![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 9 months ago
Closed 9 months ago
#16809 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.22631
ChimeraX Version: 1.10.dev202501142332 (2025-01-14 23:32:44 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x80010012
Thread 0x0000f078 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
===== Log before crash start =====
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_10.zip"
Unrecognized file suffix '.zip'
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_wt_as_1cu_1_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_1_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_1_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_1_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_1_model_4.cif"
Chain information for fold_wt_as_1cu_1_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_1_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_1_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_1_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_1_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
447 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> undo
> cartoon hide #4,6
> undo
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_10_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_10_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_10_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_10_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_10_model_4.cif"
Chain information for fold_1as_1cu_10_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_10_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_10_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_10_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_10_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
315 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> undo
> hide #!5 models
> cartoon #1,6
> show #!2 models
> show #!3 models
> show #!4 models
> hide #!4 models
> hide #!3 models
> hide #!2 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> undo
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> undo
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> undo
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_102_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_102_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_102_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_102_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_102_model_4.cif"
Chain information for fold_1as_1cu_102_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_102_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_102_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_102_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_102_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
288 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> undo
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> undo
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_103_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_103_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_103_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_103_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_103_model_4.cif"
Chain information for fold_1as_1cu_103_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_103_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_103_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_103_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_103_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
278 distances
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> show #2 models
> show #4 models
> show #3 models
> show #5 models
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!5 models
> hide #!4 models
> hide #!3 models
> hide #!2 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_wt_as_1cu_104_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_104_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_104_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_104_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_104_model_4.cif"
Chain information for fold_wt_as_1cu_104_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_104_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_104_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_104_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_104_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
352 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_105_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_105_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_105_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_105_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_105_model_4.cif"
Chain information for fold_1as_1cu_105_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_105_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_105_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_105_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_105_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Clashes
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
351 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> undo
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_106_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_106_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_106_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_106_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_106_model_4.cif"
Chain information for fold_1as_1cu_106_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_106_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_106_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_106_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_106_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
312 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_wt_as_1cu_107_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_107_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_107_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_107_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_107_model_4.cif"
Chain information for fold_wt_as_1cu_107_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_107_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_107_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_107_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_107_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
370 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
122 distances
> hide #!2 models
> show #!3 models
> show #!2 models
> show #!1 models
> show #!4 models
> show #!5 models
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
370 distances
> hide #!2 models
> hide #!4 models
> hide #!3 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon #2,6
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_108_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_108_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_108_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_108_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_108_model_4.cif"
Chain information for fold_1as_1cu_108_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_108_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_108_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_108_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_108_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
251 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_wt_as_1cu_109_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_109_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_109_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_109_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_wt_as_1cu_109_model_4.cif"
Chain information for fold_wt_as_1cu_109_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_109_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_109_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_109_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_109_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Clashes
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
221 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis
> Cu/fold_wt_as_1cu_rando_model_0.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_wt_as_1cu_rando_model_1.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_wt_as_1cu_rando_model_2.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_wt_as_1cu_rando_model_3.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_wt_as_1cu_rando_model_4.cif"
Chain information for fold_wt_as_1cu_rando_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_rando_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_rando_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_rando_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1cu_rando_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
278 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando2_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando2_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando2_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando2_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando2_model_4.cif"
Chain information for fold_1as_1cu_rando2_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando2_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando2_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando2_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando2_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
316 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando3_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando3_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando3_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando3_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando3_model_4.cif"
Chain information for fold_1as_1cu_rando3_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando3_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando3_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando3_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando3_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
254 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!4 models
> hide #!5 models
> hide #!3 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando4_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando4_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando4_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando4_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando4_model_4.cif"
