ArtiaX: arrays used as indices must be of integer (or boolean) typ

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-14.6-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
Opened HIV_Nuc_wt_grid10_87002_rec.mrc as #1.1.1, grid size 684,684,200, pixel
11.4,11.4,11.4, shown at level 173, step 2, values float32  

> artiax clip off

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.1 region 0,0,98,683,683,98 step 1 colorMode auto8 showOutlineBox
> true imageMode "full region"

> volume #1.1.1 level 9.37,0 level 173.7,0.7381 level 290.1,1

> volume #1.1.1 level 86.69,0 level 173.7,0.7381 level 290.1,1

> volume #1.1.1 level 86.69,0 level 171,0.9073 level 290.1,1

> close #1.1.1

> open
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/original_tomograms/HIV_Nuc_wt_grid10_87002_rec.mrc

Opened HIV_Nuc_wt_grid10_87002_rec.mrc as #2, grid size 684,684,200, pixel
11.4,11.4,11.4, shown at level 173, step 2, values float32  

> volume #2 style image region 0,0,98,683,683,98 step 1 showOutlineBox true

> volume #2 level 133.4,0 level 175.4,0.8 level 201.3,1

> volume #2 level 87.66,0 level 175.4,0.8 level 201.3,1

> volume #2 level 87.66,0 level 169.9,0.9538 level 201.3,1

> open /Users/zhenhou/Desktop/cone_full.em format motl

> artiax clip off

Opened Particle list cone_full.em with 235 particles.  

> artiax particles #1.2.1 originScaleFactor 8.0

> artiax view xy

> ui mousemode right select

Drag select of axes, 235 atoms  

> open /Users/zhenhou/Desktop/CA_outside.mrc

Opened CA_outside.mrc as #3, grid size 96,96,96, pixel 3.8, shown at level
4.73, step 1, values float32  

> artiax attach #3 toParticleList #1.2.1

Opened CA_outside.mrc as #1.2.1.1.1, grid size 96,96,96, pixel 3.8, shown at
level 4.73, step 1, values float32  

> volume #1.2.1.1.1 capFaces false

> artiax show #1.2.1 surfaces

> artiax hide axes

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> artiax particles #1.2.1 color 94,64,100,100

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "rotate selected particles"

> hide #!1.2.1 models

> view orient

> show #!1.2.1 models

> ui mousemode right "translate selected particles"

> ui tool show "Side View"

> view orient

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "rotate selected particles"

> view orient

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "translate selected particles"

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> view orient

> show #!1.2.1 models

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/passage_cone.em
> partlist #1.2.1

> open /Users/zhenhou/Desktop/cone_full.em format motl

> artiax clip off

Opened Particle list cone_full.em with 235 particles.  

> artiax particles #1.2.2 originScaleFactor 8.0

> artiax view xy

> hide #!1.2.1 models

> artiax hide axes

> open /Users/zhenhou/Desktop/CA_outside.mrc

Opened CA_outside.mrc as #3, grid size 96,96,96, pixel 3.8, shown at level
4.73, step 1, values float32  

> artiax attach #3 toParticleList #1.2.2

Opened CA_outside.mrc as #1.2.2.1.1, grid size 96,96,96, pixel 3.8, shown at
level 4.73, step 1, values float32  

> volume #1.2.2.1.1 capFaces false

> artiax show #1.2.2 surfaces

> ui mousemode right select

Drag select of surfaces, 235 atoms  

> ui mousemode right "rotate selected particles"

> artiax particles #1.2.2 originScaleFactor 7.0

> artiax view xy

> ui mousemode right "translate selected particles"

> view orient

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> ui mousemode right "rotate selected particles"

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> ui mousemode right "translate selected particles"

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.2 models

> show #!1.2.2 models

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/docking_cone.em
> partlist #1.2.2

> hide #!1.2.2 models

> open /Users/zhenhou/Desktop/tube_full.em format motl

> artiax clip off

Opened Particle list tube_full.em with 181 particles.  

