![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Feb 20, 2025:
- 5:49 PM Ticket #16926 (Crash on Mac waking from sleep) created by
- […]
- 5:18 PM Ticket #16924 (Crash moving window between screens) closed by
- duplicate: This crash is caused by a Qt window toolkit bug on Mac with more than …
- 5:16 PM Ticket #16923 (Many OpenGL errors) closed by
- nonchimerax: Either a remote display problem or OpenGL driver problem.
- 4:54 PM Ticket #16912 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX report a bug panel that you used to submit this bug …
- 3:39 PM Dev2025-2-24 edited by
- (diff)
- 3:35 PM Ticket #16899 (Crash in chem_group on Windows) closed by
- can't reproduce
- 2:33 PM Dev2025-2-24 edited by
- (diff)
- 2:23 PM Dev2025-2-24 edited by
- (diff)
- 2:19 PM Ticket #16925 (Crash in python_instances_of_class) closed by
- duplicate
- 2:15 PM Ticket #16925 (Crash in python_instances_of_class) created by
- […]
- 1:46 PM Ticket #16922 (Graphics driver crash repainting widget) closed by
- can't reproduce
- 1:44 PM Ticket #16921 (Crash in event loop) closed by
- can't reproduce
- 1:38 PM Ticket #16920 (ChimeraX Model Joining) closed by
- not a bug: Forwarded to chimerax-users mailing list where it was answered
- 1:36 PM Ticket #16919 (Crash drawing status bar) closed by
- can't reproduce
- 12:03 PM Ticket #16924 (Crash moving window between screens) created by
- […]
- 11:05 AM Ticket #16923 (Many OpenGL errors) created by
- […]
- 10:59 AM Ticket #16917 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:56 AM Ticket #16915 (Crash opening PDB file) closed by
- can't reproduce
- 10:54 AM Ticket #16914 (Crash in open-file dialog) closed by
- can't reproduce: Hi Kui, Thanks for reporting this problem. It is a problem in the Qt …
- 10:40 AM Ticket #16922 (Graphics driver crash repainting widget) created by
- […]
- 10:37 AM Ticket #16913 (build atom names) closed by
- not a bug: Hi Matt, When you create the initial helium atom, its name is "He". …
- 9:24 AM Ticket #16921 (Crash in event loop) created by
- […]
- 8:31 AM Ticket #16920 (ChimeraX Model Joining) created by
- […]
- 6:39 AM Ticket #16919 (Crash drawing status bar) created by
- […]
- 6:01 AM Ticket #16918 (Bug report segmentations) created by
- […] Screenshot 2025-02-20 at 13.55.46.png …
- 4:03 AM Ticket #16917 (Crash on Mac waking from sleep) created by
- […]
- 3:55 AM Ticket #16916 ('MRCGrid' object has no attribute 'dicom_data') created by
- […]
- 12:32 AM Ticket #16915 (Crash opening PDB file) created by
- […]
Feb 19, 2025:
- 7:46 PM Dev2025-2-24 edited by
- (diff)
- 7:21 PM Ticket #16914 (Crash in open-file dialog) created by
- […]
- 2:50 PM Ticket #16913 (build atom names) created by
- […]
- 11:58 AM Ticket #16906 (Tools gone after running Python script) closed by
- fixed: I'm glad you were able to track down the problem! --Eric
- 11:41 AM Ticket #16912 (Crash on Mac waking from sleep) created by
- […]
- 11:21 AM Ticket #16904 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Graphics driver problem. Ancient ATI Radeon HD 4300/4500 Series from 2008.
- 9:57 AM Ticket #16911 (Intermittent "Permission denied" writing commands history temp file) closed by
- duplicate
- 9:56 AM Ticket #16910 (Intermittent "Permission denied" writing commands history temp file) closed by
- duplicate
- 9:55 AM Ticket #16909 (Intermittent "Permission denied" writing commands history temp file) closed by
- duplicate
- 9:54 AM Ticket #16908 (Intermittent "Permission denied" writing temp commands history file) closed by
- can't reproduce: Anti-virus software interference?
- 9:38 AM Ticket #16907 (Crash opening mmCIF) closed by
- can't reproduce
- 9:31 AM Ticket #16905 (Hang after selection) closed by
- can't reproduce
- 9:25 AM Ticket #16901 (MemoryError opening MD trajectory) closed by
- limitation
- 9:22 AM Ticket #16900 (Crash getting secondary structure ID) closed by
- can't reproduce
- 9:22 AM Ticket #16911 (Intermittent "Permission denied" writing commands history temp file) created by
- […]
- 9:19 AM Ticket #16910 (Intermittent "Permission denied" writing commands history temp file) created by
- […]
- 9:19 AM Ticket #16909 (Intermittent "Permission denied" writing commands history temp file) created by
- […]
- 9:19 AM Ticket #16908 (Intermittent "Permission denied" writing temp commands history file) created by
- […]
- 9:09 AM Ticket #16898 (Crash on Mac waking from sleep) closed by
- duplicate
- 7:52 AM Ticket #16907 (Crash opening mmCIF) created by
- […]
- 7:38 AM Ticket #16906 (Tools gone after running Python script) created by
- […]
- 4:43 AM Ticket #16905 (Hang after selection) created by
- […]
Feb 18, 2025:
- 10:24 PM Ticket #16904 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 10:05 PM Ticket #16903 (Allow homolog chains with different residue numbering to be associated ...) created by
- Willow would like to associate mutation scores with homologous …
- 10:02 PM Ticket #16902 (Allow mutation scores to be associated with multiple chains) closed by
- fixed: Done. The "mutationscores structure" command now takes one or more …
- 9:53 PM Ticket #16902 (Allow mutation scores to be associated with multiple chains) created by
- Willow wants to be able to associate a set of mutation scores with …
- 8:29 PM Ticket #16901 (MemoryError opening MD trajectory) created by
- […]
- 6:58 PM Ticket #16900 (Crash getting secondary structure ID) created by
- […]
- 3:08 PM Ticket #16899 (Crash in chem_group on Windows) created by
- […]
- 2:16 PM Ticket #16898 (Crash on Mac waking from sleep) created by
- […]
- 1:28 PM Ticket #16897 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:23 PM Ticket #16897 (Crash on Mac waking from sleep) created by
- […]
- 1:21 PM Ticket #16896 (Crash in event loop releasing memory) closed by
- can't reproduce
- 1:13 PM Ticket #16895 (defattr re-registration conflict) closed by
- duplicate: Fixed on 4/4/24
- 1:03 PM Ticket #16894 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:01 PM Ticket #16893 (Crash in event loop) closed by
- can't reproduce: Has some similarities to #16881 since both tickets used 1r1a, though …
- 12:01 PM Ticket #16892 (Graphics crash in glBufferSubData, macOS 14.1.1, M1 GPU) closed by
- nonchimerax: Unusual graphics crash in Mac M1 OpenGL driver. Does not appear large …
- 11:55 AM Ticket #16884 (glUniform4fv: invalid operation) closed by
- can't reproduce: OpenGL error drawing selection outline. Windows, Intel graphics, …
- 11:52 AM Ticket #16889 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 11:51 AM Ticket #16888 (Render By Attribute: switching attributes does not preserve marker radius) closed by
- duplicate: Duplicate of #16536
- 11:50 AM Ticket #16885 (Crash on Mac waking from sleep) closed by
- duplicate: When you reported this ChimeraX crash it explained in the Report a Bug …
- 11:48 AM Ticket #16887 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Possible X windows remote display problem.
