![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 10 months ago
Closed 10 months ago
#16652 closed defect (duplicate)
Crash moving window between screens
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.0.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f0947240 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, psutil._psutil_osx, psutil._psutil_posix, chimerax.segment._segment (total: 61)
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{
"uptime" : 49000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac15,6",
"coalitionID" : 824,
"osVersion" : {
"train" : "macOS 15.0.1",
"build" : "24A348",
"releaseType" : "User"
},
"captureTime" : "2025-01-20 15:04:25.3185 +0100",
"codeSigningMonitor" : 1,
"incident" : "BE21D12A-A7FA-4A24-85B1-14124DB9C46A",
"pid" : 715,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-01-17 09:59:49.4685 +0100",
"procStartAbsTime" : 1191752614,
"procExitAbsTime" : 1198590192017,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"98DE0FFC-5840-55AC-BE50-4DB2C0493C29","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "81866301-0A1C-6112-E89F-FE1341120ADC",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "A0A688B5-546B-4B5F-8E10-4BB66F6508B1",
"wakeTime" : 15074,
"sleepWakeUUID" : "24138A37-907A-482E-9882-AD72B586E7E1",
"sip" : "enabled",
"vmRegionInfo" : "0x169 is not in any region. Bytes before following region: 4335500951\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1026a8000-1026ac000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000169","rawCodes":[1,361],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000169"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":715},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"vmregioninfo" : "0x169 is not in any region. Bytes before following region: 4335500951\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1026a8000-1026ac000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
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"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13623525376,
"size" : 245760,
"uuid" : "c7819f04-9645-3279-a9b2-949ff87e6eea",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/segment\/_segment.cpython-311-darwin.so",
"name" : "_segment.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6645633024,
"size" : 241656,
"uuid" : "616eb42e-c350-321e-8002-fb82bd999276",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6645874688,
"size" : 53248,
"uuid" : "d09f4078-adad-3dd0-b17b-ce0142887b28",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6644408320,
"size" : 532476,
"uuid" : "a63f0ef9-59f1-3976-8a7e-2037cd50c605",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6646104064,
"size" : 32740,
"uuid" : "3fac373b-5c41-3c83-8f9f-c9e781e887da",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6708748288,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20795392,
"uuid" : "eb0e3194-641d-38a6-887c-d03042e0e85c",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2566"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6642196480,
"size" : 534116,
"uuid" : "40bedd20-da23-3b70-a9c2-a1c68a738762",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6646333440,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5206016,
"uuid" : "1ad672c1-da68-3367-b947-93ae47652366",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3038.1.403"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6644940800,
"size" : 581628,
"uuid" : "57ffcb9d-a6c9-3e9a-aa82-40f192626527",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 6641385472,
"size" : 4728750080,
"uuid" : "a02dcfba-3bda-3ca6-8a42-12f00a4d75d3"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=57.8G written=24.0M(0%) resident=24.0M(0%) swapped_out=0K(0%) unallocated=57.8G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 528K 29 \nColorSync 672K 31 \nCoreAnimation 2528K 155 \nCoreGraphics 128K 8 \nCoreUI image data 4864K 46 \nFoundation 32K 2 \nKernel Alloc Once 32K 1 \nMALLOC 38.8G 403 \nMALLOC guard page 288K 18 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 832K 52 \nStack 177.8M 53 \nStack Guard 56.0M 1 \nVM_ALLOCATE 16.6G 17217 \nVM_ALLOCATE (reserved) 256.0M 1 reserved VM address space (unallocated)\n__AUTH 3543K 482 \n__AUTH_CONST 52.8M 699 \n__CTF 824 1 \n__DATA 25.8M 844 \n__DATA_CONST 30.1M 861 \n__DATA_DIRTY 2000K 253 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 613.9M 158 \n__OBJC_RW 2353K 1 \n__TEXT 1.0G 878 \n__TPRO_CONST 272K 2 \ndyld private memory 32K 1 \nmapped file 529.7M 71 \nowned unmapped memory 1.9G 1 \npage table in kernel 24.0M 1 \nshared memory 3184K 23 \n=========== ======= ======= \nTOTAL 60.1G 22304 \nTOTAL, minus reserved VM space 59.9G 22304 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "9e9ebca9e4dcecd51111ea976a9f652c5850197e",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "65a8173205d942272410674b",
"factorPackIds" : {
"SIRI_HOME_AUTOMATION_SERVER_FLOW_DEPRECATION" : "65d39fa4cb0e2417d11ce5f6"
},
"deploymentId" : 240000001
},
{
"rolloutId" : "632c763c58740028737bfdd2",
"factorPackIds" : {
"SIRI_DIALOG_ASSETS" : "64a57d23fa6fd41b2353e2ae"
},
"deploymentId" : 240000034
}
],
"experiments" : [
]
}
}
System Profile:
Network Service: USB 10/100/1000 LAN, Ethernet, en6
Network Service: Wi-Fi, AirPort, en0
Thunderbolt Bus: MacBook Pro, Apple Inc.