> artiax particles #1.2.3 originScaleFactor 8.0

> artiax view xy

> open /Users/zhenhou/Desktop/CA_outside.mrc

Opened CA_outside.mrc as #3, grid size 96,96,96, pixel 3.8, shown at level
4.73, step 1, values float32  

> artiax attach #3 toParticleList #1.2.3

Opened CA_outside.mrc as #1.2.3.1.1, grid size 96,96,96, pixel 3.8, shown at
level 4.73, step 1, values float32  

> volume #1.2.3.1.1 capFaces false

> artiax show #1.2.3 surfaces

> artiax hide axes

> ui mousemode right select

Drag select of surfaces, 181 atoms  

> ui mousemode right "translate selected particles"

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> view orient

> hide #!1.2.3 models

> show #!1.2.3 models

> artiax show markers

> artiax hide surfaces

> artiax particles #1.2.3 radius 8.4608365

> view orient

> artiax show markers

> artiax hide markers

> artiax show surfaces

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> view orient

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> view orient

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/imported_tube.em
> partlist #1.2.3

> artiax clip off

> hide #!1.2.3 models

> ui mousemode right "mark plane"

> marker #1.2.4.3 position 3239,2953,216.9 color #4c005c radius 11.42

> artiax particles #1.2.4 radius 86.7486692

> view orient

> marker #1.2.4.3 position 5762,4470,605 color #4c005c radius 11.42

> marker #1.2.4.3 position 4424,3354,-627.9 color #4c005c radius 11.42

> open /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/npc.mrc

Opened npc.mrc as #3, grid size 144,144,144, pixel 13.8, shown at level 0.294,
step 1, values float32  

> artiax attach #3 toParticleList #1.2.4

Opened npc.mrc as #1.2.4.1.1, grid size 144,144,144, pixel 13.8, shown at
level 0.294, step 1, values float32  

> volume #1.2.4.1.1 capFaces false

> artiax show #1.2.4 surfaces

> ui mousemode right "translate selected particles"

> ui mousemode right select

> select #1.2.4.3/M:1@M

1 atom, 1 residue, 1 model selected  

> ui mousemode right "rotate selected particles"

> ui mousemode right select

> select #1.2.4.3/M:2@M

1 atom, 1 residue, 1 model selected  

> ui mousemode right "rotate selected particles"

> ui mousemode right select

> select #1.2.4.3/M:3@M

1 atom, 1 residue, 1 model selected  

> ui mousemode right "rotate selected particles"

> view orient

> save /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/npc.em
> partlist #1.2.4

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/segmentaion.cxs

> view orient

> artiax hide markers

> open
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/HIV_Nuc_wt_grid10_87002_rec_membranes.mrc
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/HIV_Nuc_wt_grid10_87002_rec_NE.mrc

Opened HIV_Nuc_wt_grid10_87002_rec_membranes.mrc as #3.1, grid size
684,684,200, pixel 11.4,11.4,11.4, shown at level 1, step 2, values int8  
Opened HIV_Nuc_wt_grid10_87002_rec_NE.mrc as #3.2, grid size 684,684,200,
pixel 11.4,11.4,11.4, shown at level 2, step 2, values int8  

> volume #3.1 step 1

> volume #3.2 step 1

> volume #3.1 level 0.5116

> volume #3.2 level 1.481

> view orient

> show #!1.2.1 models

> show #!1.2.2 models

> show #!1.2.3 models

> view orient

> ui mousemode right select

> select #3.2

2 models selected  

> select #3.1

2 models selected  

> select #3.2

2 models selected  

> ui mousemode right "translate selected particles"

Opened HIV_Nuc_wt_grid10_87002_rec.mrc as #1.1.1, grid size 684,684,200, pixel
11.4,11.4,11.4, shown at level 173, step 2, values float32  

> artiax clip off

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 slice 89

> artiax tomo #1.1.1 slice 107

> volume #2

> volume #2 level 87.66,0 level 168.5,0.8615 level 201.3,1

> volume #2 level 92.85,0 level 168.5,0.8615 level 201.3,1

> volume #2 level 92.85,0 level 169.9,0.8462 level 201.3,1

> hide #!1.2.4 models

> hide #!1.2.2 models

> hide #!1.2.3 models

> ui mousemode right select

Drag select of surfaces  

> ui mousemode right "translate selected particles"

> view orient

[Repeated 1 time(s)]

> ui mousemode right "rotate selected particles"

> view orient

> ui mousemode right "translate selected particles"

> ui mousemode right "translate picked particle"

> ui mousemode right "rotate selected particles"

> view orient

> ui mousemode right "translate selected particles"

> view orient

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> view orient

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "rotate selected particles"

> hide #!1.2.1 models

> show #!1.2.1 models

> artiax particles #1.2.1 originScaleFactor 7.0

> artiax view xy

> ui mousemode right "translate selected particles"