- 11:44 AM Ticket #16886 (Opening trajectory: not enough memory) closed by
- limitation
- 11:40 AM Ticket #16883 (Crash getting missing-structure pseudobonds while deleting atoms) closed by
- duplicate
- 11:27 AM Ticket #16881 (Crash in event loop) closed by
- can't reproduce: User didn't do much: opened a structure and showed a sequence. Doing …
- 11:21 AM Ticket #16876 (Crash in swap_buffers) closed by
- can't reproduce: Graphics driver crash. Windows Nvidia RTX 3080 with driver version …
- 11:17 AM Ticket #16880 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:11 AM Ticket #16879 (Crash getting missing-structure pseudobonds while deleting atoms) closed by
- can't reproduce
- 11:11 AM Ticket #16875 (Nothing shown in graphics window) closed by
- nonchimerax: You are right that the black screen is because of a problem with your …
- 11:02 AM Ticket #16878 (Crash in chem_group on Windows) closed by
- can't reproduce
- 10:53 AM Ticket #16877 (Crash in chem_group on Windows) closed by
- can't reproduce
- 10:32 AM Ticket #16874 (read_xtc failure; return code 7) closed by
- can't reproduce
- 10:15 AM Dev2025-2-24 created by
- 10:14 AM 2025-2-20 edited by
- (diff)
- 10:14 AM 2025-2-20 created by
- 10:13 AM DeveloperMeetings edited by
- (diff)
- 10:12 AM DeveloperMeetings edited by
- (diff)
- 9:59 AM Ticket #16873 (Crash showing dock widget) closed by
- can't reproduce
- 9:58 AM Ticket #16896 (Crash in event loop releasing memory) created by
- […]
- 9:36 AM Ticket #16871 (Crash on windows opening file or accessing Structure.session) closed by
- duplicate
- 9:32 AM Ticket #16895 (defattr re-registration conflict) created by
- […]
- 9:28 AM Ticket #16870 (Crash on windows opening file or accessing Structure.session) closed by
- can't reproduce: Not sure the stack trace stuff is helping that much on Windows.
- 9:18 AM Ticket #16894 (Crash on Mac waking from sleep) created by
- […]
- 9:14 AM Ticket #16869 (Illegal SDF file) closed by
- not a bug
- 8:58 AM Ticket #16866 (Command history: No space left on device) closed by
- nonchimerax
- 8:49 AM Ticket #16863 (Crash processing mouse click) closed by
- can't reproduce
- 8:37 AM Ticket #16893 (Crash in event loop) created by
- […]
- 8:10 AM Ticket #16892 (Graphics crash in glBufferSubData, macOS 14.1.1, M1 GPU) created by
- […]
- 7:44 AM Ticket #16891 (Possible truncated session file) created by
- […]
- 7:42 AM Ticket #16890 (Possible truncated session file) created by
- […]
- 7:00 AM Ticket #16889 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 6:53 AM Ticket #16888 (Render By Attribute: switching attributes does not preserve marker radius) created by
- […]
- 6:50 AM Ticket #16887 (glDrawBuffer: invalid operation) created by
- […]
- 6:31 AM Ticket #16886 (Opening trajectory: not enough memory) created by
- […]
- 6:30 AM Ticket #16885 (Crash on Mac waking from sleep) created by
- […]
- 2:56 AM Ticket #16884 (glUniform4fv: invalid operation) created by
- […]
- 2:05 AM Ticket #16883 (Crash getting missing-structure pseudobonds while deleting atoms) created by
- […]
- 1:25 AM Ticket #16882 (ArtiaX: self.atoms.displays = mask; Values array length does not match ...) created by
- […]
Feb 17, 2025:
- 3:49 PM Ticket #16881 (Crash in event loop) created by
- […]
- 9:48 AM Ticket #16880 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:27 AM Ticket #16879 (Crash getting missing-structure pseudobonds while deleting atoms) created by
- […]
- 4:09 AM Ticket #16878 (Crash in chem_group on Windows) created by
- […]
- 4:08 AM Ticket #16877 (Crash in chem_group on Windows) created by
- […]
- 3:52 AM Ticket #16876 (Crash in swap_buffers) created by
- […]
Feb 16, 2025:
- 2:16 PM Ticket #16875 (Nothing shown in graphics window) created by
- […]
- 7:12 AM Ticket #16874 (read_xtc failure; return code 7) created by
- […]
Feb 15, 2025:
- 1:33 PM Ticket #16873 (Crash showing dock widget) created by
- […]
- 1:22 PM Ticket #16872 (Opening sessions) created by
- […]
- 5:47 AM Ticket #16871 (Crash on windows opening file or accessing Structure.session) created by
- […]
- 5:47 AM Ticket #16870 (Crash on windows opening file or accessing Structure.session) created by
- […]
Feb 14, 2025:
- 7:53 PM Ticket #16869 (Illegal SDF file) created by
- […]
- 6:12 PM Ticket #16868 (AtomicShapeDrawing selection sometimes inaccurate) created by
- If an AtomicShapeDrawing is added for selected atoms, the shape does …
- 6:04 PM Ticket #16867 (ISOLDE not finding OpenMM 8.0) created by
- […]
- 1:37 PM Ticket #16866 (Command history: No space left on device) created by
- […]
- 12:54 PM Ticket #16865 (Make Acer SpatialLabs View Pro 27" 3D display work with OpenXR) created by
- Krish Raman of Biocryst has glasses-free Acer SpatialLabs View Pro 27" …
- 12:44 PM Ticket #16864 (Improve usability of Sony Spatial Reality 3D display with OpenXR) created by
- Greg Pintilie has two glasses-free 3D flat-panel Sony Spatial Reality …
- 12:39 PM Ticket #16863 (Crash processing mouse click) created by
- […]
- 11:48 AM Dev2025-2-17 edited by
- (diff)
- 11:34 AM Dev2025-2-17 edited by
- (diff)
- 11:26 AM Ticket #16862 (Crash showing/using Selection Inspector) closed by
- can't reproduce
- 11:23 AM Ticket #16861 (MemoryError opening mmCIF file) closed by
- duplicate: Hi Gabriela, Thanks for reporting this problem. It is fixed in more …
- 11:19 AM Ticket #16862 (Crash showing/using Selection Inspector) created by
- […]
- 11:18 AM Ticket #16858 (Crash moving window between screens) closed by
- duplicate
- 11:16 AM Ticket #16860 (Crash drawing scene) closed by
- can't reproduce: Crashed in OpenGL. Possible remote display or graphics driver issue.
- 11:10 AM Ticket #16859 (UniProt ID mapping error) closed by
- nonchimerax: UniProt web service is down for maintenance
- 10:59 AM Ticket #16857 (Crash moving window between screens) closed by
- duplicate
- 10:58 AM Ticket #16856 (Crash after "alphafold predict") closed by
- can't reproduce: On Windows the Python faulthandler output is confusing often showing …
- 10:02 AM Ticket #16861 (MemoryError opening mmCIF file) created by
- […]
- 9:50 AM Ticket #16855 (Crash fetching from Toolshed) closed by
- duplicate
- 8:56 AM Ticket #16860 (Crash drawing scene) created by
- […]
- 1:16 AM Ticket #16859 (UniProt ID mapping error) created by
- […]
- 12:44 AM Ticket #16858 (Crash moving window between screens) created by
- […]
Feb 13, 2025:
- 11:24 PM Ticket #16857 (Crash moving window between screens) created by
- […]
- 7:27 PM Ticket #16856 (Crash after "alphafold predict") created by
- […]
- 5:33 PM Ticket #16855 (Crash fetching from Toolshed) created by
- […]
- 5:24 PM ChangeLog edited by
- (diff)
- 3:15 PM 2025-2-13 edited by
- (diff)
- 3:11 PM Ticket #16849 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') closed by
- duplicate: Hi Fabian, Thanks for reporting this problem. It has been fixed in …
- 3:01 PM Ticket #16854 (Crash on Mac waking from sleep) closed by
- duplicate
- 2:42 PM Ticket #16853 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Dmitrii, Thanks for reporting this problem. It has been fixed in …
- 2:38 PM Ticket #152 (Proportional representation of missing structure) closed by
- fixed: Well, you can label them with their numeric length now. Seems like …
- 1:28 PM Ticket #16851 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:28 PM Ticket #16852 (Crash moving window between screens) closed by
- duplicate
- 1:27 PM Ticket #16850 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:14 PM 2025-2-13 edited by
- (diff)
- 12:13 PM 2025-2-13 edited by
- (diff)
- 9:36 AM Ticket #16847 ('ArrayGridData' object has no attribute 'dicom_data') closed by
- duplicate
- 9:34 AM Ticket #16846 (AddH: More than 2 coplanar positions specified) closed by
- nonchimerax: Bad PDB file
- 8:21 AM Ticket #16854 (Crash on Mac waking from sleep) created by
- […]
- 8:13 AM Ticket #16853 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:55 AM Ticket #16852 (Crash moving window between screens) created by
- […]
- 6:41 AM Ticket #16851 (Crash on Mac waking from sleep) created by
- […]
- 2:21 AM Ticket #16850 (Crash on Mac waking from sleep) created by
- […]
Feb 12, 2025:
- 11:29 PM Ticket #16849 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') created by
- […]
- 6:18 PM Ticket #16848 (Update from numpy 1 to numpy 2.) created by
- This ticket is to track whatever we find about incompatibilities …
- 5:54 PM Ticket #16520 (Ribbon: Array argument has non-numeric values) reopened by
- I actually did reproduce this on Windows.