Thunderbolt Bus: MacBook Pro, Apple Inc.
Thunderbolt Bus: MacBook Pro, Apple Inc.
Boot Volume File System Type: apfs
Memory Module: LPDDR5, Hynix
USB Device: USB31Bus
USB Device: USB31Bus
USB Device: USB3.0 Hub
USB Device: Mass Storage Device
USB Device: USB3.0 Hub
USB Device: USB 10/100/1000 LAN
USB Device: Portable USB 3.0 Drive
USB Device: USB2.0 Hub
USB Device: Dell MS116 USB Optical Mouse
USB Device: USB2.0 Hub
USB Device: USB Billboard Device
USB Device: USB31Bus
Display: Color LCD, 3024 x 1964 Retina, Main, MirrorOff, Online
Display: DELL P2422H, 1920 x 1080 (1080p FHD - Full High Definition), MirrorOff, Online
Display: EA245WMi, 1200 x 1920, MirrorOff, Online
Model: Mac15,6, BootROM 11881.1.1, proc 11:5:6 processors, 18 GB, SMC
Graphics: Apple M3 Pro, Apple M3 Pro, Built-In
AirPort: spairport_wireless_card_type_wifi (0x14E4, 0x4388), wl0: Jul 26 2024 20:29:22 version 23.10.888.0.41.51.162 FWID 01-1d20bb57
IO80211_driverkit-1302.71 "IO80211_driverkit-1302.71" Aug 5 2024 22:09:56
AirPort:
Bluetooth: Version (null), 0 services, 0 devices, 0 incoming serial ports
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 6HWX
6hwx title:
Mature MLV capsid hexamer structure in intact virus particles [more info...]
Chain information for 6hwx #1
---
Chain | Description | UniProt
A B C | Putative gag polyprotein | A0A240FAQ8_9GAMR 1-236
6hwx mmCIF Assemblies
---
1| author_defined_assembly
> sym #1 assembly 1
Made 6 copies for 6hwx assembly 1
> view
> open 6hww
6hww title:
Immature MLV capsid hexamer structure in intact virus particles [more info...]
Chain information for 6hww #3
---
Chain | Description | UniProt
A B C | Putative gag polyprotein | Q9Q9A6_9GAMR 16-236
6hww mmCIF Assemblies
---
1| author_defined_assembly
> sym #3 assembly 1
Made 6 copies for 6hww assembly 1
> view
> close #1#2
> show #3 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open /Users/noah/Desktop/MLV_Capsid_immat_J683_35A_full.pdb
Chain information for MLV_Capsid_immat_J683_35A_full.pdb #1
---
Chain | Description
A AA B BA C CA D DA E EA F FA G GA H HA I IA J JA K KA L LA M MA N NA O OA P PA Q QA R S T V W X Y Z | No description available
> hide #3 models
> hide #!4 models
> view #1 clip false
> hide #1 atoms
> show #1 cartoons
> hbonds #1 reveal true
315 atoms were skipped as donors/acceptors due to missing heavy-atom bond
partners
10114 hydrogen bonds found
> hide #1 cartoons
> show #!1 cartoons
> hide #1 atoms
> style #1 stick
Changed 86940 atom styles
> show #1 atoms
> open 5l93
5l93 title:
An atomic model of HIV-1 CA-SP1 reveals structures regulating assembly and
maturation [more info...]