Chain information for fold_1as_1cu_rando4_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando4_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando4_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando4_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando4_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
288 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando5_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando5_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando5_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando5_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando5_model_4.cif"
Chain information for fold_1as_1cu_rando5_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando5_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando5_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando5_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando5_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
308 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando6_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando6_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando6_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando6_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando6_model_4.cif"
Chain information for fold_1as_1cu_rando6_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando6_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando6_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando6_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando6_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
377 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando7_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando7_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando7_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando7_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando7_model_4.cif"
Chain information for fold_1as_1cu_rando7_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando7_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando7_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando7_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando7_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
324 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> show #!1 models
> hide #!2 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando8_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando8_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando8_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando8_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando8_model_4.cif"
Chain information for fold_1as_1cu_rando8_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando8_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando8_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando8_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando8_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
263 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!5 models
> hide #!4 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> undo
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> undo
> show #!5 models
> hide #!4 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Cu/fold_1as_1cu_rando9_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando9_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando9_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando9_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Cu/fold_1as_1cu_rando9_model_4.cif"
Chain information for fold_1as_1cu_rando9_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando9_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando9_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando9_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando9_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
457 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis
> Cu/fold_1as_1cu_rando10_model_0.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_1as_1cu_rando10_model_1.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_1as_1cu_rando10_model_2.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_1as_1cu_rando10_model_3.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Cu/fold_1as_1cu_rando10_model_4.cif"
Chain information for fold_1as_1cu_rando10_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando10_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando10_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando10_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1cu_rando10_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 2.9 interModel false ignoreHiddenModels true
261 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_wt_as_1zn_1.zip"
Unrecognized file suffix '.zip'
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_wt_as_1zn_1_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_1_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_1_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_1_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_1_model_4.cif"
Chain information for fold_wt_as_1zn_1_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_1_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_1_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_1_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_1_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
8034 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_102_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_102_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_102_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_102_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_102_model_4.cif"
Chain information for fold_1as_1zn_102_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_102_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_102_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_102_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_102_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6757 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_103_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_103_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_103_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_103_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_103_model_4.cif"
Chain information for fold_1as_1zn_103_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_103_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_103_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_103_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_103_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7241 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> show #!2 models
> hide #!1 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> undo
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_wt_as_1zn_104_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_104_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_104_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_104_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_104_model_4.cif"
Chain information for fold_wt_as_1zn_104_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_104_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_104_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_104_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_104_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6316 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_105_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_105_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_105_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_105_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_105_model_4.cif"
Chain information for fold_1as_1zn_105_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_105_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_105_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_105_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_105_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7447 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_106_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_106_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_106_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_106_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_106_model_4.cif"
Chain information for fold_1as_1zn_106_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_106_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_106_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_106_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_106_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6472 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_wt_as_1zn_107_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_107_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_107_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_107_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_107_model_4.cif"
Chain information for fold_wt_as_1zn_107_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_107_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_107_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_107_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_107_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
5656 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> undo
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_4.cif"
Chain information for fold_wt_as_1zn_109_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
8060 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> undo
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_wt_as_1zn_109_model_4.cif"
Chain information for fold_wt_as_1zn_109_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_109_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
8060 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> undo
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> hide #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis
> Zn/fold_wt_as_1zn_rando_model_0.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_wt_as_1zn_rando_model_1.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_wt_as_1zn_rando_model_2.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_wt_as_1zn_rando_model_3.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_wt_as_1zn_rando_model_4.cif"
