,458,459,460,461,469,470,471,472,480,481,482,483,484,486,487,489,491,492,493,494,495,496,497,498,499,500,501,502,503,504,505,506,507,509,510,512,513,514,515,516,518,519,520,522,525,526,527,528,529,530,536,537,538,539,540,541,543,544,546,547,548,550,551,552,553,554,555,556,557,558,559,560,561,562,565,566,567,568,569,570,571,572,573,574,575,581,582,583,590,591,592,593,594,595,605,613,614,615,616,618,619,621,622,623,624,625,626,627,628,630,633,634,635,636,637,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,677,678,679,680,685,688,689,690,691,692,693,694,695,696,697,699,700,701,702,703,704,705,706,708,709,710,711,712,713,714,715,716,717,718,719,720,721,533,532,463,465
> color phipsi purple target c
> name chi1chi2
> #20:447,450,452,457,463,472,476,480,484,485,495,498,505,510,513,514,516,517,519,525,527,531,537,538,541,548,550,553,554,556,564,566,567,568,572,573,577,582,583,584,585,592,597,613,617,618,619,620,625,627,633,635,640,644,646,647,649,650,654,656,659,665,666,667,668,674,678,685,689,692,693,697,707,710,711,714,717,721
> show chi1chi2 target a
> color chi1chi2 navy target a
> hide #20@H*,N,O target a
> color byhetero target a
> name viol_phipsi #20:481,540
> color viol_phipsi mediumpurple target c
> name dissallowed_phipsi
> #21:446,460,467,478,493,509,522,524,525,535,550,574,578,585,594,596,606,610,611,630,683
> color dissallowed_phipsi mediumvioletred target c
> name dissallowed_chi1chi2
> #21:447,448,449,451,454,456,461,468,473,475,477,479,483,495,496,498,499,500,505,506,509,510,512,515,522,524,539,540,545,547,549,551,552,558,559,562,566,570,575,578,580,581,587,591,594,595,599,600,601,602,610,611,612,613,623,626,629,631,633,638,648,653,656,660,662,677,680,684,687,688,689,690,695,698,699,700,701,702,703,704,707,709,713,715,717
> show dissallowed_chi1chi2 target a
> color dissallowed_chi1chi2 medium violet red target a
> hide #21@H*,N,O target a
> color byhetero target a
> open ../final.pdb maxModels 1
Chain information for final.pdb #22
---
Chain | Description
A | No description available
> rename #22 noes
> hide #22 target a
> color #22 gray(150)
> color name c0 rgb(255,205,0)
Color 'c0' is opaque: rgb(100%, 80.4%, 0%) hex: #ffcd00
> color name c2 rgb(156,217,59)
Color 'c2' is opaque: rgb(61.2%, 85.1%, 23.1%) hex: #9cd93b
> color name c4 rgb(52,182,121)
Color 'c4' is opaque: rgb(20.4%, 71.4%, 47.5%) hex: #34b679
> color name c6 rgb(42,117,142)
Color 'c6' is opaque: rgb(16.5%, 45.9%, 55.7%) hex: #2a758e
> color name c8 rgb(59,81,139)
Color 'c8' is opaque: rgb(23.1%, 31.8%, 54.5%) hex: #3b518b
> color name c10 rgb(20,64,110)
Color 'c10' is opaque: rgb(7.84%, 25.1%, 43.1%) hex: #14406e
> color
> #22:445,446,465,466,467,477,532,533,534,536,580,585,586,587,588,596,599,600,601,602,603,604,605,606,607,608,609,611,612,616,683
> c0 target ac
> color #22:454,469,478,464,476,535,615,630,631,684,723 c2 target ac
> color #22:449,451,455,456,479,450,462,493,576,628,629,685,688 c4 target ac
> color
> #22:509,531,545,547,579,593,597,658,660,663,672,675,677,702,706,716,719,448,461,522,539,575,594,614,623,634,636,662,673,687,722
> c6 target ac
> color
> #22:468,510,515,544,581,598,664,709,470,512,524,653,657,661,682,695,713,720
> c8 target ac
> color
> #22:447,452,457,458,459,460,463,471,472,473,474,475,480,481,482,483,484,485,486,487,488,489,491,494,495,496,497,498,499,500,501,502,503,504,505,506,507,508,511,513,514,516,517,518,519,520,521,525,526,527
> c10 target ac
> color