- 2:56 PM Ticket #16847 ('ArrayGridData' object has no attribute 'dicom_data') created by
- […]
- 2:07 PM Ticket #16843 (Dock Prep: filling out ALA: NoResidueRotamersError) closed by
- fixed: Though I can't reproduce the problem, I believe this fixes it: …
- 12:32 PM Ticket #16842 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:31 PM Ticket #16841 (Crash on exit) closed by
- can't reproduce: Crashed on exit in PyQt in QOpenGLContext::destroy(). PyQt is known …
- 12:28 PM Ticket #16840 (Restore session: MemoryError in grid_data_from_state) closed by
- limitation: As the traceback says, error trying to allocate 325 Mbytes. Machine …
- 12:25 PM Ticket #16839 (Crash moving window between screens) closed by
- duplicate
- 11:50 AM Ticket #16846 (AddH: More than 2 coplanar positions specified) created by
- […]
- 11:21 AM Ticket #16845 (Restore new session in old ChimeraX) closed by
- limitation
- 11:19 AM Ticket #16520 (Ribbon: Array argument has non-numeric values) closed by
- can't reproduce: I went to the AlphaFold website and downloaded that entry's PDB file, …
- 10:09 AM Ticket #16845 (Restore new session in old ChimeraX) created by
- […]
- 9:21 AM Ticket #16844 (Crash on Mac waking from sleep) closed by
- duplicate
- 7:59 AM Ticket #16844 (Crash on Mac waking from sleep) created by
- […]
- 6:29 AM Ticket #16843 (Dock Prep: filling out ALA: NoResidueRotamersError) created by
- […]
- 6:19 AM Ticket #16842 (Crash on Mac waking from sleep) created by
- […]
- 4:33 AM Ticket #16841 (Crash on exit) created by
- […]
- 1:03 AM Ticket #16518 (Session save: '/opt/homebrew/opt/lz4/lib/liblz4.1.dylib' (no such file)) closed by
- fixed: This was caused by using a hand-rolled lz4 wheel before a Mac ARM …
Feb 11, 2025:
- 7:38 PM Ticket #16840 (Restore session: MemoryError in grid_data_from_state) created by
- […]
- 12:54 PM Ticket #16839 (Crash moving window between screens) created by
- […]
- 12:01 PM Dev2025-2-17 created by
- 12:01 PM 2025-2-13 created by
- 11:59 AM DeveloperMeetings edited by
- (diff)
- 11:46 AM Ticket #16836 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:13 AM Ticket #16838 (No space left on device) closed by
- nonchimerax
- 9:09 AM Ticket #16838 (No space left on device) created by
- […]
- 9:02 AM Ticket #16835 (Crash in python_instances_of_class) closed by
- duplicate
- 8:25 AM Ticket #16837 (Crash at startup) created by
- […]
Feb 10, 2025:
- 8:33 PM Ticket #16836 (Crash on Mac waking from sleep) created by
- […]
- 5:47 PM Dev2025-2-10 edited by
- (diff)
- 5:11 PM Ticket #16835 (Crash in python_instances_of_class) created by
- […]
- 4:09 PM Ticket #16834 (ViewDockX tool page in app but not on web site) created by
- […]
- 2:37 PM Ticket #16833 ("devel" help page) created by
- […]
- 2:33 PM Ticket #16831 (Crash moving window between screens) closed by
- duplicate: This crash is due to Qt window toolkit bug on Mac with multiple …
- 1:13 PM Ticket #16832 (Find Cavities crash) closed by
- duplicate
- 1:04 PM Ticket #16832 (Find Cavities crash) created by
- […]
- 12:55 PM Ticket #16831 (Crash moving window between screens) created by
- […]
- 12:15 PM Ticket #16830 (Toolshed not providing uninstalled info) created by
- The toolshed in the daily build is not providing info about …
- 11:30 AM ChangeLog edited by
- (diff)
- 11:18 AM Ticket #16805 (Selection intersection problem) closed by
- can't reproduce: Ok
- 11:06 AM Ticket #16796 (Spin movie button does not work) closed by
- not a bug: Our older program Chimera had an animation tool but that does not …
- 10:54 AM Ticket #16815 (glTexImage2D: Not enough memory) closed by
- nonchimerax: The error means OpenGL graphics ran out of memory. It was just trying …
- 10:46 AM Ticket #16819 (Gaussian cube: could not convert string to float) closed by
- nonchimerax: Bad Gaussian cube file. Gaussian cube format is supposed to have …
- 10:32 AM Ticket #16827 (Graphics crash, macOS 15.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:30 AM Ticket #16829 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:29 AM Ticket #16826 (Crash moving window between screens) closed by
- duplicate
- 10:28 AM Ticket #16825 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:24 AM Ticket #16828 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:08 AM Ticket #16824 (Crash in chem_group) closed by
- can't reproduce
- 10:06 AM Ticket #16823 (Crash in chem_group) closed by
- can't reproduce: Similar to several others (e.g. #16799) but haven't been able to …
- 10:03 AM Ticket #16822 (Crash in python_instances_of_class) closed by
- duplicate
- 10:00 AM Ticket #16821 (Crash on exit) closed by
- can't reproduce
- 10:00 AM Ticket #16829 (Crash on Mac waking from sleep) created by
- […]
- 9:58 AM Ticket #16820 (Crash in event loop) closed by
- can't reproduce
- 9:52 AM Ticket #16818 (Crash in event loop) closed by
- can't reproduce
- 9:51 AM Ticket #16817 (Crash in event loop) closed by
- can't reproduce: Possibly during "toolshed show"
- 9:49 AM Ticket #16816 (Crash during mouse drag) closed by
- can't reproduce
- 9:38 AM Ticket #16828 (Crash on Mac waking from sleep) created by
- […]
- 9:32 AM Ticket #16814 (Crash in event loop) closed by
- can't reproduce
- 9:30 AM Ticket #16813 (Crash in event loop) closed by
- can't reproduce: Possibly as part of "toolshed show"
- 9:29 AM Ticket #16827 (Graphics crash, macOS 15.1, Intel Iris Plus Graphics 655) created by
- […]
- 8:21 AM Ticket #16826 (Crash moving window between screens) created by
- […]
- 7:45 AM Ticket #16825 (Crash on Mac waking from sleep) created by
- […]
Feb 9, 2025:
- 9:40 PM Ticket #16824 (Crash in chem_group) created by
- […]
- 9:39 PM Ticket #16823 (Crash in chem_group) created by
- […]
- 9:05 PM Ticket #16822 (Crash in python_instances_of_class) created by
- […]
- 8:20 PM Ticket #16821 (Crash on exit) created by
- […]
- 2:51 PM Ticket #16820 (Crash in event loop) created by
- […]
- 11:56 AM Ticket #16819 (Gaussian cube: could not convert string to float) created by
- […]
- 9:53 AM Ticket #16818 (Crash in event loop) created by
- […]
- 9:50 AM Ticket #16817 (Crash in event loop) created by
- […]
- 8:51 AM Ticket #16816 (Crash during mouse drag) created by
- […]
Feb 8, 2025:
- 4:33 AM Ticket #16815 (glTexImage2D: Not enough memory) created by
- […]
- 4:06 AM Ticket #16814 (Crash in event loop) created by
- […]
- 3:48 AM Ticket #16813 (Crash in event loop) created by
- […]
Feb 7, 2025:
- 6:43 PM Ticket #16803 (Graphics crash, macOS 13.7.1, M2 GPU) closed by
- nonchimerax: Duplicate of #16802
- 6:43 PM Ticket #16802 (Graphics crash, macOS 13.7.1, M2 GPU) closed by
- nonchimerax: Crash in Apple M2 graphics driver displaying large map.