Chain information for 5l93 #5
---
Chain | Description | UniProt
A B C | Capsid protein p24 | GAG_HV1N5 148-371
5l93 mmCIF Assemblies
---
1| author_and_software_defined_assembly
> sym #5 assembly 1
Made 6 copies for 5l93 assembly 1
> view
> show #1#6.1-6 cartoons
> hide #1#6.1-6 atoms
> mmaker #6.1 to #1/H
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker MLV_Capsid_immat_J683_35A_full.pdb, chain H (#1) with 5l93, chain A
(#6.1), sequence alignment score = 227.4
RMSD between 41 pruned atom pairs is 1.024 angstroms; (across all 198 pairs:
22.011)
> hide #6
> hide #6 ribbons
> show #6.1 ribbons
> hide #1 ribbons
> show #1/H
> show #1#6.1-6 cartoons
> hide #1#6.1-6 atoms
> hide #1 ribbons
> show #1/H ribbons
> color #1/H:184 blue
Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
> select
> #5/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
> #6.1/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
> #6.2/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
> #6.3/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
> #6.4/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
> #6.5/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
> #6.6/A-C:148-161,167-177,180-190,195-216,232-237,242-252,257-277,292-307,310-325,327-336,342-352,355-371
28035 atoms, 28350 bonds, 3486 residues, 7 models selected
> color #6:316 blue
> select add #6
35217 atoms, 35964 bonds, 4530 residues, 8 models selected
> select add #5
36414 atoms, 37233 bonds, 4704 residues, 8 models selected
> select subtract #6
5202 atoms, 5319 bonds, 672 residues, 1 model selected
> select subtract #5
Nothing selected
> show #1#6.1-6 atoms
> hide #1#6.1-6 atoms
Drag select of 77 residues, 5 pseudobonds
> select up
2142 atoms, 2175 bonds, 5 pseudobonds, 266 residues, 3 models selected
> select up
7272 atoms, 7429 bonds, 5 pseudobonds, 923 residues, 3 models selected
> show sel atoms
> hide #2 models
> show #2 models
> hide #2 models
> hide #1 models
> show #1 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> select add #6
33282 atoms, 34024 bonds, 5 pseudobonds, 4283 residues, 9 models selected
> select subtract #6
2070 atoms, 2110 bonds, 5 pseudobonds, 251 residues, 2 models selected
> open /Users/noah/Downloads/cryosparc_P235_J740_012_volume_map_sharp(2).mrc
Opened cryosparc_P235_J740_012_volume_map_sharp(2).mrc as #7, grid size
384,384,384, pixel 1.27, shown at level 0.188, step 2, values float32
> volume #7 step 1
> hide #1 models
> select add #1
86940 atoms, 88620 bonds, 10083 pseudobonds, 10542 residues, 2 models selected
> select add #2
86940 atoms, 88620 bonds, 10114 pseudobonds, 10542 residues, 2 models selected
> select subtract #1
Nothing selected
> ui tool show "Side View"
> volume #7 level 0.1445
> volume #7 level 0.1326
> volume #7 level 0.1167
> open /Users/noah/Downloads/cryosparc_P235_J742_map_locres(1).mrc
Opened cryosparc_P235_J742_map_locres(1).mrc as #8, grid size 384,384,384,
pixel 1.27, shown at level 57.6, step 2, values float32
> ui tool show "Surface Color"
> color sample #7.1 map #8 palette 3,#ff0000:5,#ffffff:7,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.802, mean 8.23, maximum 11.59
> hide #!8 models
> color sample #7.1 map #8 palette 5,#ff0000:7,#ffffff:9,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.648, mean 8.304, maximum 10.73
> color sample #7.1 map #8 palette 5,#ff0000:10,#ffffff:15,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.704, mean 8.496, maximum 24.11
> color sample #7.1 map #8 palette 10,#ff0000:13,#ffffff:16,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.783, mean 8.224, maximum 11.09
> color sample #7.1 map #8 palette 8,#ff0000:12,#ffffff:16,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.787, mean 8.218, maximum 11.14
> color sample #7.1 map #8 palette 8,#ff0000:10,#ffffff:12,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.787, mean 8.218, maximum 11.14
> color sample #7.1 map #8 palette 7,#ff0000:9,#ffffff:11,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.815, mean 8.248, maximum 11.88
> color sample #7.1 map #8 palette 8,#ff0000:9,#ffffff:10,#0000ff
Map values for surface "surface": minimum 3.21, mean 9.782, maximum 60.27
Map values for surface "cap far": minimum 5.815, mean 8.248, maximum 11.88
> color single #7.1
> hide #!7 models
> show #!7 models
> ui tool show "Volume Viewer"
> volume #7 level 0.1485
> volume #7 level 0.1604
> open /Users/noah/Downloads/cryosparc_P235_J744_005_volume_mask_refine.mrc
Opened cryosparc_P235_J744_005_volume_mask_refine.mrc as #9, grid size
384,384,384, pixel 1.27, shown at level 1, step 2, values float32
> volume #9 level 1
> hide #!7 models
> volume #9 step 1
> ui tool show "Segment Map"
Segmenting cryosparc_P235_J744_005_volume_mask_refine.mrc, density threshold
1.000000
Only showing 60 of 73297 regions.