[Repeated 1 time(s)]

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> ui mousemode right "rotate selected particles"

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/passage_cone.em
> partlist #1.2.1

> hide #!1.2.1 models

> show #!1.2.2 models

> ui mousemode right select

Drag select of surfaces  

> ui mousemode right "translate selected particles"

> view orient

> ui mousemode right "rotate selected particles"

> view orient

[Repeated 2 time(s)]

> hide #!1.2.2 models

> show #!1.2.2 models

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/docking_cone.em
> partlist #1.2.2

> hide #!1.2.2 models

> show #!1.2.3 models

> ui mousemode right "translate selected particles"

> ui mousemode right select

Drag select of surfaces  

> view orient

> select clear

Drag select of surfaces, 171 of 181 instances  
Drag select of surfaces  

> ui mousemode right "translate selected particles"

> view orient

> hide #!1.2.3 models

> show #!1.2.3 models

> view orient

> hide #!1.2.3 models

> show #!1.2.3 models

> view orient

> ui mousemode right "rotate selected particles"

> view orient

[Repeated 2 time(s)]

> ui mousemode right "translate selected particles"

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> ui mousemode right "rotate selected particles"

> hide #!1.2.3 models

> show #!1.2.3 models

> hide #!1.2.3 models

> artiax particles #1.2.3 originScaleFactor 7.0

> artiax view xy

> show #!1.2.3 models

> ui mousemode right "translate selected particles"

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> hide #!1.2.3 models

> show #!1.2.3 models

> hide #!1.2.3 models

> show #!1.2.3 models

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/imported_tube.em
> partlist #1.2.3

> show #!1.2.4 models

> hide #!1.2.3 models

> view orient

> artiax show markers

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 352, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/geometry/place.py", line 739, in masked  
p = Places(place_array=self.array()[mask])  
~~~~~~~~~~~~^^^^^^  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 181  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 181  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/geometry/place.py", line 739, in masked  
p = Places(place_array=self.array()[mask])  
~~~~~~~~~~~~^^^^^^  
  
See log for complete Python traceback.  
  

> ui mousemode right select

> select #1.2.4.2

1 model selected  

> select #1.2.4.3/M:1@M

1 atom, 1 residue, 1 model selected  

> select #1.2.4.3/M:2@M

1 atom, 1 residue, 1 model selected  

> select #1.2.4.3/M:3@M

1 atom, 1 residue, 1 model selected  

> view orient

> show #!1.2.3 models

> show #!1.2.2 models

> show #!1.2.1 models

> hide #!1.2.3 models

> hide #!1.2.2 models

> hide #!1.2.1 models

> ui mousemode right "mark plane"

> marker #1.2.4.3 position 3238,2899,1301 color #4c005c radius 86.75

> ui mousemode right "rotate selected particles"

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.2.1 models

> hide #!1.2.1 models

> ui mousemode right "mark plane"

> marker #1.2.4.3 position 5776,4439,1826 color #4c005c radius 86.75

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> ui mousemode right "mark plane"

> marker #1.2.4.3 position 4337,3230,262.6 color #4c005c radius 86.75

> ui mousemode right "rotate selected particles"

> ui mousemode right select

> select #1.2.4.3/M:1@M

1 atom, 1 residue, 1 model selected  

> ui mousemode right "rotate selected particles"

> ui mousemode right "translate selected particles"

> view orient

> artiax hide markers

> save /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/npc.em
> partlist #1.2.4

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/segmentaion.cxs

> view orient

> artiax particles #1.2.4 surfaceLevel 0.0267935

> artiax particles #1.2.4 color 30,0,36,100

> artiax particles #1.2.4 color 92,92,92,100

> volume #3.2 color #797979

> volume #3.1 color #424242

> ui mousemode right select

> select clear

> view orient

> show #!1.2.1 models

> show #!1.2.2 models

> show #!1.2.3 models

> view orient

> volume #3.1 #3.2 surfaceSmoothing true

> volume #3.1 #3.2 smoothingIterations 10

> volume #3.1 #3.2 smoothingFactor 0.5

> volume #3.2 level 1.198

> volume #3.2 level 0.348

> view orient

> artiax particles #1.2.4 color 45,4,100,100

[Repeated 1 time(s)]