> #22:528,529,530,537,538,540,541,542,543,546,548,549,550,551,552,553,554,555,556,557,558,559,560,561,562,563,564,565,566,567,568,569,570,571,572,573,574,577,578,582,583,584,589,590,591,592,595,610,613,617
> c10 target ac
> color
> #22:618,619,620,621,624,625,626,627,633,635,637,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,654,656,659,665,666,667,668,669,670,671,674,678,679,680,681,689,690,691,692,693,694,696,697,698
> c10 target ac
> color #22:699,700,701,703,704,707,710,711,712,714,715,717,718,721 c10 target
> ac
> name sidechains
> #22:476,562,704,450,575,619,551,698,699,700,570,680,552,687,690,499,475,507,483,591,547,578,473,558,688,574,593,682,677,701,559,478,581,501,531
> show #22:thr,met,ala,leu,val,ile,phe,tyr
> hide #22@H*
> color byhetero
> key c0:0 c2:2 c4:4 c6:6 c8:8 c10:10 fontSize 14 colorTreatment distinct
> numericLabelSpacing equal
> key size 0.25000,0.03000
executed final.cxc
Computing secondary structure
> set bgColor white
> hide #1.2-20#!1.1 target m
> hide #!1 models
> show #!1.1 models
> show #1.2 models
> hide #1.2 models
> show #1.3 models
> hide #1.3 models
> show #1.4 models
> hide #1.4 models
> show #1.4 models
> hide #1.4 models
> show #1.5 models
> hide #!1.1 models
> hide #!1 models
> show #!1 models
> hide #2-23 target m
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #3 models
> show #2-23 target m
> hide #20 models
> hide #19 models
> show #19 models
> hide #18 models
> show #18 models
> show #20 target m
> hide #1.5 models
> show #1.5 models
> show #!1.1 models
> hide #1.5 models
> show #2-23 target m
> hide #12 models
> show #12 models
> hide #3 models
> show #3 models
> hide #7 models
> show #7 models
> hide #12 models
> show #12 models
> hide #18 models
> show #18 models
> hide #17 models
> show #17 models
> hide #20 models
> show #20 models
> hide #20 models
> show #20 models
> hide #6 models
> show #6 models
> hide #8 models
> show #8 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> hide #20 models
> show #20 models
> hide #12 models
> show #12 models
> hide #12 models
> show #12 models
> open
> /Volumes/common/Jitendra/Braf/activeBRAF/CYANA/CHAPERONE4/CYANA/TVESD/cyana-
> tvesd-6_1/4MNE-16M-chainC_Active.pdb
Chain information for 4MNE-16M-chainC_Active.pdb #24
---
Chain | Description
A | No description available
8 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> ui tool show Matchmaker
> matchmaker #!24 to #1.1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker final.pdb, chain A (#1.1) with 4MNE-16M-chainC_Active.pdb, chain A
(#24), sequence alignment score = 1233.9
RMSD between 226 pruned atom pairs is 1.150 angstroms; (across all 260 pairs:
1.875)
> show #20-22#!24#!1.1 atoms
> hide H
> hide #!24 models
> hide #2-23 target m
> show #2 models
> hide #2 models
> show #3 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open final.cxc
> open ../final.pdb
Chain information for final.pdb
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A | No description available
Computing secondary structure
[Repeated 19 time(s)]
> color #1 gray(150)
> matchmaker #1.2-20 to #1.1
Computing secondary structure
[Repeated 19 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.2), sequence
alignment score = 1440.7
RMSD between 266 pruned atom pairs is 0.243 angstroms; (across all 279 pairs:
1.019)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.3), sequence
alignment score = 1440.7
RMSD between 268 pruned atom pairs is 0.388 angstroms; (across all 279 pairs:
1.010)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.4), sequence