Showing 60 of 73297 region surfaces
7999918 watershed regions, grouped to 73297 regions
Showing cryosparc_P235_J744_005_volume_mask_refine.seg - 73297 regions, 60
surfaces
> hide #!9 models
> hide #!10 models
> show #!9 models
> show #!10 models
> hide #!9 models
Segmenting cryosparc_P235_J744_005_volume_mask_refine.mrc, density threshold
1.000000
Only showing 600 of 73297 regions.
Showing 600 of 73297 region surfaces
7999918 watershed regions, grouped to 73297 regions
Showing cryosparc_P235_J744_005_volume_mask_refine.seg - 73297 regions, 600
surfaces
> open /Users/noah/Downloads/cryosparc_P235_J740_012_volume_map_sharp(3).mrc
Opened cryosparc_P235_J740_012_volume_map_sharp(3).mrc as #11, grid size
384,384,384, pixel 1.27, shown at level 0.188, step 2, values float32
> open /Users/noah/Downloads/cryosparc_P235_J740_012_volume_map_sharp(3).mrc
Opened cryosparc_P235_J740_012_volume_map_sharp(3).mrc as #12, grid size
384,384,384, pixel 1.27, shown at level 0.188, step 2, values float32
> close #12
> hide #!11 models
> hide #!10 models
> show #!11 models
> volume #11 step 1
> volume #11 level 0.1696
> volume #11 level 0.1584
> volume #11 level 0.1397
> open /Users/noah/Downloads/cryosparc_P235_J910_volume_mask_fsc.mrc
Opened cryosparc_P235_J910_volume_mask_fsc.mrc as #12, grid size 384,384,384,
pixel 1.27, shown at level 1, step 2, values float32
> open /Users/noah/Downloads/cryosparc_P235_J910_volume_map_sharp.mrc
Opened cryosparc_P235_J910_volume_map_sharp.mrc as #13, grid size 384,384,384,
pixel 1.27, shown at level 0.232, step 2, values float32
> hide #!11 models
> volume #12 level 1
> hide #!13 models
> volume #12 level 1
> show #!13 models
> hide #!12 models
> volume #13 step 1
> volume #13 level 0.2674
> volume #13 level 0.2244
> open /Users/noah/Downloads/cryosparc_P235_J912_mask.mrc
Opened cryosparc_P235_J912_mask.mrc as #14, grid size 384,384,384, pixel 1.27,
shown at level 1, step 2, values float32
> hide #!13 models
> volume #14 level 1
> volume #14 step 1
> open /Users/noah/Downloads/cryosparc_P235_J913_mask.mrc
Opened cryosparc_P235_J913_mask.mrc as #15, grid size 384,384,384, pixel 1.27,
shown at level 1, step 2, values float32
> open
> /Users/noah/Downloads/cryosparc_P235_J616_class_05_00262_volume_sharp(1).mrc
Opened cryosparc_P235_J616_class_05_00262_volume_sharp(1).mrc as #16, grid
size 128,128,128, pixel 3.8, shown at level 0.962, step 1, values float32
> hide #!14 models
> hide #!15 models
> volume #16 level 0.0858
> volume #16 level 0.7012
> volume #16 level 0.2423
> open /Users/noah/Downloads/cryosparc_P235_J644_class_03_final_volume(1).mrc
Opened cryosparc_P235_J644_class_03_final_volume(1).mrc as #17, grid size
128,128,128, pixel 3.8, shown at level 0.63, step 1, values float32
> hide #!16 models
> volume #17 level 0.759
> volume #17 level 0.7331
> open /Users/noah/Downloads/cryosparc_P235_J715_003_volume_map(1).mrc
Opened cryosparc_P235_J715_003_volume_map(1).mrc as #18, grid size
256,256,256, pixel 1.9, shown at level 0.274, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P235_J715_003_volume_map_sharp(1).mrc
Opened cryosparc_P235_J715_003_volume_map_sharp(1).mrc as #19, grid size
256,256,256, pixel 1.9, shown at level 0.354, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P235_J704_004_volume_map_sharp.mrc