- 5:05 PM Ticket #16812 (NameError: name 'side' is not defined) closed by
- invalid
- 5:04 PM Ticket #16812 (NameError: name 'side' is not defined) created by
- […]
- 4:40 PM Ticket #16801 ('MRCGrid' object has no attribute 'dicom_data') closed by
- duplicate: Should be fixed in daily builds.
- 4:39 PM Ticket #16459 (Crash importing matplotlib via DICOM) closed by
- fixed: See #16806
- 4:39 PM Ticket #16806 (Problem in matplotlib called from segmentations) closed by
- fixed: Took the matplotlib import out of that file.
- 11:09 AM Ticket #16811 (Crash hiding dock widget) closed by
- can't reproduce
- 10:55 AM Ticket #16811 (Crash hiding dock widget) created by
- […]
- 9:45 AM Ticket #16810 (Crash getting StructureSeq.structure) closed by
- can't reproduce: Possibly fixed by recent changes in atomic (copied Structure seq …
- 9:37 AM Ticket #16809 (Crash in event loop) closed by
- can't reproduce
- 9:33 AM Ticket #16808 (Find Cavities crash) closed by
- duplicate
- 9:32 AM Ticket #16807 (Find Cavities crash) closed by
- duplicate
- 8:58 AM Ticket #16810 (Crash getting StructureSeq.structure) created by
- […]
- 7:56 AM Ticket #16809 (Crash in event loop) created by
- […]
- 6:28 AM Ticket #16808 (Find Cavities crash) created by
- […]
- 6:26 AM Ticket #16807 (Find Cavities crash) created by
- […]
- 5:19 AM Ticket #16806 (Problem in matplotlib called from segmentations) created by
- […]
Feb 6, 2025:
- 5:55 PM Ticket #16805 (Selection intersection problem) created by
- […]
- 3:55 PM Ticket #16799 (Crash in chem_group) closed by
- can't reproduce: Distilled the above into a .cxc file, which worked on Mac and Windows.
- 3:36 PM Ticket #16804 (UniProt feature not shown in daily build) closed by
- fixed: Fix: …
- 3:25 PM Ticket #16793 (Crash in chem_group) closed by
- can't reproduce: Condensed the log into a .cxc file, which worked fine on both Mac and …
- 3:11 PM Ticket #16804 (UniProt feature not shown in daily build) created by
- e.g.: ldlr_human cah1_human
- 10:49 AM Ticket #16800 (Restore new session in old ChimeraX) closed by
- limitation: Hi Alejandro, Thanks for reporting this problem. The "Atomic" bundle …
- 10:42 AM Ticket #16798 (Crash in chem_group while executing script) closed by
- duplicate
- 10:41 AM Ticket #16797 (Crash in chem_group while executing script) closed by
- can't reproduce
- 10:37 AM Ticket #16795 (Crash in chem_group) closed by
- can't reproduce
- 10:33 AM Ticket #16794 (Find Cavities crash) closed by
- duplicate
- 10:31 AM Ticket #16803 (Graphics crash, macOS 13.7.1, M2 GPU) created by
- […]
- 9:42 AM Ticket #16802 (Graphics crash, macOS 13.7.1, M2 GPU) created by
- […]
- 9:12 AM Ticket #16801 ('MRCGrid' object has no attribute 'dicom_data') created by
- […]
- 7:02 AM Ticket #16800 (Restore new session in old ChimeraX) created by
- […]
- 5:56 AM Ticket #16799 (Crash in chem_group) created by
- […]
- 5:07 AM Ticket #16798 (Crash in chem_group while executing script) created by
- […]
- 5:05 AM Ticket #16797 (Crash in chem_group while executing script) created by
- […]
- 5:04 AM Ticket #16796 (Spin movie button does not work) created by
- […]
- 4:42 AM Ticket #16795 (Crash in chem_group) created by
- […]
- 2:17 AM Ticket #16794 (Find Cavities crash) created by
- […]
- 12:58 AM Ticket #16793 (Crash in chem_group) created by
- […]
Feb 5, 2025:
- 7:16 PM Ticket #16792 (Read Boltz-1 .npz PAE files) closed by
- fixed: Done. The AlphaFold Error Plot tool now will find .npz PAE files for …
- 7:09 PM Ticket #16792 (Read Boltz-1 .npz PAE files) created by
- […]
- 6:32 PM Ticket #16791 (Windows Subsystem for Linux crash at startup: malloc corruption) created by
- […] chimerabug.txt
- 5:21 PM Dev2025-2-3 edited by
- (diff)
- 1:56 PM Ticket #16790 (SEQCROW: various errors reading possible ORCA output) created by
- […]
- 12:20 PM Ticket #16789 (Crash in bug reporter while available bundle info being fetched from ...) created by
- […]
- 11:20 AM Ticket #16786 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: The ChimeraX Report a Bug dialog that you used gave the following info …
- 10:04 AM Ticket #16788 (ISOLDE: too many hydrogens for SER) created by
- […]
- 10:04 AM Ticket #16787 (Crash moving window between screens) closed by
- duplicate
- 10:00 AM Ticket #16785 (Crash in python_instances_of_class) closed by
- duplicate
- 9:59 AM Ticket #16784 (Problem installing Clipper) closed by
- not a bug: Hi Jobichen, The version of ISOLDE/Clipper you are trying to install …
- 9:54 AM Ticket #16783 (Session restore: LZ4F_decompress failed) closed by
- duplicate: Duplicate of #16129 (which is still open)
- 9:51 AM Ticket #16782 (Crash opening PDB file) closed by
- can't reproduce
- 5:05 AM Ticket #16787 (Crash moving window between screens) created by
- […]
- 4:29 AM Ticket #16786 (Graphics hardware encountered an error and was reset) created by
- […]
Feb 4, 2025:
- 9:05 PM Ticket #16785 (Crash in python_instances_of_class) created by
- […]
- 8:45 PM Ticket #16784 (Problem installing Clipper) created by
- […]
- 6:36 PM Ticket #16781 (Crash moving window between screens) closed by
- duplicate
- 6:35 PM DeveloperMeetings edited by
- (diff)
- 6:34 PM Ticket #16783 (Session restore: LZ4F_decompress failed) created by
- […]
- 6:34 PM DeveloperMeetings edited by
- (diff)
- 6:33 PM DeveloperMeetings edited by
- (diff)
- 6:32 PM DeveloperMeetings edited by
- (diff)
- 6:32 PM Ticket #16777 (Crash on Mac waking from sleep) closed by
- duplicate
- 6:31 PM Dev2025-2-10 created by
- 6:29 PM 2025-2-6 edited by
- (diff)
- 6:28 PM 2025-2-6 created by
- 6:26 PM DeveloperMeetings edited by
- (diff)
- 6:04 PM Ticket #16769 (Crash on Mac waking from sleep) closed by
- can't reproduce: Appears Qt was doing a window resize. This is not the usual crash …
- 5:58 PM Ticket #16766 (Crash on Mac waking from sleep) closed by
- duplicate: The message in the Report a Bug panel (shown in red) when you reported …
- 5:56 PM Ticket #16782 (Crash opening PDB file) created by
- […]
- 4:18 PM Ticket #8967 (Various TCIA issues) closed by
- fixed: The SEG and CT should be aligned in today's builds.