alignment score = 1440.7
RMSD between 271 pruned atom pairs is 0.397 angstroms; (across all 279 pairs:
0.723)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.5), sequence
alignment score = 1440.7
RMSD between 274 pruned atom pairs is 0.291 angstroms; (across all 279 pairs:
0.669)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.6), sequence
alignment score = 1440.7
RMSD between 268 pruned atom pairs is 0.263 angstroms; (across all 279 pairs:
1.600)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.7), sequence
alignment score = 1440.7
RMSD between 270 pruned atom pairs is 0.419 angstroms; (across all 279 pairs:
0.875)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.8), sequence
alignment score = 1440.7
RMSD between 269 pruned atom pairs is 0.287 angstroms; (across all 279 pairs:
0.960)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.9), sequence
alignment score = 1440.7
RMSD between 267 pruned atom pairs is 0.286 angstroms; (across all 279 pairs:
0.871)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.10), sequence
alignment score = 1440.7
RMSD between 269 pruned atom pairs is 0.290 angstroms; (across all 279 pairs:
1.447)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.11), sequence
alignment score = 1440.7
RMSD between 269 pruned atom pairs is 0.277 angstroms; (across all 279 pairs:
1.129)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.12), sequence
alignment score = 1440.7
RMSD between 268 pruned atom pairs is 0.349 angstroms; (across all 279 pairs:
0.918)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.13), sequence
alignment score = 1440.7
RMSD between 269 pruned atom pairs is 0.306 angstroms; (across all 279 pairs:
1.038)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.14), sequence
alignment score = 1440.7
RMSD between 272 pruned atom pairs is 0.340 angstroms; (across all 279 pairs:
1.067)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.15), sequence
alignment score = 1440.7
RMSD between 268 pruned atom pairs is 0.275 angstroms; (across all 279 pairs:
1.185)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.16), sequence
alignment score = 1440.7
RMSD between 267 pruned atom pairs is 0.382 angstroms; (across all 279 pairs:
0.946)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.17), sequence
alignment score = 1440.7
RMSD between 272 pruned atom pairs is 0.363 angstroms; (across all 279 pairs:
0.662)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.18), sequence
alignment score = 1440.7
RMSD between 271 pruned atom pairs is 0.389 angstroms; (across all 279 pairs:
0.933)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.19), sequence
alignment score = 1440.7
RMSD between 271 pruned atom pairs is 0.313 angstroms; (across all 279 pairs:
0.781)
Matchmaker final.pdb, chain A (#1.1) with final.pdb, chain A (#1.20), sequence
alignment score = 1440.7
RMSD between 270 pruned atom pairs is 0.303 angstroms; (across all 279 pairs:
0.797)
> color #1:ile paleturquoise target a
> color #1:leu lightsalmon target a
> color #1:val khaki target a
> color #1:ala yellowgreen target a
> color #1:met thistle target a
> color #1:thr aquamarine target a
> color #1:phe plum target a
> color #1:tyr lightpink target a
> show #1:thr,met,ala,leu,val,ile,phe,tyr
> cartoon suppressBackboneDisplay false
> label #1.1 text {0.label_one_letter_code}{0.number}{0.insertion_code}
> label onTop false
> ui tool show "Side View"
> open pseudobonds/final_N_N.pb