Opened cryosparc_P235_J704_004_volume_map_sharp.mrc as #20, grid size
256,256,256, pixel 1.9, shown at level 0.288, step 1, values float32
> hide #!17 models
> hide #!18 models
> hide #!20 models
> show #!20 models
> hide #!19 models
> show #!18 models
> hide #!20 models
> volume #18 level 0.188
> ui tool show "Side View"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open /Users/noah/Downloads/cryosparc_P235_J916_008_volume_map_sharp.mrc
Opened cryosparc_P235_J916_008_volume_map_sharp.mrc as #21, grid size
384,384,384, pixel 1.27, shown at level 0.189, step 2, values float32
> open /Users/noah/Downloads/cryosparc_P235_J914_005_volume_map_sharp.mrc
Opened cryosparc_P235_J914_005_volume_map_sharp.mrc as #22, grid size
128,128,128, pixel 3.8, shown at level 2.77, step 1, values float32
> hide #!18 models
> hide #!21 models
> volume #22 level 0.1463
> show #!21 models
> hide #!22 models
> volume #21 step 1
> volume #21 level 0.03659
> open
> /Users/noah/Downloads/cryosparc_P235_J616_class_07_00262_volume_sharp(1).mrc
Opened cryosparc_P235_J616_class_07_00262_volume_sharp(1).mrc as #23, grid
size 128,128,128, pixel 3.8, shown at level 0.838, step 1, values float32
> open
> /Users/noah/Downloads/cryosparc_P235_J618_class_03_00242_volume_sharp(1).mrc
Opened cryosparc_P235_J618_class_03_00242_volume_sharp(1).mrc as #24, grid
size 128,128,128, pixel 3.8, shown at level 0.822, step 1, values float32
> open
> /Users/noah/Downloads/cryosparc_P235_J640_class_04_00242_volume_sharp(2).mrc
Opened cryosparc_P235_J640_class_04_00242_volume_sharp(2).mrc as #25, grid
size 128,128,128, pixel 3.8, shown at level 0.804, step 1, values float32
> hide #!21 models
> hide #!24 models
> hide #!25 models
> volume #23 level 0.6494
> show #!24 models
> hide #!23 models
> volume #24 level 0.5858
> show #!25 models
> hide #!24 models
> volume #25 level 0.621
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open
> /Users/noah/Downloads/cryosparc_P235_J652_class_00_00202_volume_sharp.mrc
Opened cryosparc_P235_J652_class_00_00202_volume_sharp.mrc as #26, grid size
128,128,128, pixel 3.8, shown at level 0.834, step 1, values float32
> hide #!25 models
> volume #26 level 0.6183
> view #26 clip false
> ui tool show "Side View"
> volume #24 level 0.576
> hide #!26 models
> volume #24 level 0.5268
> open /Users/noah/Downloads/cryosparc_P235_J700_002_volume_map_sharp.mrc
Opened cryosparc_P235_J700_002_volume_map_sharp.mrc as #27, grid size
128,128,128, pixel 3.8, shown at level 0.784, step 1, values float32
> hide #!24 models
> volume #27 level 0.5005
> hide #!27 models
> show #!25 models
> show #!26 models
> hide #!25 models
> open
> /Users/noah/Downloads/cryosparc_P235_J653_class_07_00162_volume_sharp(1).mrc
Opened cryosparc_P235_J653_class_07_00162_volume_sharp(1).mrc as #28, grid
size 128,128,128, pixel 3.8, shown at level 0.616, step 1, values float32
> hide #!26 models
> volume #28 level 0.3628
> volume #28 level 0.6161
> open /Users/noah/Downloads/cryosparc_P235_J687_003_volume_map_sharp(1).mrc
Opened cryosparc_P235_J687_003_volume_map_sharp(1).mrc as #29, grid size
128,128,128, pixel 3.8, shown at level 0.613, step 1, values float32
> hide #!28 models