- 4:08 PM Ticket #9468 (Opening TCIA NM fails) closed by
- fixed: I wish I knew why, but this opens in the daily build.
- 4:03 PM Ticket #9469 (TCIA KO image fails to open) closed by
- fixed: Fixed for the same reason as #9437
- 3:44 PM Ticket #8698 (Some DICOM files only appear using extreme threshold values) closed by
- invalid: Note to self: in the future it would be good to include which specific …
- 3:35 PM Ticket #16580 (Memory leak) closed by
- fixed: Reverted to the older non-trigger/handler version of the code. Fix: …
- 3:31 PM Ticket #9437 (DICOM: bits_allocated is None) closed by
- fixed: Should be fixed in tomorrow's build. Before, the test for whether to …
- 1:29 PM Ticket #16780 (Crash moving window between screens) closed by
- duplicate
- 1:28 PM Ticket #16779 (Crash closing window/tool) closed by
- wontfix: Looking at the log, I'm guessing the user was closing an empty …
- 1:21 PM Ticket #16778 (Crash fetching from Toolshed) closed by
- duplicate
- 1:20 PM Ticket #16758 (Crash initializing PyOpenGL) closed by
- duplicate: Duplicate of #16760
- 1:19 PM Ticket #16776 (Crash in event loop) closed by
- can't reproduce: Either during or right after saving a session.
- 1:18 PM Ticket #16760 (Crash initializing PyOpenGL) closed by
- nonchimerax: The crash happens in line "import OpenGL.GL" importing the PyOpenGL …
- 1:16 PM Ticket #16775 (Crash fetching from Toolshed) closed by
- duplicate
- 1:14 PM Ticket #16774 (ArtiaX: arrays used as indices must be of integer (or boolean) typ) closed by
- duplicate: Old version of ArtiaX
- 7:50 AM Ticket #16781 (Crash moving window between screens) created by
- […]
- 7:03 AM Ticket #16780 (Crash moving window between screens) created by
- […]
- 6:31 AM Ticket #16779 (Crash closing window/tool) created by
- […]
- 12:28 AM Ticket #16778 (Crash fetching from Toolshed) created by
- […]
Feb 3, 2025:
- 6:00 PM Ticket #16777 (Crash on Mac waking from sleep) created by
- […]
- 4:26 PM Ticket #16776 (Crash in event loop) created by
- […]
- 4:02 PM Ticket #16775 (Crash fetching from Toolshed) created by
- […]
- 3:48 PM Ticket #16774 (ArtiaX: arrays used as indices must be of integer (or boolean) typ) created by
- […]
- 2:51 PM Ticket #16773 (ChimeraX bug report submission) created by
- […]
- 2:45 PM Ticket #16335 (Segmentations: KeyError deleting VolumeImage) closed by
- fixed: There's two issues here. One is the out of bounds error when creating …
- 2:16 PM Ticket #15576 (Crash closing lung data) closed by
- fixed: I think it's most likely that this was a crash from closing the …
- 1:35 PM Ticket #16772 (OpenGL on Ubuntu doesn't like the raycasting shader) closed by
- fixed: Fixed in …
- 1:30 PM Ticket #16771 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:18 PM Ticket #16772 (OpenGL on Ubuntu doesn't like the raycasting shader) created by
- […]
- 12:29 PM Ticket #16771 (Crash on Mac waking from sleep) created by
- […]
- 11:12 AM Ticket #16770 (Restore new session in old ChimeraX) closed by
- limitation
- 11:07 AM Ticket #16768 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by
- duplicate
- 11:01 AM Ticket #16767 (Can't save session because NewerVersionQuery not listed) closed by
- duplicate: Hi Jiaxuan, Thanks for reporting this problem. It has been fixed in …
- 10:48 AM Ticket #16765 (Crash fetching from Toolshed) closed by
- duplicate
- 10:46 AM Ticket #16764 (Crash in event loop) closed by
- can't reproduce
- 10:44 AM Ticket #16763 (Crash browsing for folder name) closed by
- can't reproduce
- 10:38 AM Ticket #16762 (Crash moving window between screens) closed by
- duplicate
- 10:37 AM Ticket #16761 (Crash in garbage collection) closed by
- duplicate
- 10:34 AM Ticket #16759 (Non-UTF-8 settings file) closed by
- can't reproduce: Don't know how it got corrupted.
- 10:31 AM Ticket #16757 (Crash running save dialog) closed by
- can't reproduce
- 10:28 AM Ticket #16756 (Crash in py_instance) closed by
- duplicate
- 10:22 AM Ticket #16755 (Crash fetching from Toolshed) closed by
- duplicate: Duplicate of #16707 Again, the user did a ton of work before the …
- 10:03 AM Ticket #16770 (Restore new session in old ChimeraX) created by
- […]
- 9:30 AM Ticket #16769 (Crash on Mac waking from sleep) created by
- […]
- 8:16 AM Ticket #16768 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by
- […]
- 7:59 AM Ticket #16767 (Can't save session because NewerVersionQuery not listed) created by
- […]
- 1:40 AM Ticket #16766 (Crash on Mac waking from sleep) created by
- […]
- 12:49 AM Ticket #16765 (Crash fetching from Toolshed) created by
- […]
Feb 2, 2025:
Feb 1, 2025:
- 11:47 PM Ticket #16763 (Crash browsing for folder name) created by
- […]
- 11:37 PM Ticket #16762 (Crash moving window between screens) created by
- […]
- 7:03 AM Ticket #16761 (Crash in garbage collection) created by
- […]
- 2:37 AM Ticket #16760 (Crash initializing PyOpenGL) created by
- […]
- 2:36 AM Ticket #16759 (Non-UTF-8 settings file) created by
- […]
- 2:11 AM Ticket #16758 (Crash initializing PyOpenGL) created by
- […]
Jan 31, 2025:
- 4:55 PM Ticket #16757 (Crash running save dialog) created by
- […]
- 2:03 PM Ticket #16756 (Crash in py_instance) created by
- […]
- 12:51 PM Ticket #16750 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:06 PM ChangeLog edited by
- (diff)
- 11:58 AM Ticket #16755 (Crash fetching from Toolshed) created by
- […]
- 11:04 AM Ticket #16753 (Crash in QGraphicsView::mouseMoveEvent) closed by
- can't reproduce: Hard to say if its Qt's builtin handling of mouseMoveEvent, or our …
- 10:44 AM Ticket #16754 (Bundle ChimeraX-NMRSTAR has no module) created by
- […]
- 9:56 AM Ticket #16753 (Crash in QGraphicsView::mouseMoveEvent) created by
- […]
- 9:25 AM Ticket #16752 (Crash closing QDockWidget) closed by
- can't reproduce
- 9:19 AM Ticket #16751 (Crash accessing Structure._graphics_changeds) closed by
- can't reproduce
- 9:15 AM Ticket #16749 (Crash saving mmCIF) closed by
- can't reproduce
- 9:12 AM Ticket #16747 (Crash on exit) closed by
- duplicate
- 9:10 AM Ticket #16746 (Crash moving window between screens) closed by
- duplicate
- 7:06 AM Ticket #16752 (Crash closing QDockWidget) created by
- […]
- 5:48 AM Ticket #16751 (Crash accessing Structure._graphics_changeds) created by
- […]
- 4:32 AM Ticket #16750 (Crash on Mac waking from sleep) created by
- […]
- 4:31 AM Ticket #16749 (Crash saving mmCIF) created by
- […]
- 2:28 AM Ticket #16748 (alphafold pae does not accept wild cards for file patterns) created by
- […]
Jan 30, 2025:
- 6:51 PM Ticket #16747 (Crash on exit) created by
- […]
- 5:48 PM Ticket #16746 (Crash moving window between screens) created by
- […]
- 4:24 PM Ticket #16743 (Crash copying StructureSeq) closed by
- fixed: When copying a StructureSeq where .structure is None (i.e. really a …
- 3:58 PM Ticket #16062 (ChimeraX bug report submission) closed by
- fixed: This was fixed for the 1.9 release.