Opened Pseudobonds final_N_N.pb, 399 bonds
> open pseudobonds/final_N_Methyl.pb
Opened Pseudobonds final_N_Methyl.pb, 850 bonds
> open pseudobonds/final_N_Aro.pb
Opened Pseudobonds final_N_Aro.pb, 37 bonds
> open pseudobonds/final_Methyl_Methyl.pb
Opened Pseudobonds final_Methyl_Methyl.pb, 781 bonds
> open pseudobonds/final_Methyl_Aro.pb
Opened Pseudobonds final_Methyl_Aro.pb, 173 bonds
> open pseudobonds/final_Aro_Aro.pb
Opened Pseudobonds final_Aro_Aro.pb, 2 bonds
> open pseudobonds/final_N_Ali.pb
Opened Pseudobonds final_N_Ali.pb, 86 bonds
> open pseudobonds/final_Ali_Ali.pb
Opened Pseudobonds final_Ali_Ali.pb, 17 bonds
> open pseudobonds/final_Ali_Aro.pb
Opened Pseudobonds final_Ali_Aro.pb, 10 bonds
> open pseudobonds/final_Ali_Methyl.pb
Opened Pseudobonds final_Ali_Methyl.pb, 194 bonds
> open pseudobonds/final_poor.pb
Opened Pseudobonds final_poor.pb, 23 bonds
> open pseudobonds/final_long.pb
Opened Pseudobonds final_long.pb, 115 bonds
> open pseudobonds/final_pdiff.pb
Opened Pseudobonds final_pdiff.pb, 92 bonds
> open pseudobonds/final_short.pb
Opened Pseudobonds final_short.pb, 92 bonds
> open pseudobonds/final_viol_upls.pb
Opened Pseudobonds final_viol_upls.pb, 117 bonds
> open pseudobonds/BRAF17M_TVESD.pb
Opened Pseudobonds BRAF17M_TVESD.pb, 1421 bonds
> open pseudobonds/manH.pb
Opened Pseudobonds manH.pb, 16 bonds
> name sidechains
> #1:562,704,450,575,619,551,698,699,700,570,680,552,687,690,499,475,507,483,578,591,547,473,558,682,574,593,677,701,559,478,581,501,531
> show sidechains
> hide H
> show #1.1@H,N,C target a
> open pseudobonds/hbond.pb
Opened Pseudobonds hbond.pb, 91 bonds
> name hbond
> #1.1:491,495,492,496,493,497,494,498,499,500,501,502,503,504,505,506,507,536,540,537,541,538,542,539,544,550,554,551,555,552,556,553,557,558,559,560,561,562,563,565,566,567,569,622,626,635,639,636,640,637,641,638,642,643,644,645,646,647,648,649,650,662,666,663,667,664,668,665,669,670,671,686,690,687,691,688,692,689,693,694,695,696,697,708,712,709,713,710,714,711,715,716,717,718,719,720,721,722,723,458,475,461,473,464,471,466,469,470,484,463,472,482,460,474,480,481,529,483,527,525,485,591,583,589,585@O,N,C
> show hbond target a
> open ../final.pdb maxModels 1
Chain information for final.pdb #20
---
Chain | Description
A | No description available
> rename #20 angle_restraints
> hide #20 target a
> color #20 gray(150)
> open ../final.pdb maxModels 1
Chain information for final.pdb #21
---
Chain | Description
A | No description available
> rename #21 rama_outliers
> hide #21 target a
> color #21 gray(150)
> name phipsi
> #20:448,449,450,451,452,453,454,456,457,458,459,460,461,468,469,470,471,472,480,481,482,483,484,486,487,489,491,492,493,494,495,496,497,498,499,500,501,502,503,504,505,506,507,509,510,512,513,514,515,516,518,519,520,522,525,526,527,528,529,530,536,537,538,539,540,541,543,544,546,547,548,550,551,552,553,554,555,556,557,558,559,560,561,562,565,566,567,568,569,570,571,572,573,574,575,581,582,583,590,591,592,593,594,595,605,613,614,615,616,618,619,621,622,623,624,625,626,627,628,630,633,634,635,636,637,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,677,678,679,680,685,688,689,690,691,692,693,694,695,696,697,699,700,701,702,703,704,705,706,708,709,710,711,712,713,714,715,716,717,718,719,720,721,533,532,463,465
> color phipsi purple target c
> name chi1chi2