> volume #29 level 0.4249
> open
> /Users/noah/Downloads/cryosparc_P235_J654_class_04_00182_volume_sharp.mrc
Opened cryosparc_P235_J654_class_04_00182_volume_sharp.mrc as #30, grid size
128,128,128, pixel 3.8, shown at level 0.791, step 1, values float32
> hide #!29 models
> volume #30 level 0.61
> volume #30 level 0.4422
> volume #30 level 0.5429
> open
> /Users/noah/Downloads/cryosparc_P235_J699_class_02_00142_volume_sharp(1).mrc
Opened cryosparc_P235_J699_class_02_00142_volume_sharp(1).mrc as #31, grid
size 128,128,128, pixel 3.8, shown at level 0.792, step 1, values float32
> hide #!30 models
> volume #31 level 0.5661
> volume #31 level 0.5473
> open /Users/noah/Downloads/cryosparc_P235_J723_006_volume_map_sharp(2).mrc
Opened cryosparc_P235_J723_006_volume_map_sharp(2).mrc as #32, grid size
256,256,256, pixel 1.9, shown at level 0.316, step 1, values float32
> hide #!31 models
> volume #32 level 0.2237
> volume #32 level 0.2059
> open
> /Users/noah/Downloads/cryosparc_P235_J655_class_06_00162_volume_sharp(1).mrc
Opened cryosparc_P235_J655_class_06_00162_volume_sharp(1).mrc as #33, grid
size 128,128,128, pixel 3.8, shown at level 0.67, step 1, values float32
> open
> /Users/noah/Downloads/cryosparc_P235_J655_class_07_00162_volume_sharp(2).mrc
Opened cryosparc_P235_J655_class_07_00162_volume_sharp(2).mrc as #34, grid
size 128,128,128, pixel 3.8, shown at level 0.679, step 1, values float32
> hide #!32 models
> hide #!34 models
> volume #33 level 0.5403
> volume #33 level 0.5013
> volume #33 level 0.4579
> hide #!33 models
> show #!34 models
> volume #34 level 0.5413
> volume #34 level 0.4451
> open
> /Users/noah/Downloads/cryosparc_P235_J656_class_05_00162_volume_sharp(1).mrc
Opened cryosparc_P235_J656_class_05_00162_volume_sharp(1).mrc as #35, grid
size 128,128,128, pixel 3.8, shown at level 0.615, step 1, values float32
> open
> /Users/noah/Downloads/cryosparc_P235_J656_class_05_00162_volume_sharp(1).mrc
Opened cryosparc_P235_J656_class_05_00162_volume_sharp(1).mrc as #36, grid
size 128,128,128, pixel 3.8, shown at level 0.615, step 1, values float32
> hide #!34 models
> hide #!36 models
> volume #35 level 0.4236
> volume #35 level 0.5275
> show #!36 models
> hide #!35 models
> volume #36 level 0.4069
> volume #36 level 0.5067
> volume #36 level 0.4984
> show #!35 models
> hide #!36 models
> volume #35 level 0.4901
> volume #35 level 0.382
> open
> /Users/noah/Downloads/cryosparc_P235_J730_class_01_00182_volume_sharp.mrc
Opened cryosparc_P235_J730_class_01_00182_volume_sharp.mrc as #37, grid size
128,128,128, pixel 3.8, shown at level 0.73, step 1, values float32
> hide #!35 models
> volume #37 level 0.4277
> volume #37 level 0.5162
> volume #37 level 0.511
> open
> /Users/noah/Downloads/cryosparc_P235_J730_class_02_00182_volume_sharp.mrc
Opened cryosparc_P235_J730_class_02_00182_volume_sharp.mrc as #38, grid size
128,128,128, pixel 3.8, shown at level 0.764, step 1, values float32
> hide #!37 models
> volume #38 level 0.5108
> volume #38 level 0.6049
> open /Users/noah/Downloads/cryosparc_P235_J766_006_volume_map_sharp.mrc
Opened cryosparc_P235_J766_006_volume_map_sharp.mrc as #39, grid size
256,256,256, pixel 1.9, shown at level 0.274, step 1, values float32
> hide #!38 models