- 3:33 PM Ticket #16744 (Crash copying StructureSeq) closed by
- duplicate: Duplicate of #16743
- 2:54 PM Ticket #16745 (Warning when mmCIF metric table used for an AlphaFold 3 ligand) created by
- […] 8xps_a_zmr_jan30_model.cif
- 1:14 PM Ticket #16524 (Flatpak success/fail message is wrong in nightly emails) closed by
- fixed: The script to determine the build age was reading a variable with a …
- 12:02 PM Ticket #16741 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:51 AM Ticket #16739 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:35 AM Ticket #6824 (No valid OpenGL context on Linux) closed by
- fixed: This was caused by running ChimeraX in a Wayland environment before we …
- 11:24 AM Ticket #16357 (ui view fourup: ZeroDivisionError) closed by
- fixed: You'll no longer get a series of tracebacks if you open plane viewers …
- 10:31 AM Ticket #16740 (Unable to restore session: need to update bundle) closed by
- not a bug: Hi Irina, Thanks for reporting this problem. The message "update …
- 10:15 AM Ticket #16742 (ArtiaX session save: Unknown class name 'MarkerSetPlus') closed by
- duplicate: Fixed as of ArtiaX 0.4.1 (this ticket has 0.3)
- 10:09 AM Ticket #16744 (Crash copying StructureSeq) created by
- […]
- 9:58 AM Ticket #16743 (Crash copying StructureSeq) created by
- […]
- 9:32 AM Ticket #16742 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by
- […]
- 8:15 AM Ticket #16741 (Crash on Mac waking from sleep) created by
- […]
- 8:09 AM Ticket #16740 (Unable to restore session: need to update bundle) created by
- […]
- 12:52 AM Ticket #16739 (Crash on Mac waking from sleep) created by
- […]
Jan 29, 2025:
- 8:03 PM Ticket #16738 (SEQCROW: _read_nbo_coeffs: list index out of range) created by
- […]
- 6:15 PM Ticket #16737 (Crash on Mac waking from sleep) closed by
- duplicate
- 5:56 PM Ticket #16736 (Crash fetching from Toolshed or using save dialog) closed by
- can't reproduce
- 5:48 PM Ticket #16533 (DLL load failed while importing _pyKVFinder: The specified module ...) closed by
- can't reproduce: Maybe something wonky with PYTHONPATH?
- 5:47 PM Ticket #16737 (Crash on Mac waking from sleep) created by
- […]
- 5:47 PM Ticket #16736 (Crash fetching from Toolshed or using save dialog) created by
- […]
- 5:24 PM Ticket #16734 (Foldseek: 'NoneType' object has no attribute 'query_chain') closed by
- duplicate: Fixed a few days ago. User press the Similar Structures panel …
- 5:22 PM Ticket #16735 (Crash fetching from Toolshed) closed by
- duplicate: Again, how was the user able to carry out so many operations if the …
- 5:18 PM Ticket #16733 (Crash fetching from Toolshed) closed by
- duplicate
- 5:16 PM Ticket #16732 (Find Cavities crash) closed by
- duplicate: Duplicate of #16461
- 5:15 PM Ticket #16731 (Restore new session in old ChimeraX) closed by
- limitation
- 4:35 PM Ticket #16721 (Log something when blastprotein finishes) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/b8e236a67c18d6810e2f6fe9e5fad5 …
- 3:35 PM Ticket #16735 (Crash fetching from Toolshed) created by
- […]
- 2:47 PM Ticket #16734 (Foldseek: 'NoneType' object has no attribute 'query_chain') created by
- […]
- 2:43 PM Ticket #16733 (Crash fetching from Toolshed) created by
- […]
- 12:28 PM Ticket #16732 (Find Cavities crash) created by
- […]
- 12:03 PM Ticket #16568 (matchmaker with altlocs shown: No matrix compatible with both ...) closed by
- fixed: Fix: …
- 12:01 PM Ticket #16729 (VIPERdb file: Unknown symmetry group) closed by
- fixed: Fixed in daily build dated Jan 30, 2025 or later. Apparently opening …
- 11:47 AM Ticket #16731 (Restore new session in old ChimeraX) created by
- […]
- 11:33 AM Ticket #16726 (Crash moving window between screens) closed by
- duplicate
- 11:29 AM Ticket #16724 (Graphics crash, macOS 13.7.1, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:28 AM Ticket #16723 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:07 AM Ticket #16730 (Crash moving window between screens) closed by
- duplicate
- 10:04 AM Ticket #16728 (SBGrid install of 1.9 fails to launch; 1.8 works) closed by
- limitation: Please file a bug with sbgrid. We don't control how they install …
- 10:00 AM Ticket #16730 (Crash moving window between screens) created by
- […]
- 9:33 AM Ticket #16725 (Crash in event loop) closed by
- can't reproduce: Some occurrences of "Called accessibilityLabel on invalid object" in …
- 8:29 AM Ticket #16729 (VIPERdb file: Unknown symmetry group) created by
- […]
- 7:57 AM Ticket #16728 (SBGrid install of 1.9 fails to launch; 1.8 works) created by
- […]
- 5:55 AM Ticket #16727 (ArtiaX: various errors) created by
- […]
- 4:05 AM Ticket #16726 (Crash moving window between screens) created by
- […]
- 3:29 AM Ticket #16725 (Crash in event loop) created by
- […]
- 1:23 AM Ticket #16724 (Graphics crash, macOS 13.7.1, Intel Iris Plus Graphics 650) created by
- […]
Jan 28, 2025:
- 11:12 PM Ticket #16723 (Crash on Mac waking from sleep) created by
- […]
- 6:39 PM Ticket #16719 (Shift-"Move atoms" eventually becomes zoom) closed by
- not a bug: If you have any suggestions to improve the handling of the mouse …
- 6:28 PM Ticket #16722 (ISOLDE install errors, wrong version of Clipper) created by
- […]
- 6:19 PM Ticket #16720 (Crash on Mac waking from sleep) closed by
- duplicate
- 6:16 PM Ticket #16721 (Log something when blastprotein finishes) created by
- It looks tricky to do something generically for web service jobs …
- 6:00 PM Ticket #16717 (DiffFit: sim_dir: The system cannot find the path specified) closed by
- duplicate
- 5:56 PM Ticket #16720 (Crash on Mac waking from sleep) created by
- […]
- 5:33 PM Ticket #16719 (Shift-"Move atoms" eventually becomes zoom) created by
- As a followup to #16705: "By the way, there’s an odd bug that shows …
- 5:31 PM Ticket #16705 (Crash getting StructureSeq.structure) closed by
- can't reproduce: Hi Tim, No problem -- I imagine I'll get other reports and maybe I …
- 12:57 PM Ticket #16718 (DiffFit: 'DiffFitTool' object has no attribute 'vol') created by
- […]
- 12:33 PM Ticket #16717 (DiffFit: sim_dir: The system cannot find the path specified) created by
- […]
- 12:04 PM Ticket #16658 ('ArrayGridData' object has no attribute 'dicom_data') closed by
- duplicate: See #16575
- 12:04 PM Ticket #16657 ('MRCGrid' object has no attribute 'dicom_data') closed by
- duplicate: See #16575
- 12:04 PM Ticket #16603 (ArrayGridData' object has no attribute 'dicom_data') closed by
- duplicate: See #16575
- 12:04 PM Ticket #16575 (Orthoplanes: 'MRCGrid' object has no attribute 'dicom_data') closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/2b23b13c4745f3f52d820bef99319d …
- 11:54 AM DeveloperMeetings edited by
- (diff)
- 11:53 AM Dev2025-2-3 created by
- 11:52 AM DeveloperMeetings edited by
- (diff)
- 11:47 AM Ticket #16711 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:47 AM Ticket #16710 (Crash moving window between screens) closed by
- duplicate
- 11:45 AM Ticket #16716 (DiffFit: sim_dir: The system cannot find the path specified) created by