> #20:447,450,452,457,463,468,472,476,480,484,485,495,498,505,510,513,514,516,517,519,525,527,531,537,538,541,548,550,553,554,556,564,566,567,568,572,573,577,582,583,584,585,592,597,613,617,618,619,620,625,627,633,635,640,644,646,647,649,650,654,656,659,665,666,667,668,674,678,685,689,692,693,697,707,710,711,714,717,721
> show chi1chi2 target a
> color chi1chi2 navy target a
> hide #20@H*,N,O target a
> color byhetero target a
> name viol_phipsi #20:540,548
> color viol_phipsi mediumpurple target c
> name dissallowed_phipsi
> #21:446,456,460,467,493,522,524,525,535,550,574,578,585,588,594,596,606,610,611,612,630,683
> color dissallowed_phipsi mediumvioletred target c
> name dissallowed_chi1chi2
> #21:447,448,449,451,454,456,461,462,468,473,475,477,483,493,495,496,498,499,500,505,506,509,510,512,515,522,524,530,533,539,540,547,551,552,558,559,562,565,566,570,575,578,581,584,586,594,595,599,600,601,610,612,613,623,626,631,633,636,638,648,656,662,677,680,682,687,689,690,695,698,699,702,703,704,707,709,715,717
> show dissallowed_chi1chi2 target a
> color dissallowed_chi1chi2 medium violet red target a
> hide #21@H*,N,O target a
> color byhetero target a
> open ../final.pdb maxModels 1
Chain information for final.pdb #22
---
Chain | Description
A | No description available
> rename #22 noes
> hide #22 target a
> color #22 gray(150)
> color name c0 rgb(255,205,0)
Color 'c0' is opaque: rgb(100%, 80.4%, 0%) hex: #ffcd00
> color name c2 rgb(156,217,59)
Color 'c2' is opaque: rgb(61.2%, 85.1%, 23.1%) hex: #9cd93b
> color name c4 rgb(52,182,121)
Color 'c4' is opaque: rgb(20.4%, 71.4%, 47.5%) hex: #34b679
> color name c6 rgb(42,117,142)
Color 'c6' is opaque: rgb(16.5%, 45.9%, 55.7%) hex: #2a758e
> color name c8 rgb(59,81,139)
Color 'c8' is opaque: rgb(23.1%, 31.8%, 54.5%) hex: #3b518b
> color name c10 rgb(20,64,110)
Color 'c10' is opaque: rgb(7.84%, 25.1%, 43.1%) hex: #14406e
> color
> #22:445,446,465,466,467,476,477,533,534,536,580,585,586,587,588,596,599,600,601,602,603,604,605,606,607,608,609,611,612,616,683
> c0 target ac
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> c10 target ac
> color
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> c10 target ac
> color
> #22:620,621,624,625,626,627,633,635,637,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,654,656,659,665,666,667,668,669,670,671,674,678,679,680,681,682,689,690,691,692,693,694,695,696,697,698
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> hide #22@H*
> color byhetero
> key c0:0 c2:2 c4:4 c6:6 c8:8 c10:10 fontSize 14 colorTreatment distinct
> numericLabelSpacing equal
> key size 0.25000,0.03000
executed final.cxc
Computing secondary structure
[Repeated 2 time(s)]
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M4 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac Studio
Model Identifier: Mac16,9
Model Number: Z1CD0013MLL/A
Chip: Apple M4 Max
Total Number of Cores: 14 (10 performance and 4 efficiency)
Memory: 36 GB
System Firmware Version: 11881.140.96
OS Loader Version: 11881.140.96
Software:
System Software Overview:
System Version: macOS 15.6.1 (24G90)
Kernel Version: Darwin 24.6.0
Time since boot: 7 days, 13 hours, 56 minutes
Graphics/Displays:
Apple M4 Max:
Chipset Model: Apple M4 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 32
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
DELL U3223QE:
Resolution: 6016 x 3384
UI Looks like: 3008 x 1692 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 2 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 2 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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