> volume #39 level 0.1831
> volume #39 level 0.1917
> open
> /Users/noah/Downloads/cryosparc_P235_J918_class_04_00080_volume_sharp.mrc
Opened cryosparc_P235_J918_class_04_00080_volume_sharp.mrc as #40, grid size
128,128,128, pixel 3.8, shown at level 0.761, step 1, values float32
> hide #!39 models
> volume #40 level 0.5597
> volume #40 level 0.4538
> show #!39 models
> hide #!40 models
> volume #39 level 0.1985
> volume #39 level 0.1848
> open
> /Users/noah/Downloads/cryosparc_P235_J917_class_05_00060_volume_sharp.mrc
Opened cryosparc_P235_J917_class_05_00060_volume_sharp.mrc as #41, grid size
180,180,180, pixel 2.7, shown at level 0.505, step 1, values float32
> hide #!39 models
> volume #41 level 0.3942
> volume #41 level 0.3068
> open /Users/noah/Downloads/cryosparc_P235_J921_001_volume_map_sharp.mrc
Opened cryosparc_P235_J921_001_volume_map_sharp.mrc as #42, grid size
128,128,128, pixel 3.8, shown at level 11.3, step 1, values float32
> hide #!41 models
> open /Users/noah/Downloads/cryosparc_P235_J921_005_volume_map_sharp.mrc
Opened cryosparc_P235_J921_005_volume_map_sharp.mrc as #43, grid size
128,128,128, pixel 3.8, shown at level 0.744, step 1, values float32
> hide #!42 models
> volume #43 level 0.488
> open /Users/noah/Downloads/cryosparc_P235_J923_005_volume_map_sharp.mrc
Opened cryosparc_P235_J923_005_volume_map_sharp.mrc as #44, grid size
256,256,256, pixel 1.9, shown at level 0.274, step 1, values float32
> hide #!43 models
> volume #44 level 0.2739
> volume #44 level 0.1585
> volume #44 level 0.2102
> open
> /Users/noah/Downloads/cryosparc_P235_J917_class_05_00100_volume_sharp.mrc
Opened cryosparc_P235_J917_class_05_00100_volume_sharp.mrc as #45, grid size
180,180,180, pixel 2.7, shown at level 0.504, step 1, values float32
> hide #!44 models
> volume #45 level 0.4145
> volume #45 level 0.335
> open
> /Users/noah/Downloads/cryosparc_P235_J918_class_04_00142_volume_sharp.mrc
Opened cryosparc_P235_J918_class_04_00142_volume_sharp.mrc as #46, grid size
128,128,128, pixel 3.8, shown at level 0.77, step 1, values float32
> open
> /Users/noah/Downloads/cryosparc_P235_J918_class_07_00142_volume_sharp.mrc
Opened cryosparc_P235_J918_class_07_00142_volume_sharp.mrc as #47, grid size
128,128,128, pixel 3.8, shown at level 0.819, step 1, values float32
> hide #!45 models
> hide #!47 models
> volume #46 level 0.5902
> volume #46 level 0.4332
> volume #46 level 0.4274
> show #!47 models
> hide #!46 models
> volume #47 level 0.4998
> open /Users/noah/Downloads/cryosparc_P235_J925_005_volume_map_sharp.mrc
Opened cryosparc_P235_J925_005_volume_map_sharp.mrc as #48, grid size
128,128,128, pixel 3.8, shown at level 0.893, step 1, values float32
> hide #!47 models
> volume #48 level 0.753
> volume #48 level 0.6456
> volume #48 level 0.4555
> volume #48 level 0.5299
> open
> /Users/noah/Downloads/cryosparc_P235_J917_class_05_00120_volume_sharp.mrc
Opened cryosparc_P235_J917_class_05_00120_volume_sharp.mrc as #49, grid size
180,180,180, pixel 2.7, shown at level 0.504, step 1, values float32
> hide #!48 models
> volume #49 level 0.3978
> volume #49 level 0.3374
> volume #49 level 0.3424
> open /Users/noah/Downloads/cryosparc_P235_J911_006_volume_map_sharp.mrc
Opened cryosparc_P235_J911_006_volume_map_sharp.mrc as #50, grid size