> artiax particles #1.2.4 color 84,84,84,100

> artiax particles #1.2.1 color 94,64,100,100

> artiax particles #1.2.1 color 30,0,36,100

> artiax particles #1.2.2 color 30,0,36,100

> artiax particles #1.2.3 color 30,0,36,100

> lighting soft

> view orient

> artiax hide axes

[Repeated 1 time(s)]

> view orient

> artiax particles #1.2.4 surfaceLevel 0.07060145

> artiax particles #1.2.4 surfaceLevel 0.03931005

> lighting simple

> artiax particles #1.2.4 surfaceLevel 0.06434317

> hide #!1.2.4 models

> hide #!1.2.3 models

> hide #!1.2.2 models

> hide #!1.2.1 models

> ui tool show "Map Eraser"

> volume erase #3.2 center 5674.7,4510.5,1744.6 radius 260.03

Opened HIV_Nuc_wt_grid10_87002_rec_NE.mrc copy as #5, grid size 684,684,200,
pixel 11.4,11.4,11.4, shown at step 1, values int8  

> volume erase #5 center 5762.8,4558.6,1767.4 radius 257.67

> volume erase #5 center 5816.9,4562.4,1740.2 radius 257.67

> volume erase #5 center 5763,4533.5,1731 radius 257.67

> show #!1.2.4 models

> hide #!1.2.4 models

> volume erase #5 center 5717.1,4483.7,1686.8 radius 257.67

> show #!1.2.4 models

> hide #!1.2.4 models

> volume erase #5 center 5582.3,4453,1723.6 radius 257.67

> volume erase #5 center 5529.9,4454.9,1836.1 radius 257.67

> show #!1.2.4 models

> show #!1.2.3 models

> show #!1.2.2 models

> show #!1.2.1 models

> close #3.2

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/HIV_Nuc_wt_grid10_87002_rec_NE.mrc
> models #5

> view orient

> lighting soft

> volume #5 color #424242

> volume #3.1 color silver

> volume #3.1 color darkgrey

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/segmentaion.cxs

> view orient

> lighting simple

> hide #!1.2.1 models

> hide #!1.2.2 models

> hide #!1.2.3 models

> hide #!1.2.4 models

> show #!1.2.1 models

> hide #!1.2.1 models

> open
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/HIV_Nuc_wt_grid10_87002_1_bin6_display.em
> format motl

> artiax clip off

Opened Particle list HIV_Nuc_wt_grid10_87002_1_bin6_display.em with 2831
particles.  

> artiax particles #1.2.5 originScaleFactor 11.45

> artiax view xy

> artiax particles #1.2.5 originScaleFactor 11.4156

> artiax view xy

> artiax particles #1.2.5 originScaleFactor 11.4156

> artiax view xy

> artiax hide markers

> artiax hide axes

> open /Users/zhenhou/Desktop/projects/2023/Nucleosome/STA
> structure/run_class001.mrc

Opened run_class001.mrc as #4, grid size 128,128,128, pixel 4.36, shown at
level 0.04, step 1, values float32  

> artiax attach #4 toParticleList #1.2.5

Opened run_class001.mrc as #1.2.5.1.1, grid size 128,128,128, pixel 4.36,
shown at level 0.04, step 1, values float32  

> volume #1.2.5.1.1 capFaces false

> artiax show #1.2.5 surfaces

> artiax particles #1.2.5 surfaceLevel 0.12584004

> artiax particles #1.2.5 color 100,80,60,100

> show #!1.2.1 models

> show #!1.2.2 models

> show #!1.2.4 models

> show #!1.2.3 models

> artiax show markers

> ui mousemode right select

> select #1.2.5.3/M:2477@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2389@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2231@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2465@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2244@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2509@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2447@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2365@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2516@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2374@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2494@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2568@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2514@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2464@M

1 atom, 1 residue, 1 model selected  

> view orient

> select #1.2.5.3/M:2238@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:1492@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:983@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2113@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2322@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2096@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2340@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2269@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2126@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2589@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2797@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2787@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2734@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2733@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2747@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2740@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.2

1 model selected  

> artiax particles #1.2.5 radius 58.62585551

> select #1.2.5.3/M:2731@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2796@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2714@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2784@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2810@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2793@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.2

1 model selected  

> select #1.2.5.3/M:2745@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2811@M

1 atom, 1 residue, 1 model selected  

> select #1.2.5.3/M:2670@M

1 atom, 1 residue, 1 model selected  

> view orient

> artiax hide markers

> view orient

> lighting soft

> set bgColor white

> set bgColor #ffffff00

> view orient

[Repeated 1 time(s)]