- […]
- 11:43 AM Ticket #16715 (Add species name filter for similar structures and BLAST searches) created by
- Matthias Vorlander asked for limiting BLAST search to a specified …
- 11:30 AM Ticket #16713 (Crash in QDockWidget event handling) closed by
- can't reproduce
- 11:20 AM Ticket #16709 (Crash fetching from Toolshed) closed by
- duplicate
- 11:18 AM Ticket #16708 (Crash fetching from Toolshed) closed by
- duplicate
- 11:08 AM Ticket #16714 (Logging wrong for non-existent subcommands) created by
- For commands with only subcommands, if a non-existent subcommand is …
- 10:13 AM Ticket #16713 (Crash in QDockWidget event handling) created by
- […]
- 9:55 AM Ticket #16706 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:47 AM Ticket #16712 (Copick: 'Session' object has no attribute 'ArtiaX') created by
- […]
- 9:45 AM Ticket #16711 (Crash on Mac waking from sleep) created by
- […]
- 5:52 AM Ticket #16710 (Crash moving window between screens) created by
- […]
Jan 27, 2025:
- 4:59 PM Ticket #16682 (Volume raycasting with orthoplanes: Shader compile failure) closed by
- fixed: I think this is fixed by …
- 4:16 PM Dev2025-1-27 edited by
- (diff)
- 3:02 PM Dev2025-1-27 created by
- 2:29 PM Ticket #16569 (Presets / Initial Styles / Original Look does not change tube helices ...) closed by
- fixed: Okay, "fixed". "Fixed" is in quotes because although the tube helices …
- 2:27 PM Ticket #16698 (Similar Structures: self.results is None) closed by
- fixed: Fixed. Made Ligands and Clusters button show message in error panel …
- 2:21 PM Ticket #16709 (Crash fetching from Toolshed) created by
- […]
- 1:46 PM Ticket #16697 (No Contacts output) closed by
- fixed: Fixed. Fix in the next daily build. Again, thanks for reporting the …
- 1:36 PM Ticket #16708 (Crash fetching from Toolshed) created by
- […]
- 1:28 PM Ticket #16707 (Crash fetching from Toolshed) created by
- […]
- 1:21 PM Ticket #16706 (Crash on Mac waking from sleep) created by
- […]
- 1:14 PM Ticket #16705 (Crash getting StructureSeq.structure) created by
- […]
- 1:05 PM Ticket #16704 (ISOLDE: Unparameterised residue detected) created by
- […]
- 12:59 PM Ticket #16699 (Window moved between screens(?)) closed by
- duplicate: In the ChimeraX Report a Bug panel it showed the following text in red …
- 12:55 PM Ticket #16702 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:54 PM Ticket #16691 (Crash moving window between screens(?)) closed by
- duplicate
- 12:00 PM Ticket #16703 (ISOLDE/OpenMM in 1.10) closed by
- fixed: There are _lot_ of ISOLDE releases. Added the requirement to the 1.9 …
- 11:11 AM Ticket #16701 (Crash opening PDB file) closed by
- can't reproduce
- 11:10 AM Ticket #16700 (Crash opening PDB file) closed by
- can't reproduce
- 11:02 AM Ticket #16696 (Restore new session in old ChimeraX) closed by
- limitation
- 11:01 AM Ticket #16695 (delete all: OSError: exception: access violation) closed by
- duplicate
- 11:00 AM Ticket #16694 (delete all: OSError: exception: access violation) closed by
- duplicate: The later errors indicate that the Python-object-tracking table in the …
- 10:57 AM Ticket #16693 (delete all: OSError: exception: access violation) closed by
- can't reproduce
- 10:51 AM Ticket #16692 (Crash closing main window(?)) closed by
- can't reproduce
- 7:58 AM Ticket #16703 (ISOLDE/OpenMM in 1.10) created by
- […]
- 5:51 AM Ticket #16702 (Crash on Mac waking from sleep) created by
- […]
Jan 26, 2025:
- 9:54 PM Ticket #16701 (Crash opening PDB file) created by
- […]
- 9:47 PM Ticket #16700 (Crash opening PDB file) created by
- […]
- 4:10 PM Ticket #16699 (Window moved between screens(?)) created by
- […]
- 3:19 PM Ticket #16698 (Similar Structures: self.results is None) created by
- […]
- 11:15 AM Ticket #16697 (No Contacts output) created by
- […] Screenshot 2025-01-24 223149.png
- 4:05 AM Ticket #16696 (Restore new session in old ChimeraX) created by
- […]
Jan 25, 2025:
- 8:49 PM Ticket #16695 (delete all: OSError: exception: access violation) created by
- […]
- 8:49 PM Ticket #16694 (delete all: OSError: exception: access violation) created by
- […]
- 8:48 PM Ticket #16693 (delete all: OSError: exception: access violation) created by
- […]
- 7:04 PM Ticket #16692 (Crash closing main window(?)) created by
- […]
Jan 24, 2025:
- 7:35 PM Ticket #16691 (Crash moving window between screens(?)) created by
- […]
- 4:19 PM Ticket #16690 (Should ChimeraX structure prediction focus on Boltz-1, Chai-1, ...) created by
- There is a lot of competition making AlphaFold 3 clones. Boltz-1 from …
- 3:33 PM Ticket #16662 (xr true: A supplied object handle was invalid) closed by
- fixed: Fixed. If OpenXR connection is closed in now gives an clear error …
- 3:29 PM Ticket #16689 (Closing SteamVR app: xr.exception.HandleInvalidError) closed by
- fixed: Fixed. Added code to detect when OpenXR connection is lost and give …
- 12:20 PM Ticket #16689 (Closing SteamVR app: xr.exception.HandleInvalidError) created by
- […]
- 12:02 PM Ticket #16686 (Matrix is None) closed by
- duplicate: This was fixed a month ago in the daily builds right after the …
- 11:55 AM Ticket #16685 (Multiple movies conflict with each other) closed by
- fixed: Fixed. The ChimeraX movie recording command saves the movie images in …
- 11:26 AM Ticket #16683 (QObject::killTimer: Timers cannot be stopped from another thread) closed by
- limitation: The error messages indicate a PyQt object was deleted in a non-gui …
- 11:12 AM Ticket #16688 (QScore: model is None) created by
- […]
- 10:50 AM Ticket #16687 (Crash in event loop) closed by
- can't reproduce
- 10:21 AM Ticket #16687 (Crash in event loop) created by
- […]
- 9:13 AM Ticket #16686 (Matrix is None) created by
- […]
- 6:47 AM Ticket #16685 (Multiple movies conflict with each other) created by
- […]
- 1:30 AM Ticket #16684 (Crash in create_profile) created by
- […]
Jan 23, 2025:
- 9:09 PM Ticket #16683 (QObject::killTimer: Timers cannot be stopped from another thread) created by
- […]
- 7:52 PM Ticket #16682 (Volume raycasting with orthoplanes: Shader compile failure) created by
- […]
- 5:22 PM Ticket #8997 (Skewed DICOM planes skew DICOM 2x2 view too) closed by
- fixed: There's no reason that comes to mind to pay heed to the rotations of …
- 5:00 PM Ticket #16499 (open 3MWP: URL can't contain control characters. 'ssh -D') closed by
- duplicate
- 4:53 PM 2025-1-23 edited by
- (diff)
- 4:30 PM Ticket #16675 (Bug Reporter: crash in opengl_info) closed by
- nonchimerax: User's OpenGL graphics was not functioning for Qt or ChimeraX and gave …
- 4:20 PM Ticket #16681 ("Color outside volume" option on Surface Color panel does nothing) closed by
- fixed: Fixed. The "Color outside volume" option of the Surface Color panel …
- 4:16 PM Ticket #16681 ("Color outside volume" option on Surface Color panel does nothing) created by
- Begin forwarded message: From: "Hansen, Bryan (NIH/NIAID) [E] via …
- 2:50 PM Ticket #15701 (Bounding box breaks regions of interest when raycasting) closed by
- fixed: Same resolution as #15707.