384,384,384, pixel 1.27, shown at level 0.179, step 2, values float32
> hide #!49 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #50 step 1
> volume #50 level 0.1131
> volume #50 level 0.09594
> open /Users/noah/Downloads/cryosparc_P235_J910_volume_map_sharp(1).mrc
Opened cryosparc_P235_J910_volume_map_sharp(1).mrc as #51, grid size
384,384,384, pixel 1.27, shown at level 0.232, step 2, values float32
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #51 step 1
> hide #!50 models
> volume #51 level 0.1885
> open /Users/noah/Downloads/cryosparc_P235_J910_volume_map.mrc
Opened cryosparc_P235_J910_volume_map.mrc as #52, grid size 384,384,384, pixel
1.27, shown at level 0.187, step 2, values float32
> hide #!51 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #52 step 1
> volume #52 level 0.1212
> volume #52 level 0.1119
> open /Users/noah/Downloads/cryosparc_P235_J911_006_volume_map.mrc
Opened cryosparc_P235_J911_006_volume_map.mrc as #53, grid size 384,384,384,
pixel 1.27, shown at level 0.173, step 2, values float32
> hide #!52 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #53 step 1
> volume #53 level 0.1019
> open /Users/noah/Downloads/cryosparc_P235_J925_005_volume_map_sharp(1).mrc
Opened cryosparc_P235_J925_005_volume_map_sharp(1).mrc as #54, grid size
128,128,128, pixel 3.8, shown at level 0.893, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P235_J925_005_volume_map.mrc
Opened cryosparc_P235_J925_005_volume_map.mrc as #55, grid size 128,128,128,
pixel 3.8, shown at level 0.783, step 1, values float32
> hide #!53 models
> hide #!55 models
> volume #54 level 0.5877
> volume #54 level 0.1499
> show #!55 models
> hide #!54 models
> volume #55 level 0.4875
> volume #55 level 0.4165
> volume #55 level 0.4056
> volume #55 level 0.493
> volume #55 level 0.4657
> hide #!55 models
> show #!52 models
> ui tool show "Segment Map"
> volume gaussian #52 sDev1
Expected a keyword
> volume gaussian #52 sDev 1
Opened cryosparc_P235_J910_volume_map.mrc gaussian as #56, grid size
384,384,384, pixel 1.27, shown at step 1, values float32
> volume gaussian #52 sDev 2
Opened cryosparc_P235_J910_volume_map.mrc gaussian as #57, grid size
384,384,384, pixel 1.27, shown at step 1, values float32
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M3 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,6
Model Number: Z1AU002JQD/A
Chip: Apple M3 Pro
Total Number of Cores: 11 (5 performance and 6 efficiency)
Memory: 18 GB
System Firmware Version: 11881.1.1
OS Loader Version: 11881.1.1
Software:
System Software Overview:
System Version: macOS 15.0.1 (24A348)
Kernel Version: Darwin 24.0.0
Time since boot: 3 days, 5 hours, 8 minutes
Graphics/Displays:
Apple M3 Pro:
Chipset Model: Apple M3 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2422H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
EA245WMi:
Resolution: 1200 x 1920
UI Looks like: 1200 x 1920 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: 90
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 10 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between screens |
comment:2 by , 10 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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