> volume #3.1 level 2.127

> lighting simple

> volume #3.1 level 0.3158

> volume #3.1 level 0.6095

> view orient

> lighting soft

> lighting simple

> hide #!1.2.3 models

> hide #!1.2.5 models

> hide #!1.2.4 models

> hide #!1.2.1 models

> hide #!1.2.2 models

> ui tool show "Map Eraser"

> volume erase #3.1 center 5273.3,2367.9,1030.6 radius 115.68

Opened HIV_Nuc_wt_grid10_87002_rec_membranes.mrc copy as #6, grid size
684,684,200, pixel 11.4,11.4,11.4, shown at step 1, values int8  

> volume erase #6 center 6186.8,3027.1,1894.9 radius 121.03

> volume erase #6 center 6123.5,2991.1,1858.8 radius 121.03

> view orient

> close #3.1

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/HIV_Nuc_wt_grid10_87002_rec_membranes.mrc
> models #6

> show #!1.2.1 models

> show #!1.2.2 models

> show #!1.2.4 models

> show #!1.2.5 models

> show #!1.2.3 models

> save
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/segmentaion.cxs

> view orient

> open
> /Users/zhenhou/Desktop/HIV_Nuc_segmentation_new/WT/87002/imported_tube.em
> format motl

> artiax clip off

Opened Particle list imported_tube.em with 181 particles.  

> artiax particles #1.2.6 originScaleFactor 7.0

> artiax view xy

> artiax hide markers

[Repeated 1 time(s)]

> artiax hide axes

> artiax particles #1.2.6 axesSize 1.62015209

> open /Users/zhenhou/Desktop/CA_imported_extra_density.mrc

Opened CA_imported_extra_density.mrc as #4, grid size 96,96,96, pixel 3.8,
shown at level 0.219, step 1, values float32  

> artiax attach #4 toParticleList #1.2.6

Opened CA_imported_extra_density.mrc as #1.2.6.1.1, grid size 96,96,96, pixel
3.8, shown at level 0.219, step 1, values float32  

> volume #1.2.6.1.1 capFaces false

> artiax show #1.2.6 surfaces

> artiax particles #1.2.6 surfaceLevel -1.9362592

> artiax particles #1.2.6 surfaceLevel -7.61955007

> artiax particles #1.2.6 surfaceLevel -7.20166104

> artiax particles #1.2.6 surfaceLevel 1.23969747

> artiax particles #1.2.6 surfaceLevel 1.90831992

> artiax particles #1.2.6 surfaceLevel 1.74116431

> ui mousemode right "mark surface"

> marker #1.2.6.3 position 5564,4792,1918 color #f0a3ff radius 4

> ui mousemode right "translate selected particles"

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  

Window position QRect(2090,376 600x300) outside any known screen, using
primary screen  

IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 651, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mouse_modes/mousemodes.py", line 550, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 45, in mouse_drag  
self._translate(shift)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/mouse.py", line 94, in _translate  
translate_instances(step, self._collections, self._masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 640, in
translate_instances  
move_instances(t, drawings, masks)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 645, in
move_instances  
d.move_children(tf, m)  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
IndexError: arrays used as indices must be of integer (or boolean) type  
  
File "/Users/zhenhou/Library/Application Support/ChimeraX/1.7/lib/python/site-
packages/chimerax/artiax/particle/SurfaceCollectionModel.py", line 342, in
move_children  
ids = self.child_ids[pm]  
~~~~~~~~~~~~~~^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M2
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac
      Model Identifier: Mac14,7
      Model Number: Z16S000PAB/A
      Chip: Unknown
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 24 GB
      System Firmware Version: 10151.140.19
      OS Loader Version: 10151.140.19

Software:

    System Software Overview:

      System Version: macOS 14.6 (23G80)
      Kernel Version: Darwin 23.6.0
      Time since boot: 54 days, 7 hours, 15 minutes

Graphics/Displays:

    Apple M2:

      Chipset Model: Apple M2
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    annotated-types: 0.7.0
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.4.5
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.22.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.7.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    geomdl: 5.3.1
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    pandas: 2.2.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pyarrow: 15.0.0
    pycollada: 0.7.2
    pydantic: 2.8.2
    pydantic-core: 2.20.1
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    starfile: 0.5.6
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

[Eric Pettersen]

Old version of ArtiaX