Chain information for fold_wt_as_1zn_rando_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_rando_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_rando_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_rando_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_wt_as_1zn_rando_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6754 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> undo
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando2_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando2_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando2_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando2_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando2_model_4.cif"
Chain information for fold_1as_1zn_rando2_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando2_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando2_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando2_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando2_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7228 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> undo
> hide #!4 models
> show #!5 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando3_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando3_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando3_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando3_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando3_model_4.cif"
Chain information for fold_1as_1zn_rando3_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando3_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando3_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando3_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando3_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7663 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> show #!4 models
> hide #!3 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando4_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando4_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando4_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando4_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando4_model_4.cif"
Chain information for fold_1as_1zn_rando4_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando4_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando4_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando4_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando4_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6028 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando5_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando5_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando5_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando5_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando5_model_4.cif"
Chain information for fold_1as_1zn_rando5_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando5_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando5_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando5_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando5_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
5796 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> show #!3 models
> hide #!2 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> show #!3 models
> show #!2 models
> hide #!3 models
> hide #!4 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando6_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando6_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando6_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando6_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando6_model_4.cif"
Chain information for fold_1as_1zn_rando6_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando6_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando6_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando6_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando6_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7232 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> undo
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!4 models
> show #!5 models
> hide #!4 models
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando7_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando7_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando7_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando7_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando7_model_4.cif"
Chain information for fold_1as_1zn_rando7_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando7_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando7_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando7_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando7_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7049 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando8_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando8_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando8_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando8_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando8_model_4.cif"
Chain information for fold_1as_1zn_rando8_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando8_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando8_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando8_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando8_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
7335 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> undo
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_rando9_model_0.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando9_model_1.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando9_model_2.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando9_model_3.cif"
> "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab Data/SAHIL-
> MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold benchmarking
> 1.0/Large data set analysis Zn/fold_1as_1zn_rando9_model_4.cif"
Chain information for fold_1as_1zn_rando9_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando9_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando9_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando9_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando9_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6483 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> undo
> hide #!1 models
> show #!2 models
> cartoon hide #2,6
> undo
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> close session
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis
> Zn/fold_1as_1zn_rando10_model_0.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_1as_1zn_rando10_model_1.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_1as_1zn_rando10_model_2.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_1as_1zn_rando10_model_3.cif" "C:/Users/chins/OneDrive - McMaster
> University/3-2/Melacini Lab Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab
> Research File/AlphaFold benchmarking 1.0/Large data set analysis
> Zn/fold_1as_1zn_rando10_model_4.cif"
Chain information for fold_1as_1zn_rando10_model_0.cif #1
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando10_model_1.cif #2
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando10_model_2.cif #3
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando10_model_3.cif #4
---
Chain | Description
A | .
Chain information for fold_1as_1zn_rando10_model_4.cif #5
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
6009 distances
> label #1-6 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> cartoon hide #1,6
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> cartoon hide #3,6
> hide #!3 models
> show #!4 models
> cartoon hide #4,6
> undo
> hide #!4 models
> show #!5 models
> cartoon hide #5-6
> open "C:/Users/chins/OneDrive - McMaster University/3-2/Melacini Lab
> Data/SAHIL-MELACINI LAB 3RP3 DATA/Melacini Lab Research File/AlphaFold
> benchmarking 1.0/Large data set analysis Zn/fold_1as_1zn_102_model_4.cif"
Chain information for fold_1as_1zn_102_model_4.cif #7
---
Chain | Description
A | .
Computing secondary structure
> ui tool show Contacts
> contacts distanceOnly 4.2 interModel false ignoreHiddenModels true
3512 distances
> cartoon hide #5-7
> label #5-7 text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
===== Log before crash end =====
Log:
Startup Messages
---
warning | Your computer has Intel graphics driver 7324 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this.
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.10.dev202501142332 (2025-01-14)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 26.20.100.7324
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel
Python: 3.11.4
Locale: en_CA.cp949
Qt version: PyQt6 6.8.0, Qt 6.8.1
Qt runtime version: 6.8.1
Qt platform: windows
Manufacturer: SAMSUNG ELECTRONICS CO., LTD.
Model: 930XBE
OS: Microsoft Windows 11 Home (Build 22631)
Memory: 8,476,635,136
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-8265U CPU @ 1.60GHz
OSLanguage: ko-KR
Installed Packages:
alabaster: 1.0.0
anyio: 4.8.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.2.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.12.14
cftime: 1.6.4.post1
charset-normalizer: 3.4.1
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.dev202501142332
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.5.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.7
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-ProfileGrids: 1.0.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.15
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.43
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
coverage: 7.6.10
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.11
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.0.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.5
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.8
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
pluggy: 1.5.0
prompt_toolkit: 3.0.48
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.1
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.0
PyQt6-Qt6: 6.8.1
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.1
PyQt6_sip: 13.9.1
pytest: 8.3.4
pytest-cov: 6.0.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pywin32: 306
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.3.0
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (2)
comment:1 by , 9 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 9 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