- 2:49 PM Ticket #15707 (Turning on raycasting with an open segmentation results in ...) closed by
- fixed: It turns out that in the VolumeRaycastDrawing's draw method, the …
- 2:11 PM Ticket #16680 (Crash opening mmCIF) closed by
- can't reproduce
- 1:58 PM Ticket #16679 (Crash opening mmCIF) closed by
- can't reproduce: Opening the standard 7usx entry on my Mac does not crash
- 1:53 PM Ticket #16678 (Crash opening mmCIF) closed by
- can't reproduce
- 1:52 PM Ticket #16677 (Crash getting display_radii) closed by
- can't reproduce
- 1:49 PM Ticket #16676 (Crash getting display_radii) closed by
- can't reproduce
- 1:25 PM Ticket #16680 (Crash opening mmCIF) created by
- […]
- 1:17 PM Ticket #16679 (Crash opening mmCIF) created by
- […]
- 1:15 PM Ticket #16678 (Crash opening mmCIF) created by
- […]
- 1:10 PM Ticket #16677 (Crash getting display_radii) created by
- […]
- 1:09 PM Ticket #16676 (Crash getting display_radii) created by
- […]
- 12:51 PM Ticket #16675 (Bug Reporter: crash in opengl_info) created by
- […]
- 10:58 AM R24-slides edited by
- (diff)
- 10:56 AM 2025-1-23 edited by
- (diff)
- 10:55 AM 2025-1-23 edited by
- (diff)
- 10:54 AM 2025-1-23 edited by
- (diff)
- 10:53 AM R24-slides edited by
- (diff)
- 10:53 AM R24-slides edited by
- (diff)
- 10:52 AM R24-slides edited by
- (diff)
- 10:47 AM R24-slides created by
- 10:45 AM Features edited by
- (diff)
- 10:45 AM Features edited by
- (diff)
- 10:37 AM Ticket #16674 (Crash getting secondary structure ID) closed by
- can't reproduce
- 10:29 AM Ticket #16673 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by
- duplicate
- 10:27 AM Ticket #16672 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:25 AM Ticket #16671 (Crash on Windows using file dialog in qtpy) closed by
- can't reproduce
- 8:34 AM Ticket #16674 (Crash getting secondary structure ID) created by
- […]
- 5:58 AM Ticket #16673 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by
- […]
- 12:06 AM Ticket #16672 (Crash on Mac waking from sleep) created by
- […]
Jan 22, 2025:
- 6:42 PM 2025-1-23 edited by
- (diff)
- 2:15 PM GroupMeetings2024 edited by
- (diff)
- 1:15 PM Ticket #16483 (Can't save session with Profile Grid) closed by
- fixed: Profile Grid saves in sessions now (tomorrow's daily build).
- 1:12 PM Ticket #16670 (Crash in event handling during AlphaFold prediction) closed by
- can't reproduce: Maybe the code crashed handling Toolshed update results. It crashed …
- 1:09 PM Ticket #16669 (Graphics crash, macOS 15.1.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 1:07 PM Ticket #16667 (Crash moving window between screens) closed by
- duplicate
- 11:10 AM Ticket #16668 (Dock Prep: wrapped C/C++ object of type ShortASList has been deleted) closed by
- fixed: Fix: …
- 10:27 AM Ticket #16671 (Crash on Windows using file dialog in qtpy) created by
- […]
- 9:30 AM Ticket #16666 (Crash in event loop) closed by
- can't reproduce: Possible remote display
- 7:58 AM Ticket #16670 (Crash in event handling during AlphaFold prediction) created by
- […]
- 6:23 AM Ticket #16669 (Graphics crash, macOS 15.1.1, Intel Iris Plus Graphics) created by
- […]
- 5:31 AM Ticket #16668 (Dock Prep: wrapped C/C++ object of type ShortASList has been deleted) created by
- […]
- 1:06 AM Ticket #16667 (Crash moving window between screens) created by
- […]
Jan 21, 2025:
- 7:05 PM Ticket #16649 (Scalebar: "could not convert string to float" for various values) closed by
- fixed: Fixed. User typed in bad number format in length, x, y, or thickness …
- 6:30 PM Ticket #16666 (Crash in event loop) created by
- […]
- 1:26 PM Ticket #16664 (Crash on Mac waking from sleep) closed by
- duplicate: ChimeraX 1.9 may encounter this crash less often. It is a bug in the …
- 1:24 PM Ticket #16663 (Crash on Mac waking from sleep) closed by
- duplicate: There is a message about this ChimeraX crash in the ChimeraX Report a …
- 11:52 AM Ticket #16665 (SEQCROW: 'Session' object has no attribute 'log') created by
- […]
- 11:40 AM 2025-1-23 created by
- 11:36 AM 2025-1-16 edited by
- (diff)
- 11:36 AM DeveloperMeetings edited by
- (diff)
- 11:16 AM Ticket #16659 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:15 AM Ticket #16656 (glTexImage2D: out of memory while drawing silhouettes /selection outline) closed by
- can't reproduce: Mesa 24.3.0 ran out of memory allocating about 15 Kbytes for a …
- 11:07 AM Ticket #16646 (Crash in swap_buffers) closed by
- nonchimerax: This ChimeraX crash happened in the graphics driver. ChimeraX …
- 11:01 AM Ticket #16645 (Crash in swap_buffers) closed by
- can't reproduce: Crash in OpenGL swap_buffers. Probable graphics driver error. User …
- 10:37 AM Ticket #16664 (Crash on Mac waking from sleep) created by
- […]
- 10:16 AM Ticket #16663 (Crash on Mac waking from sleep) created by
- […]
- 9:36 AM Ticket #16661 (Crash in ~QAccessibleCache on exit) closed by
- can't reproduce
- 9:27 AM Ticket #16655 (Crash in combine_sym_atoms) closed by
- can't reproduce
- 9:26 AM Ticket #4777 (Crash in combine_sym_atoms) closed by
- can't reproduce
- 9:26 AM Ticket #16662 (xr true: A supplied object handle was invalid) created by
- […]
- 9:25 AM Ticket #16653 (Session restore: ItemTable's selectionModel() is None) closed by
- duplicate: Duplicate of #16654
- 9:19 AM Ticket #16652 (Crash moving window between screens) closed by
- duplicate
- 8:55 AM Ticket #16648 (Crash in event loop) closed by
- can't reproduce
- 8:53 AM Ticket #16647 (AlphaFold Error Plot: list index out of range) closed by
- duplicate: Duplicate of #16429
- 8:31 AM Ticket #16642 (Find Cavities crash) closed by
- duplicate
- 6:38 AM Ticket #16661 (Crash in ~QAccessibleCache on exit) created by
- […]
- 6:04 AM Ticket #16660 (toolshed install: Non-existent wheel file) created by
- […]
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