![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#16908 closed defect (can't reproduce)
Intermittent "Permission denied" writing temp commands history file
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Tom Goddard, Greg Couch | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22631
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Select a database from the database table
> open 7df4 fromDatabase pdb format mmcif
Summary of feedback from opening 7df4 fetched from pdb
---
note | Fetching compressed mmCIF 7df4 from http://files.rcsb.org/download/7df4.cif
7df4 title:
SARS-CoV-2 S-ACE2 complex [more info...]
Chain information for 7df4 #1
---
Chain | Description | UniProt
A | Angiotensin-converting enzyme 2 | ACE2_HUMAN 17-615
B C D | Spike glycoprotein | SPIKE_SARS2 1-1208
Non-standard residues in 7df4 #1
---
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)
> select /A
4870 atoms, 5010 bonds, 597 residues, 1 model selected
> lighting simple
[Repeated 2 time(s)]Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 351, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 456, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 182, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 212, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 119, in save
with SaveTextFile(self._filename) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 191, in __init__
SaveFile.__init__(self, filename, open=open_text, critical=critical)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 85, in __init__
self._f = open(self._tmp_filename)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
Error processing trigger "command started":
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
> lighting soft
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 351, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 456, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 182, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 212, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 119, in save
with SaveTextFile(self._filename) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 191, in __init__
SaveFile.__init__(self, filename, open=open_text, critical=critical)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 85, in __init__
self._f = open(self._tmp_filename)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
Error processing trigger "command started":
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
> lighting soft
> lighting full
[Repeated 1 time(s)]
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> show sel atoms
[Repeated 1 time(s)]
> hide sel atoms
> open 6yd7 fromDatabase pdb format mmcif
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 351, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 456, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 182, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 212, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 119, in save
with SaveTextFile(self._filename) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 191, in __init__
SaveFile.__init__(self, filename, open=open_text, critical=critical)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 85, in __init__
self._f = open(self._tmp_filename)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
Error processing trigger "command started":
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Summary of feedback from opening 6yd7 fetched from pdb
---
notes | Fetching compressed mmCIF 6yd7 from http://files.rcsb.org/download/6yd7.cif
Fetching CCD CA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/CA/CA.cif
Fetching CCD NA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/NA/NA.cif
Fetching CCD CL from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/CL/CL.cif
6yd7 title:
X-ray structure of furin in complex with the canavanine-based inhibitor
4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba [more info...]
Chain information for 6yd7 #2
---
Chain | Description | UniProt
A | Furin | FURIN_HUMAN 108-574
B | 4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba |
Non-standard residues in 6yd7 #2
---
00S — 4-(aminomethyl)benzenecarboximidamide
3U0 — 2-[4-(carbamimidamidomethyl)phenyl]ethanoic acid
(2-[4-[(diaminomethylideneamino)methyl]phenyl]acetic acid)
CA — calcium ion
CL — chloride ion
DMS — dimethyl sulfoxide
GGB — L-canavanine (L-2-amino-4-(guanidinooxy)butyric acid)
NA — sodium ion
PO4 — phosphate ion
TBG — 3-methyl-L-valine
119 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open 6yd7 fromDatabase pdb format mmcif
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 351, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 456, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 182, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 212, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 119, in save
with SaveTextFile(self._filename) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 191, in __init__
SaveFile.__init__(self, filename, open=open_text, critical=critical)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 85, in __init__
self._f = open(self._tmp_filename)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
Error processing trigger "command started":
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
6yd7 title:
X-ray structure of furin in complex with the canavanine-based inhibitor
4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba [more info...]
Chain information for 6yd7 #3
---
Chain | Description | UniProt
A | Furin | FURIN_HUMAN 108-574
B | 4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba |
Non-standard residues in 6yd7 #3
---
00S — 4-(aminomethyl)benzenecarboximidamide
3U0 — 2-[4-(carbamimidamidomethyl)phenyl]ethanoic acid
(2-[4-[(diaminomethylideneamino)methyl]phenyl]acetic acid)
CA — calcium ion
CL — chloride ion
DMS — dimethyl sulfoxide
GGB — L-canavanine (L-2-amino-4-(guanidinooxy)butyric acid)
NA — sodium ion
PO4 — phosphate ion
TBG — 3-methyl-L-valine
119 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 280, in text_changed
self.history_dialog._history.replace(unique_cmds)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 208, in replace
self.extend(iterable)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 190, in extend
self.save()
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 212, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\history.py", line 119, in save
with SaveTextFile(self._filename) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 191, in __init__
SaveFile.__init__(self, filename, open=open_text, critical=critical)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 85, in __init__
self._f = open(self._tmp_filename)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\taller.secundaria\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.8008.tmp'
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\safesave.py", line 190, in open_text
return open(filename, 'w', newline=newline, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 32.0.101.5973
OpenGL renderer: Intel(R) UHD Graphics 770
OpenGL vendor: Intel
Python: 3.11.4
Locale: ca_ES.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows
Manufacturer: HP
Model: HP Elite SFF 600 G9 Desktop PC
OS: Microsoft Windows 11 Education (Build 22631)
Memory: 16,833,392,640
MaxProcessMemory: 137,438,953,344
CPU: 20 13th Gen Intel(R) Core(TM) i5-13500
OSLanguage: es-ES
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2024.6.2
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.1
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 24.1
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pywin32: 306
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
WMI: 1.5.1
Change History (2)
comment:1 by , 8 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Input/Output |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Intermittent "Permission denied" writing temp commands history file |
comment:2 by , 8 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
Anti-virus software interference?